Wall clock time and date at job start Wed Apr 1 2020 02:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47294 * 2 1 4 4 C 1.53008 * 109.46798 * 120.00116 * 2 1 3 5 5 N 1.46904 * 109.46804 * 175.16152 * 4 2 1 6 6 C 1.46898 * 110.99877 * 198.92474 * 5 4 2 7 7 C 1.46903 * 110.99763 * 74.97485 * 5 4 2 8 8 C 1.50695 * 109.46863 * 189.99953 * 7 5 4 9 9 O 1.21295 * 120.00451 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00179 * 180.02562 * 8 7 5 11 11 C 1.37096 * 119.99945 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00391 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99716 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00028 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00123 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46869 * 89.99253 * 15 13 11 17 17 H 1.48494 * 109.47473 * 209.99567 * 15 13 11 18 18 H 1.48498 * 109.47014 * 329.99855 * 15 13 11 19 19 N 1.46496 * 109.47017 * 239.99781 * 2 1 3 20 20 C 1.34777 * 119.99863 * 82.99580 * 19 2 1 21 21 O 1.21276 * 119.99957 * 359.97438 * 20 19 2 22 22 C 1.50703 * 120.00113 * 179.72733 * 20 19 2 23 23 C 1.52992 * 109.47266 * 180.27273 * 22 20 19 24 24 O 1.42968 * 109.47280 * 294.99542 * 23 22 20 25 25 C 1.43088 * 113.77112 * 181.20440 * 24 23 22 26 26 C 1.53258 * 108.94098 * 57.97317 * 25 24 23 27 27 C 1.53264 * 108.84447 * 305.47166 * 26 25 24 28 28 O 1.42969 * 109.47324 * 174.99361 * 23 22 20 29 29 H 1.08997 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47084 * 300.00169 * 1 2 3 31 31 H 1.08998 * 109.47247 * 59.99743 * 1 2 3 32 32 H 1.09001 * 109.46846 * 295.16202 * 4 2 1 33 33 H 1.08996 * 109.47093 * 55.16410 * 4 2 1 34 34 H 1.09000 * 109.46747 * 54.12187 * 6 5 4 35 35 H 1.08997 * 109.47170 * 174.11958 * 6 5 4 36 36 H 1.08997 * 109.47253 * 294.12221 * 6 5 4 37 37 H 1.09004 * 109.47190 * 309.99438 * 7 5 4 38 38 H 1.09000 * 109.47308 * 70.00029 * 7 5 4 39 39 H 0.97000 * 119.99538 * 359.97438 * 10 8 7 40 40 H 0.96998 * 120.00273 * 180.02562 * 14 13 11 41 41 H 0.96997 * 120.00176 * 262.99566 * 19 2 1 42 42 H 1.09010 * 109.46841 * 300.27225 * 22 20 19 43 43 H 1.09000 * 109.47204 * 60.26606 * 22 20 19 44 44 H 1.09006 * 109.46966 * 54.99890 * 23 22 20 45 45 H 1.09000 * 109.56192 * 298.13087 * 25 24 23 46 46 H 1.09004 * 109.55883 * 177.81076 * 25 24 23 47 47 H 1.09011 * 109.57401 * 185.66990 * 26 25 24 48 48 H 1.08994 * 109.68360 * 65.34772 * 26 25 24 49 49 H 1.08996 * 109.55986 * 294.68789 * 27 26 25 50 50 H 1.09001 * 109.64670 * 174.41780 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5043 -0.8233 1.1923 6 6 3.9951 -1.8668 2.1024 7 6 4.1340 0.4708 1.4868 8 6 5.6077 0.3933 1.1818 9 8 6.0866 -0.6386 0.7609 10 7 6.3940 1.4703 1.3776 11 6 7.7348 1.3996 1.1005 12 1 8.1610 0.4811 0.7250 13 6 8.5453 2.5102 1.3019 14 7 9.8304 2.4426 1.0359 15 14 7.8081 4.0992 1.9507 16 1 7.8622 4.1002 3.4348 17 1 8.5810 5.2538 1.4265 18 1 6.3952 4.2068 1.5068 19 7 2.0183 -0.6906 -1.1961 20 6 2.1087 -0.0288 -2.3667 21 8 1.7854 1.1384 -2.4299 22 6 2.6168 -0.7375 -3.5958 23 6 2.6261 0.2341 -4.7775 24 8 1.2847 0.6178 -5.0897 25 6 1.1843 1.5090 -6.2046 26 6 1.8157 0.8432 -7.4322 27 6 3.2469 0.4194 -7.0842 28 8 3.2163 -0.4026 -5.9134 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7490 -0.1599 2.1372 33 1 1.6076 -1.7209 1.2936 34 1 3.4877 -2.8066 1.8848 35 1 5.0690 -1.9933 1.9647 36 1 3.7929 -1.5747 3.1328 37 1 3.6761 1.2459 0.8723 38 1 3.9932 0.7120 2.5405 39 1 6.0111 2.2955 1.7145 40 1 10.3963 3.2177 1.1768 41 1 2.2765 -1.6242 -1.1457 42 1 3.6292 -1.0988 -3.4144 43 1 1.9655 -1.5812 -3.8241 44 1 3.2056 1.1194 -4.5155 45 1 1.7126 2.4356 -5.9799 46 1 0.1350 1.7250 -6.4058 47 1 1.8357 1.5504 -8.2615 48 1 1.2334 -0.0340 -7.7142 49 1 3.8533 1.3046 -6.8928 50 1 3.6745 -0.1433 -7.9141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275543916.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:37 Heat of formation + Delta-G solvation = -154.147594 kcal Electronic energy + Delta-G solvation = -31346.151242 eV Core-core repulsion = 26987.934159 eV Total energy + Delta-G solvation = -4358.217084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.32204 -39.49907 -38.67953 -36.99589 -35.76078 -34.73335 -33.80576 -33.35721 -31.66188 -31.46857 -29.68202 -28.24926 -26.98915 -26.14818 -24.62815 -24.12292 -22.41887 -21.38463 -20.85648 -20.25496 -19.31487 -18.25919 -17.81392 -16.89477 -16.72891 -16.28824 -16.10728 -15.81011 -15.35381 -15.12922 -14.93380 -14.90865 -14.69223 -14.32670 -14.13585 -13.63444 -13.49277 -13.45084 -13.18158 -13.06400 -12.87713 -12.66969 -12.43312 -12.16192 -12.00542 -11.92557 -11.79286 -11.73378 -11.52756 -11.29628 -11.27593 -11.23636 -11.12560 -10.68400 -10.57940 -10.17505 -9.96577 -9.80393 -9.68634 -9.52410 -8.90841 -8.57477 -8.17285 -7.98506 -6.30082 -3.81155 2.80825 2.98358 3.04881 3.07981 3.16297 3.52181 3.70277 3.75414 3.94181 4.11725 4.48771 4.50095 4.61210 4.69680 4.85501 4.88058 4.88689 5.01572 5.11160 5.17158 5.19425 5.21628 5.26728 5.36407 5.41289 5.49215 5.51548 5.54959 5.56076 5.61378 5.66444 5.67020 5.79294 5.81024 5.86982 5.94798 5.99968 6.12187 6.46065 6.62250 6.68836 7.04500 7.12078 7.25656 7.59597 7.66744 8.15757 8.39425 8.61480 8.96476 9.43975 9.84931 10.83038 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008732 B = 0.003173 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3205.911547 B = 8823.638569 C =10741.463738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.085 0.915 4 C 0.043 3.957 5 N -0.515 5.515 6 C 0.022 3.978 7 C 0.041 3.959 8 C 0.455 3.545 9 O -0.560 6.560 10 N -0.592 5.592 11 C -0.303 4.303 12 H 0.120 0.880 13 C 0.042 3.958 14 N -0.882 5.882 15 Si 0.877 3.123 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 N -0.705 5.705 20 C 0.525 3.475 21 O -0.538 6.538 22 C -0.128 4.128 23 C 0.265 3.735 24 O -0.379 6.379 25 C 0.058 3.942 26 C -0.193 4.193 27 C 0.058 3.942 28 O -0.394 6.394 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.015 0.985 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.404 0.596 42 H 0.120 0.880 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.055 0.945 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.652 -4.218 -8.534 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.103 0.897 4 C -0.086 4.086 5 N -0.239 5.239 6 C -0.126 4.126 7 C -0.091 4.091 8 C 0.240 3.760 9 O -0.441 6.441 10 N -0.231 5.231 11 C -0.432 4.432 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.522 5.522 15 Si 0.704 3.296 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.194 1.194 19 N -0.357 5.357 20 C 0.311 3.689 21 O -0.415 6.415 22 C -0.168 4.168 23 C 0.169 3.831 24 O -0.299 6.299 25 C -0.018 4.018 26 C -0.231 4.231 27 C -0.018 4.018 28 O -0.315 6.315 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.034 0.966 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.239 0.761 42 H 0.138 0.862 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.102 0.898 48 H 0.099 0.901 49 H 0.074 0.926 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.284 -4.362 -9.214 22.702 hybrid contribution -0.368 1.592 1.137 1.990 sum -20.652 -2.770 -8.078 22.348 Atomic orbital electron populations 1.22145 0.95187 1.02047 1.02622 1.20910 0.93180 0.97590 0.84047 0.89731 1.22506 0.88966 1.00993 0.96153 1.61550 1.03409 1.05589 1.53355 1.22572 1.04262 0.93517 0.92248 1.21967 0.95296 0.92235 0.99577 1.19600 0.87003 0.84910 0.84439 1.90510 1.75023 1.29889 1.48724 1.42222 1.09121 1.11787 1.59970 1.19415 0.80833 1.01483 1.41464 0.86267 1.25025 0.95323 0.97995 0.97765 1.69616 1.03896 1.30993 1.47686 0.86699 0.79264 0.83883 0.79757 1.19666 1.20152 1.19446 1.45676 1.66624 1.15281 1.08078 1.20056 0.77595 0.87021 0.84252 1.90702 1.49200 1.16375 1.85243 1.21448 1.05310 0.99178 0.90884 1.22885 0.81277 0.93674 0.85227 1.88147 1.27703 1.64950 1.49128 1.22591 1.02036 0.92023 0.85182 1.22809 0.98155 1.02622 0.99496 1.22636 0.95590 0.95491 0.88112 1.88064 1.80195 1.42766 1.20476 0.92484 0.91853 0.91689 0.93342 0.90161 0.92137 0.88373 0.96633 0.89399 0.93344 0.79775 0.91643 0.76132 0.86171 0.87525 0.91580 0.92741 0.88548 0.89832 0.90121 0.92628 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.46 37.16 0.35 -1.21 16 2 C 0.15 1.72 2.55 -67.93 -0.17 1.55 16 3 H 0.08 1.19 6.41 -51.93 -0.33 0.85 16 4 C 0.04 0.46 4.54 -3.82 -0.02 0.44 16 5 N -0.52 -7.54 4.16 -244.37 -1.02 -8.56 16 6 C 0.02 0.31 9.17 60.06 0.55 0.86 16 7 C 0.04 0.68 5.28 -4.98 -0.03 0.65 16 8 C 0.45 10.24 7.52 -10.99 -0.08 10.16 16 9 O -0.56 -14.50 13.88 5.54 0.08 -14.42 16 10 N -0.59 -14.21 5.09 -10.96 -0.06 -14.26 16 11 C -0.30 -8.59 10.16 -14.93 -0.15 -8.75 16 12 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 13 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 14 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 15 Si 0.88 19.66 27.74 -169.99 -4.71 14.95 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 19 N -0.71 -8.51 4.82 -53.81 -0.26 -8.77 16 20 C 0.53 7.43 7.65 -10.98 -0.08 7.35 16 21 O -0.54 -9.41 15.10 -8.85 -0.13 -9.55 16 22 C -0.13 -1.56 5.78 -27.89 -0.16 -1.72 16 23 C 0.26 3.55 2.80 37.15 0.10 3.66 16 24 O -0.38 -5.17 9.77 -64.75 -0.63 -5.81 16 25 C 0.06 0.60 6.96 37.29 0.26 0.86 16 26 C -0.19 -1.60 6.35 -26.46 -0.17 -1.77 16 27 C 0.06 0.56 6.96 37.29 0.26 0.82 16 28 O -0.39 -5.03 10.54 -59.03 -0.62 -5.65 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.05 0.48 8.01 -51.93 -0.42 0.07 16 33 H 0.08 0.73 7.81 -51.93 -0.41 0.32 16 34 H 0.06 0.71 7.94 -51.93 -0.41 0.30 16 35 H 0.10 1.79 5.92 -51.93 -0.31 1.48 16 36 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 37 H 0.09 1.41 6.66 -51.93 -0.35 1.06 16 38 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 39 H 0.37 7.92 5.76 -40.82 -0.24 7.69 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.40 4.23 8.58 -40.82 -0.35 3.88 16 42 H 0.12 1.40 8.14 -51.92 -0.42 0.97 16 43 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 403.01 15.07 6.07 6.07 Total: -1.00 -35.24 403.01 -8.21 -43.45 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -8.27 Total: 13.69 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 0.56 Total: 13.95 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.56 Total: -56.70 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -1.31 Total: -35.43 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.95 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.24 -8.21 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275543916.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.693 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds