Wall clock time and date at job start Wed Apr 1 2020 01:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47191 * 2 1 4 4 C 1.42901 * 113.99829 * 181.56518 * 3 2 1 5 5 H 1.09002 * 109.47355 * 329.42735 * 4 3 2 6 6 C 1.53004 * 109.46994 * 209.43042 * 4 3 2 7 7 C 1.52996 * 109.47233 * 65.28273 * 6 4 3 8 8 C 1.50699 * 109.47346 * 89.42843 * 4 3 2 9 9 O 1.21276 * 119.99988 * 5.00096 * 8 4 3 10 10 N 1.34781 * 119.99959 * 184.99779 * 8 4 3 11 11 C 1.46501 * 119.99828 * 180.02562 * 10 8 4 12 12 C 1.53000 * 109.47092 * 180.02562 * 11 10 8 13 13 O 1.42904 * 112.93774 * 53.42969 * 12 11 10 14 14 C 1.53939 * 113.73042 * 281.72946 * 12 11 10 15 15 N 1.47965 * 86.17628 * 221.91827 * 14 12 11 16 16 C 1.46903 * 110.99743 * 137.58274 * 15 14 12 17 17 C 1.50696 * 109.47358 * 70.63977 * 16 15 14 18 18 O 1.21294 * 120.00022 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00202 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99802 * 179.97438 * 19 17 16 21 21 H 1.07990 * 119.99894 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99661 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00129 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46985 * 59.99997 * 24 22 20 26 26 H 1.48498 * 109.47144 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47207 * 299.99992 * 24 22 20 28 28 C 1.47962 * 90.76179 * 24.69289 * 15 14 12 29 29 H 1.08999 * 109.46716 * 60.00336 * 1 2 3 30 30 H 1.08994 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47183 * 300.00973 * 1 2 3 32 32 H 1.08999 * 109.47183 * 239.99027 * 2 1 3 33 33 H 1.09006 * 109.47046 * 119.99566 * 2 1 3 34 34 H 1.09001 * 109.46928 * 185.28154 * 6 4 3 35 35 H 1.08997 * 109.47069 * 305.27963 * 6 4 3 36 36 H 1.09003 * 109.47273 * 54.70783 * 7 6 4 37 37 H 1.08995 * 109.47338 * 174.71326 * 7 6 4 38 38 H 1.09004 * 109.47016 * 294.71481 * 7 6 4 39 39 H 0.96998 * 120.00052 * 0.02562 * 10 8 4 40 40 H 1.09003 * 109.47271 * 300.00339 * 11 10 8 41 41 H 1.08998 * 109.47284 * 60.00145 * 11 10 8 42 42 H 0.96699 * 113.99890 * 309.67194 * 13 12 11 43 43 H 1.08998 * 113.75867 * 336.23348 * 14 12 11 44 44 H 1.09001 * 113.75868 * 107.60648 * 14 12 11 45 45 H 1.09000 * 109.47342 * 190.64267 * 16 15 14 46 46 H 1.09001 * 109.47041 * 310.64100 * 16 15 14 47 47 H 0.96994 * 119.99866 * 0.02562 * 19 17 16 48 48 H 0.96995 * 120.00191 * 179.97438 * 23 22 20 49 49 H 1.09003 * 113.75551 * 220.99047 * 28 15 14 50 50 H 1.09001 * 113.86278 * 89.64208 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4305 1.4602 -0.0357 5 1 3.8758 0.6022 0.4680 6 6 3.8580 2.7465 0.6741 7 6 3.5026 2.6517 2.1592 8 6 3.8957 1.4987 -1.4685 9 8 3.0839 1.5272 -2.3691 10 7 5.2139 1.5015 -1.7492 11 6 5.6661 1.5396 -3.1422 12 6 7.1956 1.5340 -3.1822 13 8 7.7681 0.4529 -2.4436 14 6 7.8284 2.9027 -2.8725 15 7 8.7646 2.6095 -3.9801 16 6 8.9775 3.7973 -4.8179 17 6 9.7886 4.8120 -4.0540 18 8 10.1530 4.5698 -2.9227 19 7 10.1090 5.9887 -4.6277 20 6 10.8464 6.9120 -3.9325 21 1 11.1709 6.6963 -2.9253 22 6 11.1763 8.1254 -4.5238 23 7 10.7811 8.3881 -5.7493 24 14 12.1817 9.3831 -3.5769 25 1 13.4946 8.7934 -3.2113 26 1 12.3974 10.5836 -4.4240 27 1 11.4528 9.7718 -2.3429 28 6 7.7789 1.6950 -4.5976 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.8934 -0.5140 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 4.9343 2.8806 0.5659 35 1 3.3395 3.5961 0.2299 36 1 3.9451 1.7497 2.5819 37 1 3.8904 3.5260 2.6821 38 1 2.4192 2.6119 2.2717 39 1 5.8632 1.4784 -1.0290 40 1 5.2860 0.6658 -3.6716 41 1 5.2931 2.4450 -3.6207 42 1 7.4251 0.3663 -1.5436 43 1 7.1670 3.7467 -3.0684 44 1 8.3072 2.9540 -1.8947 45 1 9.5125 3.5120 -5.7237 46 1 8.0138 4.2301 -5.0862 47 1 9.8172 6.1826 -5.5322 48 1 11.0110 9.2352 -6.1619 49 1 8.2182 0.7814 -4.9980 50 1 7.1023 2.1840 -5.2985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278844029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:36 Heat of formation + Delta-G solvation = -162.870025 kcal Electronic energy + Delta-G solvation = -30490.435790 eV Core-core repulsion = 26131.840473 eV Total energy + Delta-G solvation = -4358.595317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87634 -41.01379 -39.76995 -38.65493 -36.94575 -35.90418 -35.56197 -34.68962 -33.31334 -31.76909 -31.61649 -29.40875 -27.60966 -27.27359 -26.49185 -24.05801 -23.67910 -22.96759 -21.62094 -21.03942 -20.99189 -19.91751 -19.15306 -18.26810 -17.91709 -17.48119 -16.99440 -16.80138 -16.58773 -16.55480 -16.38952 -15.95091 -15.66943 -15.48818 -15.26739 -15.09713 -14.93695 -14.66390 -14.32593 -14.15659 -13.69752 -13.50186 -13.44866 -13.35148 -13.28537 -13.01126 -12.96676 -12.93529 -12.86938 -12.47881 -12.44674 -12.28953 -12.14349 -12.03464 -11.84016 -11.73933 -11.50830 -11.42389 -10.98029 -10.36805 -10.33989 -10.27643 -10.03156 -9.69535 -8.47764 -5.96703 1.38615 1.40653 1.44947 1.51598 1.87961 2.03008 2.27450 2.66332 2.66635 2.91587 3.18556 3.22219 3.32624 3.51692 3.64001 3.83724 3.89433 4.00558 4.16048 4.19699 4.27324 4.29571 4.31998 4.40282 4.44013 4.46537 4.52494 4.55125 4.59476 4.67344 4.76459 4.79270 4.82545 4.96234 5.02029 5.09373 5.15843 5.19841 5.25431 5.35848 5.39926 5.40941 5.83681 6.03079 6.03861 6.38355 6.58366 6.67716 7.09472 7.10953 7.54091 8.09516 8.69347 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.002104 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.610161 B =13301.640742 C =14340.638471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.377 6.377 4 C 0.079 3.921 5 H 0.120 0.880 6 C -0.117 4.117 7 C -0.145 4.145 8 C 0.489 3.511 9 O -0.570 6.570 10 N -0.715 5.715 11 C 0.110 3.890 12 C 0.115 3.885 13 O -0.533 6.533 14 C -0.005 4.005 15 N -0.473 5.473 16 C 0.019 3.981 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.020 3.980 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.413 0.587 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.389 0.611 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.107 0.893 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.499 -17.544 10.601 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 O -0.295 6.295 4 C 0.017 3.983 5 H 0.137 0.863 6 C -0.155 4.155 7 C -0.202 4.202 8 C 0.276 3.724 9 O -0.449 6.449 10 N -0.370 5.370 11 C -0.015 4.015 12 C 0.072 3.928 13 O -0.340 6.340 14 C -0.134 4.134 15 N -0.196 5.196 16 C -0.112 4.112 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.109 4.109 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.250 0.750 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.239 0.761 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.127 0.873 46 H 0.098 0.902 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.125 0.875 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.939 -17.663 10.163 26.499 hybrid contribution -0.098 1.336 0.039 1.340 sum -17.037 -16.327 10.203 25.708 Atomic orbital electron populations 1.21733 0.92959 1.03352 1.02501 1.22746 0.96597 0.82773 1.00561 1.88002 1.19247 1.28142 1.94101 1.22255 0.83400 1.02456 0.90164 0.86261 1.21643 1.02262 0.94594 0.96994 1.21690 1.01988 1.02987 0.93536 1.22010 0.82155 0.75121 0.93136 1.90706 1.54484 1.50176 1.49493 1.45850 1.07200 1.75161 1.08828 1.21868 0.92460 1.03383 0.83753 1.22686 0.89422 0.86432 0.94272 1.86612 1.67581 1.49433 1.30404 1.24509 0.93853 0.97004 0.98080 1.68460 1.34291 1.10364 1.06476 1.22404 1.00108 0.91384 0.97332 1.20699 0.85027 0.83586 0.87929 1.90485 1.59412 1.79217 1.21222 1.41942 1.48228 1.14406 1.16528 1.19615 1.30563 0.96467 0.99647 0.90301 1.26054 0.98781 0.99571 0.96951 1.69665 1.46642 1.25874 1.13915 0.84985 0.78333 0.77090 0.77923 1.19764 1.19518 1.19584 1.24249 0.93541 0.98767 0.94333 0.93463 0.89080 0.91486 0.94325 0.90766 0.88398 0.92374 0.90960 0.91688 0.92801 0.74969 0.89992 0.90760 0.76111 0.90990 0.90375 0.87280 0.90247 0.77042 0.91294 0.87479 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.05 0.72 6.44 71.98 0.46 1.19 16 3 O -0.38 -7.36 9.17 -129.99 -1.19 -8.55 16 4 C 0.08 1.16 2.51 29.85 0.07 1.24 16 5 H 0.12 0.96 7.81 -2.39 -0.02 0.94 16 6 C -0.12 -1.54 5.61 30.59 0.17 -1.37 16 7 C -0.14 -1.53 9.76 71.98 0.70 -0.83 16 8 C 0.49 9.88 7.12 87.66 0.62 10.50 16 9 O -0.57 -17.07 16.51 15.97 0.26 -16.80 16 10 N -0.71 -10.88 5.23 -463.06 -2.42 -13.30 16 11 C 0.11 2.00 5.28 86.38 0.46 2.45 16 12 C 0.11 2.36 1.52 -10.15 -0.02 2.34 16 13 O -0.53 -10.83 13.51 -148.98 -2.01 -12.84 16 14 C -0.01 -0.15 6.16 86.41 0.53 0.38 16 15 N -0.47 -15.10 5.95 -915.31 -5.44 -20.55 16 16 C 0.02 0.66 5.31 85.56 0.45 1.11 16 17 C 0.44 20.98 7.59 87.66 0.67 21.65 16 18 O -0.62 -34.05 15.12 -3.07 -0.05 -34.09 16 19 N -0.57 -29.51 5.29 -306.99 -1.62 -31.13 16 20 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.76 7.16 -2.92 -0.02 4.74 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 24 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 28 C 0.02 0.44 7.37 86.40 0.64 1.08 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.69 8.11 -2.38 -0.02 0.67 16 34 H 0.10 0.96 7.76 -2.39 -0.02 0.95 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.05 0.68 7.97 -2.38 -0.02 0.66 16 39 H 0.41 3.86 7.01 -92.71 -0.65 3.21 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.51 8.05 -2.39 -0.02 1.49 16 42 H 0.39 4.49 7.61 -74.06 -0.56 3.93 16 43 H 0.07 2.04 7.67 -2.39 -0.02 2.03 16 44 H 0.08 2.53 8.09 -2.39 -0.02 2.51 16 45 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 46 H 0.08 2.32 7.69 -2.39 -0.02 2.30 16 47 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 48 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 49 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.11 1.89 7.75 -2.39 -0.02 1.87 16 Total: -1.00 -79.91 415.14 -4.36 -84.28 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.98 Total: 37.35 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 6.79 Total: 20.16 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -9.21 Total: -114.44 kcal Atomic # 8 Polarization: -69.30 SS G_CDS: -2.99 Total: -72.29 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -79.91 -4.36 -84.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278844029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.595 kcal (2) G-P(sol) polarization free energy of solvation -79.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds