Wall clock time and date at job start Wed Apr 1 2020 01:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42909 * 109.47248 * 2 1 4 4 C 1.42898 * 114.00005 * 179.14991 * 3 2 1 5 5 H 1.08995 * 109.47250 * 30.10991 * 4 3 2 6 6 C 1.52995 * 109.47111 * 150.11523 * 4 3 2 7 7 C 1.52993 * 109.47384 * 294.73713 * 6 4 3 8 8 C 1.50703 * 109.46925 * 270.11279 * 4 3 2 9 9 O 1.21290 * 120.00096 * 0.02562 * 8 4 3 10 10 N 1.34779 * 120.00199 * 180.27548 * 8 4 3 11 11 C 1.46496 * 119.99911 * 179.72506 * 10 8 4 12 12 C 1.52996 * 109.47037 * 179.97438 * 11 10 8 13 13 O 1.42904 * 112.93623 * 53.43260 * 12 11 10 14 14 C 1.53939 * 113.73811 * 281.73198 * 12 11 10 15 15 N 1.47958 * 86.18136 * 221.91825 * 14 12 11 16 16 C 1.46899 * 110.99859 * 137.58065 * 15 14 12 17 17 C 1.50694 * 109.47088 * 70.64280 * 16 15 14 18 18 O 1.21289 * 120.00361 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99914 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00343 * 179.97438 * 19 17 16 21 21 H 1.08009 * 119.99527 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00180 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99544 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00255 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47202 * 89.99740 * 24 22 20 26 26 H 1.48496 * 109.47130 * 209.99499 * 24 22 20 27 27 H 1.48498 * 109.46874 * 329.99585 * 24 22 20 28 28 C 1.47965 * 90.76318 * 24.68750 * 15 14 12 29 29 H 1.09005 * 109.46794 * 300.00147 * 1 2 3 30 30 H 1.08995 * 109.47333 * 59.99902 * 1 2 3 31 31 H 1.08994 * 109.47011 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47372 * 240.00187 * 2 1 3 33 33 H 1.09003 * 109.47616 * 119.99910 * 2 1 3 34 34 H 1.09004 * 109.46984 * 54.73655 * 6 4 3 35 35 H 1.09006 * 109.47138 * 174.73253 * 6 4 3 36 36 H 1.08998 * 109.47520 * 185.21077 * 7 6 4 37 37 H 1.09002 * 109.47215 * 305.21145 * 7 6 4 38 38 H 1.09006 * 109.47023 * 65.20818 * 7 6 4 39 39 H 0.96994 * 119.99818 * 359.73051 * 10 8 4 40 40 H 1.08994 * 109.47715 * 300.00137 * 11 10 8 41 41 H 1.09004 * 109.46969 * 60.00476 * 11 10 8 42 42 H 0.96694 * 114.00490 * 309.67406 * 13 12 11 43 43 H 1.08999 * 113.75367 * 336.23708 * 14 12 11 44 44 H 1.08997 * 113.76150 * 107.60082 * 14 12 11 45 45 H 1.09006 * 109.46978 * 190.64218 * 16 15 14 46 46 H 1.09002 * 109.46954 * 310.63356 * 16 15 14 47 47 H 0.97002 * 119.99839 * 359.97438 * 19 17 16 48 48 H 0.97009 * 119.99825 * 180.02562 * 23 22 20 49 49 H 1.09005 * 113.75852 * 220.99068 * 28 15 14 50 50 H 1.08997 * 113.85890 * 89.64040 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4307 1.4602 0.0194 5 1 3.8703 0.6002 -0.4858 6 6 3.8505 2.7436 -0.6999 7 6 3.4782 2.6437 -2.1805 8 6 3.9118 1.5041 1.4469 9 8 3.1134 1.4441 2.3580 10 7 5.2287 1.6151 1.7112 11 6 5.6957 1.6638 3.0988 12 6 7.2204 1.7896 3.1197 13 8 7.6997 2.8839 2.3355 14 6 7.9553 0.4637 2.8518 15 7 8.8762 0.8694 3.9364 16 6 9.1892 -0.2665 4.8137 17 6 10.0698 -1.2425 4.0768 18 8 10.4034 -1.0146 2.9332 19 7 10.4858 -2.3692 4.6883 20 6 11.2865 -3.2575 4.0179 21 1 11.5835 -3.0545 2.9995 22 6 11.7158 -4.4188 4.6484 23 7 12.4828 -5.2704 4.0055 24 14 11.2014 -4.7703 6.4095 25 1 9.9292 -5.5363 6.4101 26 1 12.2583 -5.5656 7.0845 27 1 11.0078 -3.4885 7.1338 28 6 7.8280 1.7268 4.5326 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3372 3.5951 -0.2529 35 1 4.9280 2.8779 -0.6044 36 1 3.8590 3.5165 -2.7107 37 1 3.9167 1.7407 -2.6052 38 1 2.3935 2.6024 -2.2804 39 1 5.8672 1.6627 0.9826 40 1 5.2530 2.5238 3.6013 41 1 5.3999 0.7499 3.6141 42 1 7.3424 2.9104 1.4374 43 1 7.3637 -0.4213 3.0861 44 1 8.4273 0.4137 1.8706 45 1 9.7090 0.0929 5.7019 46 1 8.2648 -0.7626 5.1095 47 1 10.2187 -2.5517 5.6028 48 1 12.7822 -6.0814 4.4456 49 1 8.1985 2.6860 4.8944 50 1 7.1985 1.2129 5.2590 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278844030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:40 Heat of formation + Delta-G solvation = -124.502692 kcal Electronic energy + Delta-G solvation = -30525.998786 eV Core-core repulsion = 26169.067201 eV Total energy + Delta-G solvation = -4356.931585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93681 -40.13512 -38.27217 -37.84269 -35.93783 -34.81965 -34.06969 -33.96542 -31.73217 -31.20188 -30.55888 -28.51447 -26.66305 -26.25602 -24.80173 -23.26454 -22.67346 -22.27805 -20.86074 -20.09308 -19.41558 -18.58919 -18.18647 -17.57352 -16.72660 -16.43144 -15.94859 -15.83615 -15.51440 -15.40118 -15.10629 -15.01511 -14.76582 -14.51457 -14.21244 -14.14425 -13.62668 -13.32639 -13.22133 -13.06174 -12.89111 -12.78086 -12.55264 -12.47063 -12.31107 -12.20518 -12.16667 -11.83025 -11.74130 -11.55788 -11.45268 -11.21482 -11.16586 -10.88450 -10.71641 -10.62826 -10.05827 -10.00476 -9.60326 -9.58734 -9.49486 -8.80432 -8.40283 -8.21466 -6.34583 -3.86151 2.22725 2.59446 2.99892 3.03564 3.12382 3.26454 3.57341 3.68950 3.88679 4.06968 4.10109 4.24321 4.38703 4.43054 4.46552 4.57933 4.72810 4.76783 4.87405 4.95932 5.03357 5.05365 5.15119 5.16182 5.25772 5.32452 5.34257 5.39281 5.48330 5.49293 5.53497 5.59984 5.61812 5.62221 5.71821 5.79454 5.83382 5.87738 5.94122 6.02691 6.43402 6.64990 6.97087 7.04670 7.34460 7.54049 7.83046 8.09885 8.55926 8.91161 9.38415 9.78547 10.78450 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.002173 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.940574 B =12882.697167 C =13690.963306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.075 3.925 5 H 0.090 0.910 6 C -0.116 4.116 7 C -0.150 4.150 8 C 0.491 3.509 9 O -0.523 6.523 10 N -0.728 5.728 11 C 0.101 3.899 12 C 0.088 3.912 13 O -0.520 6.520 14 C -0.002 4.002 15 N -0.439 5.439 16 C 0.004 3.996 17 C 0.452 3.548 18 O -0.560 6.560 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.018 3.982 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.399 0.601 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.371 0.629 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.056 0.944 47 H 0.370 0.630 48 H 0.274 0.726 49 H 0.102 0.898 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.319 14.326 -6.157 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.013 3.987 5 H 0.107 0.893 6 C -0.154 4.154 7 C -0.207 4.207 8 C 0.277 3.723 9 O -0.397 6.397 10 N -0.383 5.383 11 C -0.023 4.023 12 C 0.046 3.954 13 O -0.324 6.324 14 C -0.131 4.131 15 N -0.162 5.162 16 C -0.128 4.128 17 C 0.238 3.762 18 O -0.442 6.442 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.112 4.112 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.234 0.766 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.219 0.781 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.074 0.926 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.120 0.880 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.707 14.768 -5.868 26.102 hybrid contribution -0.722 -1.410 1.059 1.905 sum -21.429 13.358 -4.808 25.705 Atomic orbital electron populations 1.21705 0.93373 1.02345 1.03162 1.22604 0.96046 0.83350 1.00219 1.87992 1.17964 1.26962 1.94250 1.22093 0.83995 1.00881 0.91698 0.89279 1.21607 1.01373 0.95919 0.96505 1.21726 1.02555 1.02020 0.94406 1.21489 0.82110 0.76219 0.92514 1.90729 1.54021 1.47926 1.47048 1.45967 1.07748 1.75861 1.08771 1.22032 0.93626 1.03424 0.83261 1.23038 0.89697 0.88249 0.94449 1.86643 1.71109 1.47057 1.27639 1.24554 0.93542 0.95212 0.99818 1.68485 1.28849 1.12816 1.06020 1.22556 0.99614 0.93157 0.97493 1.19544 0.85575 0.83008 0.88087 1.90561 1.59644 1.75940 1.18047 1.42220 1.46815 1.19806 1.14193 1.19418 1.24742 0.98628 1.00559 0.86298 1.25042 0.96861 0.95910 0.98363 1.69624 1.34014 1.11141 1.37280 0.86673 0.79316 0.78865 0.84553 1.19665 1.20104 1.19471 1.24126 0.93097 1.00490 0.93451 0.91625 0.91909 0.91013 0.93218 0.92944 0.90268 0.90094 0.92043 0.92552 0.91786 0.76649 0.90212 0.90182 0.78144 0.90789 0.88075 0.88749 0.92639 0.79717 0.91587 0.88011 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.46 6.42 37.16 0.24 0.69 16 3 O -0.35 -3.52 9.17 -55.14 -0.51 -4.03 16 4 C 0.08 0.60 2.52 -27.88 -0.07 0.53 16 5 H 0.09 0.55 7.80 -51.93 -0.40 0.14 16 6 C -0.12 -0.68 5.58 -26.74 -0.15 -0.83 16 7 C -0.15 -0.78 9.76 37.15 0.36 -0.42 16 8 C 0.49 5.05 7.19 -10.98 -0.08 4.97 16 9 O -0.52 -7.62 16.47 -14.36 -0.24 -7.85 16 10 N -0.73 -5.89 5.19 -60.30 -0.31 -6.20 16 11 C 0.10 0.95 5.28 -4.05 -0.02 0.93 16 12 C 0.09 0.94 1.52 -89.69 -0.14 0.80 16 13 O -0.52 -5.62 13.50 -35.23 -0.48 -6.10 16 14 C 0.00 -0.03 6.16 -2.77 -0.02 -0.05 16 15 N -0.44 -6.90 5.95 -239.63 -1.43 -8.32 16 16 C 0.00 0.06 5.31 -4.98 -0.03 0.04 16 17 C 0.45 10.19 7.59 -10.99 -0.08 10.11 16 18 O -0.56 -14.87 15.12 5.55 0.08 -14.78 16 19 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 20 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 21 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 24 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 28 C 0.02 0.20 7.37 -2.76 -0.02 0.18 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.33 8.10 -51.93 -0.42 -0.09 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.31 7.41 -51.93 -0.38 -0.07 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.06 0.39 7.97 -51.93 -0.41 -0.02 16 39 H 0.40 2.20 6.65 -40.82 -0.27 1.93 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 42 H 0.37 2.48 7.61 45.56 0.35 2.83 16 43 H 0.07 1.00 7.67 -51.93 -0.40 0.60 16 44 H 0.10 1.57 8.09 -51.93 -0.42 1.15 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 47 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 48 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.08 0.77 7.75 -51.93 -0.40 0.37 16 LS Contribution 411.23 15.07 6.20 6.20 Total: -1.00 -37.25 411.23 -8.15 -45.40 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -7.61 Total: 11.43 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 0.13 Total: 8.58 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -1.02 Total: -53.37 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.13 Total: -32.76 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.25 -8.15 -45.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278844030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.107 kcal (2) G-P(sol) polarization free energy of solvation -37.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds