Wall clock time and date at job start Wed Apr 1 2020 01:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47191 * 2 1 4 4 C 1.42901 * 113.99829 * 181.56518 * 3 2 1 5 5 H 1.09002 * 109.47355 * 329.42735 * 4 3 2 6 6 C 1.53004 * 109.46994 * 209.43042 * 4 3 2 7 7 C 1.52996 * 109.47233 * 65.28273 * 6 4 3 8 8 C 1.50699 * 109.47346 * 89.42843 * 4 3 2 9 9 O 1.21276 * 119.99988 * 5.00096 * 8 4 3 10 10 N 1.34781 * 119.99959 * 184.99779 * 8 4 3 11 11 C 1.46501 * 119.99828 * 180.02562 * 10 8 4 12 12 C 1.53000 * 109.47092 * 180.02562 * 11 10 8 13 13 O 1.42904 * 112.93774 * 53.42969 * 12 11 10 14 14 C 1.53939 * 113.73042 * 281.72946 * 12 11 10 15 15 N 1.47965 * 86.17628 * 221.91827 * 14 12 11 16 16 C 1.46903 * 110.99743 * 137.58274 * 15 14 12 17 17 C 1.50696 * 109.47358 * 70.63977 * 16 15 14 18 18 O 1.21294 * 120.00022 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00202 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99802 * 179.97438 * 19 17 16 21 21 H 1.07990 * 119.99894 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99661 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00129 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46985 * 59.99997 * 24 22 20 26 26 H 1.48498 * 109.47144 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47207 * 299.99992 * 24 22 20 28 28 C 1.47962 * 90.76179 * 24.69289 * 15 14 12 29 29 H 1.08999 * 109.46716 * 60.00336 * 1 2 3 30 30 H 1.08994 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47183 * 300.00973 * 1 2 3 32 32 H 1.08999 * 109.47183 * 239.99027 * 2 1 3 33 33 H 1.09006 * 109.47046 * 119.99566 * 2 1 3 34 34 H 1.09001 * 109.46928 * 185.28154 * 6 4 3 35 35 H 1.08997 * 109.47069 * 305.27963 * 6 4 3 36 36 H 1.09003 * 109.47273 * 54.70783 * 7 6 4 37 37 H 1.08995 * 109.47338 * 174.71326 * 7 6 4 38 38 H 1.09004 * 109.47016 * 294.71481 * 7 6 4 39 39 H 0.96998 * 120.00052 * 0.02562 * 10 8 4 40 40 H 1.09003 * 109.47271 * 300.00339 * 11 10 8 41 41 H 1.08998 * 109.47284 * 60.00145 * 11 10 8 42 42 H 0.96699 * 113.99890 * 309.67194 * 13 12 11 43 43 H 1.08998 * 113.75867 * 336.23348 * 14 12 11 44 44 H 1.09001 * 113.75868 * 107.60648 * 14 12 11 45 45 H 1.09000 * 109.47342 * 190.64267 * 16 15 14 46 46 H 1.09001 * 109.47041 * 310.64100 * 16 15 14 47 47 H 0.96994 * 119.99866 * 0.02562 * 19 17 16 48 48 H 0.96995 * 120.00191 * 179.97438 * 23 22 20 49 49 H 1.09003 * 113.75551 * 220.99047 * 28 15 14 50 50 H 1.09001 * 113.86278 * 89.64208 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4305 1.4602 -0.0357 5 1 3.8758 0.6022 0.4680 6 6 3.8580 2.7465 0.6741 7 6 3.5026 2.6517 2.1592 8 6 3.8957 1.4987 -1.4685 9 8 3.0839 1.5272 -2.3691 10 7 5.2139 1.5015 -1.7492 11 6 5.6661 1.5396 -3.1422 12 6 7.1956 1.5340 -3.1822 13 8 7.7681 0.4529 -2.4436 14 6 7.8284 2.9027 -2.8725 15 7 8.7646 2.6095 -3.9801 16 6 8.9775 3.7973 -4.8179 17 6 9.7886 4.8120 -4.0540 18 8 10.1530 4.5698 -2.9227 19 7 10.1090 5.9887 -4.6277 20 6 10.8464 6.9120 -3.9325 21 1 11.1709 6.6963 -2.9253 22 6 11.1763 8.1254 -4.5238 23 7 10.7811 8.3881 -5.7493 24 14 12.1817 9.3831 -3.5769 25 1 13.4946 8.7934 -3.2113 26 1 12.3974 10.5836 -4.4240 27 1 11.4528 9.7718 -2.3429 28 6 7.7789 1.6950 -4.5976 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.8934 -0.5140 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 4.9343 2.8806 0.5659 35 1 3.3395 3.5961 0.2299 36 1 3.9451 1.7497 2.5819 37 1 3.8904 3.5260 2.6821 38 1 2.4192 2.6119 2.2717 39 1 5.8632 1.4784 -1.0290 40 1 5.2860 0.6658 -3.6716 41 1 5.2931 2.4450 -3.6207 42 1 7.4251 0.3663 -1.5436 43 1 7.1670 3.7467 -3.0684 44 1 8.3072 2.9540 -1.8947 45 1 9.5125 3.5120 -5.7237 46 1 8.0138 4.2301 -5.0862 47 1 9.8172 6.1826 -5.5322 48 1 11.0110 9.2352 -6.1619 49 1 8.2182 0.7814 -4.9980 50 1 7.1023 2.1840 -5.2985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278844029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:37 Heat of formation + Delta-G solvation = -131.561512 kcal Electronic energy + Delta-G solvation = -30489.078151 eV Core-core repulsion = 26131.840473 eV Total energy + Delta-G solvation = -4357.237678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87460 -40.08273 -38.13827 -37.76449 -35.86359 -34.75725 -34.05206 -33.89736 -31.31424 -31.20276 -30.41411 -28.41398 -26.57714 -26.17917 -24.83325 -23.28417 -22.68530 -22.25284 -20.85221 -20.02876 -19.25545 -18.40392 -17.85438 -17.56805 -16.70976 -16.30550 -15.91092 -15.75631 -15.62624 -15.34216 -15.04813 -14.84747 -14.58233 -14.43960 -14.17447 -14.02460 -13.69370 -13.50170 -13.14064 -13.06749 -12.86862 -12.78775 -12.44831 -12.30021 -12.19745 -12.07665 -11.90326 -11.73396 -11.51531 -11.49876 -11.31545 -11.17294 -11.02875 -10.82441 -10.68404 -10.45788 -10.23583 -9.99363 -9.58015 -9.51481 -9.45566 -8.69015 -8.25965 -7.98502 -6.43427 -3.84472 2.25478 2.62048 3.18472 3.24479 3.27112 3.28605 3.64017 3.86818 3.96099 4.14275 4.19889 4.31376 4.43360 4.43693 4.51088 4.70486 4.82971 4.83914 4.87013 5.01214 5.06295 5.08015 5.21880 5.25037 5.28487 5.34462 5.41248 5.44636 5.57441 5.57896 5.61278 5.66619 5.68927 5.75608 5.79043 5.81217 5.88947 5.97331 6.10380 6.22410 6.55395 6.65484 7.05408 7.11808 7.38297 7.53054 7.86094 8.03247 8.59102 9.15704 9.51747 10.03316 10.74192 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.002104 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.610161 B =13301.640742 C =14340.638471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.353 6.353 4 C 0.077 3.923 5 H 0.087 0.913 6 C -0.118 4.118 7 C -0.149 4.149 8 C 0.490 3.510 9 O -0.521 6.521 10 N -0.728 5.728 11 C 0.101 3.899 12 C 0.087 3.913 13 O -0.521 6.521 14 C 0.000 4.000 15 N -0.440 5.440 16 C 0.007 3.993 17 C 0.443 3.557 18 O -0.580 6.580 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.018 3.982 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.398 0.602 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.370 0.630 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.100 0.900 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.263 -16.591 9.990 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.271 6.271 4 C 0.015 3.985 5 H 0.104 0.896 6 C -0.156 4.156 7 C -0.206 4.206 8 C 0.275 3.725 9 O -0.396 6.396 10 N -0.383 5.383 11 C -0.023 4.023 12 C 0.045 3.955 13 O -0.325 6.325 14 C -0.129 4.129 15 N -0.162 5.162 16 C -0.125 4.125 17 C 0.228 3.772 18 O -0.463 6.463 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.112 4.112 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.233 0.767 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.218 0.782 43 H 0.092 0.908 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.119 0.881 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.712 -16.692 9.538 25.473 hybrid contribution -0.178 1.109 0.201 1.142 sum -16.891 -15.582 9.739 24.959 Atomic orbital electron populations 1.21709 0.93374 1.02268 1.03296 1.22585 0.96098 0.83501 0.99979 1.88020 1.18129 1.26756 1.94149 1.22089 0.83910 1.00815 0.91646 0.89557 1.21618 1.01671 0.95856 0.96469 1.21717 1.02490 1.01973 0.94404 1.21488 0.82209 0.76282 0.92476 1.90728 1.53188 1.47716 1.47956 1.45968 1.07329 1.76249 1.08795 1.22042 0.93737 1.03560 0.83008 1.23062 0.89088 0.88317 0.95039 1.86643 1.67036 1.49928 1.28917 1.24522 0.93984 0.94902 0.99525 1.68479 1.31905 1.10411 1.05416 1.22514 0.99956 0.92318 0.97715 1.19642 0.85905 0.83460 0.88146 1.90518 1.58090 1.78457 1.19276 1.41863 1.47855 1.13889 1.16396 1.19641 1.28579 0.94842 0.99878 0.87992 1.25269 0.98236 0.98371 0.96068 1.69601 1.46316 1.25242 1.13101 0.85910 0.80013 0.79264 0.78990 1.19875 1.20958 1.19924 1.24121 0.94189 0.99449 0.93431 0.91558 0.91078 0.91859 0.93149 0.93307 0.89874 0.90151 0.92698 0.91962 0.91828 0.76695 0.90339 0.90050 0.78241 0.90799 0.88239 0.88906 0.92739 0.77483 0.91791 0.88138 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.43 6.44 37.16 0.24 0.67 16 3 O -0.35 -3.57 9.17 -55.09 -0.51 -4.07 16 4 C 0.08 0.63 2.51 -27.88 -0.07 0.56 16 5 H 0.09 0.48 7.81 -51.93 -0.41 0.07 16 6 C -0.12 -0.85 5.61 -26.73 -0.15 -1.00 16 7 C -0.15 -0.91 9.76 37.16 0.36 -0.55 16 8 C 0.49 5.19 7.12 -10.98 -0.08 5.11 16 9 O -0.52 -7.79 16.51 -14.30 -0.24 -8.03 16 10 N -0.73 -6.14 5.23 -60.29 -0.32 -6.45 16 11 C 0.10 1.00 5.28 -4.04 -0.02 0.98 16 12 C 0.09 0.98 1.52 -89.69 -0.14 0.84 16 13 O -0.52 -5.85 13.51 -35.23 -0.48 -6.33 16 14 C 0.00 0.00 6.16 -2.76 -0.02 -0.02 16 15 N -0.44 -7.27 5.95 -239.64 -1.43 -8.70 16 16 C 0.01 0.12 5.31 -4.98 -0.03 0.10 16 17 C 0.44 10.45 7.59 -10.99 -0.08 10.37 16 18 O -0.58 -15.61 15.12 5.54 0.08 -15.53 16 19 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.02 0.22 7.37 -2.77 -0.02 0.19 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.29 8.11 -51.93 -0.42 -0.13 16 34 H 0.08 0.48 7.76 -51.93 -0.40 0.08 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.44 7.97 -51.93 -0.41 0.02 16 39 H 0.40 2.31 7.01 -40.82 -0.29 2.02 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.88 8.05 -51.93 -0.42 0.47 16 42 H 0.37 2.60 7.61 45.56 0.35 2.95 16 43 H 0.07 1.07 7.67 -51.93 -0.40 0.67 16 44 H 0.10 1.60 8.09 -51.93 -0.42 1.18 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.05 0.85 7.69 -51.93 -0.40 0.45 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 LS Contribution 415.14 15.07 6.26 6.26 Total: -1.00 -36.10 415.14 -8.52 -44.62 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.68 Total: 11.70 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 0.14 Total: 8.63 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -1.07 Total: -53.25 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.13 Total: -33.95 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.10 -8.52 -44.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278844029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.942 kcal (2) G-P(sol) polarization free energy of solvation -36.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds