Wall clock time and date at job start Wed Apr 1 2020 02:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47294 * 2 1 4 4 C 1.53008 * 109.46798 * 120.00116 * 2 1 3 5 5 N 1.46904 * 109.46804 * 175.16152 * 4 2 1 6 6 C 1.46898 * 110.99877 * 198.92474 * 5 4 2 7 7 C 1.46903 * 110.99763 * 74.97485 * 5 4 2 8 8 C 1.50695 * 109.46863 * 189.99953 * 7 5 4 9 9 O 1.21295 * 120.00451 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00179 * 180.02562 * 8 7 5 11 11 C 1.37096 * 119.99945 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00391 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99716 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00028 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00123 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46869 * 89.99253 * 15 13 11 17 17 H 1.48494 * 109.47473 * 209.99567 * 15 13 11 18 18 H 1.48498 * 109.47014 * 329.99855 * 15 13 11 19 19 N 1.46496 * 109.47017 * 239.99781 * 2 1 3 20 20 C 1.34777 * 119.99863 * 82.99580 * 19 2 1 21 21 O 1.21276 * 119.99957 * 359.97438 * 20 19 2 22 22 C 1.50703 * 120.00113 * 179.72733 * 20 19 2 23 23 C 1.52992 * 109.47266 * 180.27273 * 22 20 19 24 24 O 1.42968 * 109.47280 * 294.99542 * 23 22 20 25 25 C 1.43088 * 113.77112 * 181.20440 * 24 23 22 26 26 C 1.53258 * 108.94098 * 57.97317 * 25 24 23 27 27 C 1.53264 * 108.84447 * 305.47166 * 26 25 24 28 28 O 1.42969 * 109.47324 * 174.99361 * 23 22 20 29 29 H 1.08997 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47084 * 300.00169 * 1 2 3 31 31 H 1.08998 * 109.47247 * 59.99743 * 1 2 3 32 32 H 1.09001 * 109.46846 * 295.16202 * 4 2 1 33 33 H 1.08996 * 109.47093 * 55.16410 * 4 2 1 34 34 H 1.09000 * 109.46747 * 54.12187 * 6 5 4 35 35 H 1.08997 * 109.47170 * 174.11958 * 6 5 4 36 36 H 1.08997 * 109.47253 * 294.12221 * 6 5 4 37 37 H 1.09004 * 109.47190 * 309.99438 * 7 5 4 38 38 H 1.09000 * 109.47308 * 70.00029 * 7 5 4 39 39 H 0.97000 * 119.99538 * 359.97438 * 10 8 7 40 40 H 0.96998 * 120.00273 * 180.02562 * 14 13 11 41 41 H 0.96997 * 120.00176 * 262.99566 * 19 2 1 42 42 H 1.09010 * 109.46841 * 300.27225 * 22 20 19 43 43 H 1.09000 * 109.47204 * 60.26606 * 22 20 19 44 44 H 1.09006 * 109.46966 * 54.99890 * 23 22 20 45 45 H 1.09000 * 109.56192 * 298.13087 * 25 24 23 46 46 H 1.09004 * 109.55883 * 177.81076 * 25 24 23 47 47 H 1.09011 * 109.57401 * 185.66990 * 26 25 24 48 48 H 1.08994 * 109.68360 * 65.34772 * 26 25 24 49 49 H 1.08996 * 109.55986 * 294.68789 * 27 26 25 50 50 H 1.09001 * 109.64670 * 174.41780 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5043 -0.8233 1.1923 6 6 3.9951 -1.8668 2.1024 7 6 4.1340 0.4708 1.4868 8 6 5.6077 0.3933 1.1818 9 8 6.0866 -0.6386 0.7609 10 7 6.3940 1.4703 1.3776 11 6 7.7348 1.3996 1.1005 12 1 8.1610 0.4811 0.7250 13 6 8.5453 2.5102 1.3019 14 7 9.8304 2.4426 1.0359 15 14 7.8081 4.0992 1.9507 16 1 7.8622 4.1002 3.4348 17 1 8.5810 5.2538 1.4265 18 1 6.3952 4.2068 1.5068 19 7 2.0183 -0.6906 -1.1961 20 6 2.1087 -0.0288 -2.3667 21 8 1.7854 1.1384 -2.4299 22 6 2.6168 -0.7375 -3.5958 23 6 2.6261 0.2341 -4.7775 24 8 1.2847 0.6178 -5.0897 25 6 1.1843 1.5090 -6.2046 26 6 1.8157 0.8432 -7.4322 27 6 3.2469 0.4194 -7.0842 28 8 3.2163 -0.4026 -5.9134 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7490 -0.1599 2.1372 33 1 1.6076 -1.7209 1.2936 34 1 3.4877 -2.8066 1.8848 35 1 5.0690 -1.9933 1.9647 36 1 3.7929 -1.5747 3.1328 37 1 3.6761 1.2459 0.8723 38 1 3.9932 0.7120 2.5405 39 1 6.0111 2.2955 1.7145 40 1 10.3963 3.2177 1.1768 41 1 2.2765 -1.6242 -1.1457 42 1 3.6292 -1.0988 -3.4144 43 1 1.9655 -1.5812 -3.8241 44 1 3.2056 1.1194 -4.5155 45 1 1.7126 2.4356 -5.9799 46 1 0.1350 1.7250 -6.4058 47 1 1.8357 1.5504 -8.2615 48 1 1.2334 -0.0340 -7.7142 49 1 3.8533 1.3046 -6.8928 50 1 3.6745 -0.1433 -7.9141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275543916.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:36 Heat of formation + Delta-G solvation = -182.715618 kcal Electronic energy + Delta-G solvation = -31347.390045 eV Core-core repulsion = 26987.934159 eV Total energy + Delta-G solvation = -4359.455886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30874 -40.65486 -40.19547 -38.28305 -36.70139 -36.13676 -35.52497 -34.23115 -33.74886 -32.41993 -30.60999 -29.71981 -27.93856 -26.95255 -26.48088 -25.11834 -23.58346 -22.22080 -21.88894 -21.38205 -21.12099 -20.14472 -18.79532 -17.97776 -17.77216 -17.62540 -17.16822 -16.84238 -16.77245 -16.63586 -15.96270 -15.83183 -15.73829 -15.64412 -15.42515 -15.09291 -14.95973 -14.51523 -14.32946 -14.31635 -14.14977 -13.88746 -13.58925 -13.50413 -13.16528 -12.93813 -12.87832 -12.82280 -12.61650 -12.46627 -12.43659 -12.36539 -12.13142 -12.10911 -12.00736 -11.68611 -11.45275 -11.02834 -10.84402 -10.70382 -10.34800 -10.22931 -9.92222 -9.18657 -8.41979 -6.01645 1.28296 1.32139 1.41004 1.72708 1.96259 2.03873 2.20814 2.61642 2.62826 2.85114 3.14451 3.22898 3.71006 3.76606 3.76719 3.83439 3.86528 4.05214 4.12848 4.19811 4.24683 4.34100 4.36847 4.39279 4.42446 4.49356 4.53584 4.60220 4.67699 4.70291 4.73896 4.79284 4.81940 4.83599 4.86963 5.08629 5.11200 5.26602 5.34374 5.52394 5.64804 5.80649 5.90513 6.02279 6.12568 6.22204 6.59569 6.67448 6.88770 7.36542 7.40183 7.97235 8.75646 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008732 B = 0.003173 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3205.911547 B = 8823.638569 C =10741.463738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.059 0.941 4 C 0.051 3.949 5 N -0.533 5.533 6 C 0.027 3.973 7 C 0.053 3.947 8 C 0.454 3.546 9 O -0.599 6.599 10 N -0.597 5.597 11 C -0.324 4.324 12 H 0.058 0.942 13 C -0.014 4.014 14 N -0.934 5.934 15 Si 0.959 3.041 16 H -0.254 1.254 17 H -0.275 1.275 18 H -0.238 1.238 19 N -0.697 5.697 20 C 0.519 3.481 21 O -0.577 6.577 22 C -0.125 4.125 23 C 0.266 3.734 24 O -0.398 6.398 25 C 0.046 3.954 26 C -0.182 4.182 27 C 0.045 3.955 28 O -0.408 6.408 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.031 0.969 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.386 0.614 40 H 0.278 0.722 41 H 0.413 0.587 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.043 0.957 45 H 0.049 0.951 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.082 0.918 49 H 0.055 0.945 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.003 -3.608 -7.627 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.077 0.923 4 C -0.077 4.077 5 N -0.257 5.257 6 C -0.121 4.121 7 C -0.078 4.078 8 C 0.241 3.759 9 O -0.482 6.482 10 N -0.239 5.239 11 C -0.453 4.453 12 H 0.076 0.924 13 C -0.212 4.212 14 N -0.575 5.575 15 Si 0.780 3.220 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.162 1.162 19 N -0.348 5.348 20 C 0.306 3.694 21 O -0.457 6.457 22 C -0.164 4.164 23 C 0.170 3.830 24 O -0.319 6.319 25 C -0.030 4.030 26 C -0.220 4.220 27 C -0.031 4.031 28 O -0.329 6.329 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.221 0.779 40 H 0.088 0.912 41 H 0.249 0.751 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.100 0.900 49 H 0.073 0.927 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.666 -3.792 -8.296 25.363 hybrid contribution 0.689 1.262 0.775 1.634 sum -22.977 -2.530 -7.521 24.309 Atomic orbital electron populations 1.22042 0.93363 1.03164 1.02386 1.21009 0.94535 0.96337 0.84146 0.92285 1.22560 0.86036 1.02881 0.96226 1.61451 1.05789 1.04497 1.54009 1.22443 1.01638 0.94843 0.93131 1.21835 0.90461 0.93998 1.01491 1.20835 0.89434 0.83584 0.82010 1.90503 1.76594 1.31399 1.49718 1.42094 1.07625 1.13166 1.60970 1.18995 0.83310 1.00017 1.42972 0.92358 1.26034 0.95474 1.02324 0.97389 1.69792 1.05914 1.32715 1.49062 0.85439 0.79737 0.77187 0.79659 1.17860 1.19995 1.16210 1.45697 1.65726 1.15621 1.07784 1.20373 0.77163 0.86660 0.85204 1.90676 1.51119 1.18022 1.85908 1.21446 1.05737 0.99364 0.89892 1.22734 0.81170 0.93132 0.85929 1.88112 1.27571 1.65644 1.50568 1.22869 1.03335 0.91605 0.85196 1.22747 0.96821 1.03132 0.99294 1.22953 0.96837 0.95678 0.87635 1.88037 1.80264 1.43491 1.21153 0.90640 0.89986 0.94028 0.91135 0.87396 0.89350 0.93058 0.95019 0.88264 0.90322 0.77879 0.91202 0.75091 0.86011 0.85444 0.93991 0.93217 0.86868 0.87062 0.89952 0.92689 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.46 71.98 0.68 -1.82 16 2 C 0.14 3.02 2.55 44.99 0.11 3.14 16 3 H 0.06 1.57 6.41 -2.39 -0.02 1.55 16 4 C 0.05 0.89 4.54 86.30 0.39 1.28 16 5 N -0.53 -14.31 4.16 -927.03 -3.86 -18.17 16 6 C 0.03 0.72 9.17 127.69 1.17 1.89 16 7 C 0.05 1.67 5.28 85.56 0.45 2.12 16 8 C 0.45 20.59 7.52 87.66 0.66 21.25 16 9 O -0.60 -32.31 13.88 -3.08 -0.04 -32.35 16 10 N -0.60 -28.84 5.09 -306.98 -1.56 -30.40 16 11 C -0.32 -19.19 10.16 84.04 0.85 -18.34 16 12 H 0.06 4.08 7.39 -2.91 -0.02 4.06 16 13 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 14 N -0.93 -56.94 13.96 21.66 0.30 -56.64 16 15 Si 0.96 40.03 27.74 68.60 1.90 41.93 16 16 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 18 H -0.24 -8.69 6.52 99.48 0.65 -8.04 16 19 N -0.70 -15.91 4.82 -442.53 -2.14 -18.04 16 20 C 0.52 14.71 7.65 87.66 0.67 15.38 16 21 O -0.58 -20.60 15.10 10.76 0.16 -20.44 16 22 C -0.12 -3.06 5.78 29.85 0.17 -2.89 16 23 C 0.27 7.34 2.80 71.98 0.20 7.54 16 24 O -0.40 -10.96 9.77 -120.75 -1.18 -12.14 16 25 C 0.05 0.92 6.96 72.07 0.50 1.42 16 26 C -0.18 -2.77 6.35 30.77 0.20 -2.58 16 27 C 0.04 0.83 6.96 72.07 0.50 1.33 16 28 O -0.41 -10.46 10.54 -126.22 -1.33 -11.79 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 0.90 8.13 -2.39 -0.02 0.88 16 32 H 0.07 1.02 8.01 -2.39 -0.02 1.00 16 33 H 0.11 1.39 7.81 -2.39 -0.02 1.37 16 34 H 0.09 1.82 7.94 -2.39 -0.02 1.80 16 35 H 0.05 1.87 5.92 -2.39 -0.01 1.86 16 36 H 0.03 0.73 8.13 -2.39 -0.02 0.71 16 37 H 0.10 2.95 6.66 -2.38 -0.02 2.93 16 38 H 0.08 2.03 8.11 -2.39 -0.02 2.01 16 39 H 0.39 15.87 5.76 -92.71 -0.53 15.33 16 40 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.41 7.88 8.58 -92.71 -0.80 7.09 16 42 H 0.12 2.89 8.14 -2.38 -0.02 2.88 16 43 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.04 1.33 7.96 -2.38 -0.02 1.31 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 48 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -83.62 403.01 -1.14 -84.77 By element: Atomic # 1 Polarization: 44.27 SS G_CDS: -0.43 Total: 43.84 kcal Atomic # 6 Polarization: 22.40 SS G_CDS: 7.03 Total: 29.43 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -7.25 Total: -123.25 kcal Atomic # 8 Polarization: -74.33 SS G_CDS: -2.39 Total: -76.72 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.90 Total: 41.93 kcal Total: -83.62 -1.14 -84.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275543916.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.950 kcal (2) G-P(sol) polarization free energy of solvation -83.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds