Wall clock time and date at job start Wed Apr 1 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42909 * 109.47248 * 2 1 4 4 C 1.42898 * 114.00005 * 179.14991 * 3 2 1 5 5 H 1.08995 * 109.47250 * 30.10991 * 4 3 2 6 6 C 1.52995 * 109.47111 * 150.11523 * 4 3 2 7 7 C 1.52993 * 109.47384 * 294.73713 * 6 4 3 8 8 C 1.50703 * 109.46925 * 270.11279 * 4 3 2 9 9 O 1.21290 * 120.00096 * 0.02562 * 8 4 3 10 10 N 1.34779 * 120.00199 * 180.27548 * 8 4 3 11 11 C 1.46496 * 119.99911 * 179.72506 * 10 8 4 12 12 C 1.52996 * 109.47037 * 179.97438 * 11 10 8 13 13 O 1.42904 * 112.93623 * 53.43260 * 12 11 10 14 14 C 1.53939 * 113.73811 * 281.73198 * 12 11 10 15 15 N 1.47958 * 86.18136 * 221.91825 * 14 12 11 16 16 C 1.46899 * 110.99859 * 137.58065 * 15 14 12 17 17 C 1.50694 * 109.47088 * 70.64280 * 16 15 14 18 18 O 1.21289 * 120.00361 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99914 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00343 * 179.97438 * 19 17 16 21 21 H 1.08009 * 119.99527 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00180 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99544 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00255 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47202 * 89.99740 * 24 22 20 26 26 H 1.48496 * 109.47130 * 209.99499 * 24 22 20 27 27 H 1.48498 * 109.46874 * 329.99585 * 24 22 20 28 28 C 1.47965 * 90.76318 * 24.68750 * 15 14 12 29 29 H 1.09005 * 109.46794 * 300.00147 * 1 2 3 30 30 H 1.08995 * 109.47333 * 59.99902 * 1 2 3 31 31 H 1.08994 * 109.47011 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47372 * 240.00187 * 2 1 3 33 33 H 1.09003 * 109.47616 * 119.99910 * 2 1 3 34 34 H 1.09004 * 109.46984 * 54.73655 * 6 4 3 35 35 H 1.09006 * 109.47138 * 174.73253 * 6 4 3 36 36 H 1.08998 * 109.47520 * 185.21077 * 7 6 4 37 37 H 1.09002 * 109.47215 * 305.21145 * 7 6 4 38 38 H 1.09006 * 109.47023 * 65.20818 * 7 6 4 39 39 H 0.96994 * 119.99818 * 359.73051 * 10 8 4 40 40 H 1.08994 * 109.47715 * 300.00137 * 11 10 8 41 41 H 1.09004 * 109.46969 * 60.00476 * 11 10 8 42 42 H 0.96694 * 114.00490 * 309.67406 * 13 12 11 43 43 H 1.08999 * 113.75367 * 336.23708 * 14 12 11 44 44 H 1.08997 * 113.76150 * 107.60082 * 14 12 11 45 45 H 1.09006 * 109.46978 * 190.64218 * 16 15 14 46 46 H 1.09002 * 109.46954 * 310.63356 * 16 15 14 47 47 H 0.97002 * 119.99839 * 359.97438 * 19 17 16 48 48 H 0.97009 * 119.99825 * 180.02562 * 23 22 20 49 49 H 1.09005 * 113.75852 * 220.99068 * 28 15 14 50 50 H 1.08997 * 113.85890 * 89.64040 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4307 1.4602 0.0194 5 1 3.8703 0.6002 -0.4858 6 6 3.8505 2.7436 -0.6999 7 6 3.4782 2.6437 -2.1805 8 6 3.9118 1.5041 1.4469 9 8 3.1134 1.4441 2.3580 10 7 5.2287 1.6151 1.7112 11 6 5.6957 1.6638 3.0988 12 6 7.2204 1.7896 3.1197 13 8 7.6997 2.8839 2.3355 14 6 7.9553 0.4637 2.8518 15 7 8.8762 0.8694 3.9364 16 6 9.1892 -0.2665 4.8137 17 6 10.0698 -1.2425 4.0768 18 8 10.4034 -1.0146 2.9332 19 7 10.4858 -2.3692 4.6883 20 6 11.2865 -3.2575 4.0179 21 1 11.5835 -3.0545 2.9995 22 6 11.7158 -4.4188 4.6484 23 7 12.4828 -5.2704 4.0055 24 14 11.2014 -4.7703 6.4095 25 1 9.9292 -5.5363 6.4101 26 1 12.2583 -5.5656 7.0845 27 1 11.0078 -3.4885 7.1338 28 6 7.8280 1.7268 4.5326 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3372 3.5951 -0.2529 35 1 4.9280 2.8779 -0.6044 36 1 3.8590 3.5165 -2.7107 37 1 3.9167 1.7407 -2.6052 38 1 2.3935 2.6024 -2.2804 39 1 5.8672 1.6627 0.9826 40 1 5.2530 2.5238 3.6013 41 1 5.3999 0.7499 3.6141 42 1 7.3424 2.9104 1.4374 43 1 7.3637 -0.4213 3.0861 44 1 8.4273 0.4137 1.8706 45 1 9.7090 0.0929 5.7019 46 1 8.2648 -0.7626 5.1095 47 1 10.2187 -2.5517 5.6028 48 1 12.7822 -6.0814 4.4456 49 1 8.1985 2.6860 4.8944 50 1 7.1985 1.2129 5.2590 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278844030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:39 Heat of formation + Delta-G solvation = -158.062756 kcal Electronic energy + Delta-G solvation = -30527.454059 eV Core-core repulsion = 26169.067201 eV Total energy + Delta-G solvation = -4358.386858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.88991 -41.03140 -39.90345 -38.65939 -36.95663 -35.95589 -35.57826 -34.66649 -33.77958 -31.78474 -31.68082 -29.45944 -27.64846 -27.27086 -26.39264 -24.00838 -23.65124 -22.97140 -21.59303 -21.28088 -20.99782 -20.25603 -19.16735 -18.26169 -17.91837 -17.45735 -17.06480 -16.94329 -16.71585 -16.49111 -16.35935 -15.86162 -15.68411 -15.41976 -15.27453 -15.02828 -14.86878 -14.64553 -14.40165 -14.36515 -14.12248 -13.60041 -13.48059 -13.37490 -13.30053 -13.03682 -12.98195 -12.94885 -12.86954 -12.49185 -12.43226 -12.29988 -12.02570 -11.99721 -11.84187 -11.72616 -11.52618 -11.45258 -10.97422 -10.44621 -10.34077 -10.28086 -10.26626 -9.69938 -8.43012 -6.03907 1.28909 1.33571 1.42983 1.45187 1.88048 1.92869 2.21227 2.58138 2.66225 2.83045 3.12982 3.19508 3.22956 3.50649 3.63567 3.84136 3.90524 3.97103 4.10325 4.13828 4.25529 4.28729 4.33415 4.35808 4.42300 4.44778 4.50005 4.54623 4.61074 4.67360 4.77806 4.78965 4.84119 4.96215 5.00568 5.09591 5.16994 5.20114 5.24118 5.35396 5.42856 5.51346 5.86352 5.96818 6.01649 6.36954 6.57326 6.67744 6.86098 7.08822 7.37298 7.93959 8.74515 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.002173 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.940574 B =12882.697167 C =13690.963306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.374 6.374 4 C 0.074 3.926 5 H 0.110 0.890 6 C -0.113 4.113 7 C -0.147 4.147 8 C 0.490 3.510 9 O -0.570 6.570 10 N -0.715 5.715 11 C 0.110 3.890 12 C 0.112 3.888 13 O -0.534 6.534 14 C -0.008 4.008 15 N -0.476 5.476 16 C 0.015 3.985 17 C 0.451 3.549 18 O -0.608 6.608 19 N -0.592 5.592 20 C -0.327 4.327 21 H 0.055 0.945 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.232 1.232 28 C 0.022 3.978 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.412 0.588 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.388 0.612 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.120 0.880 46 H 0.091 0.909 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.107 0.893 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.926 15.251 -4.168 27.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 O -0.292 6.292 4 C 0.012 3.988 5 H 0.127 0.873 6 C -0.151 4.151 7 C -0.205 4.205 8 C 0.277 3.723 9 O -0.448 6.448 10 N -0.371 5.371 11 C -0.015 4.015 12 C 0.069 3.931 13 O -0.341 6.341 14 C -0.137 4.137 15 N -0.199 5.199 16 C -0.116 4.116 17 C 0.238 3.762 18 O -0.492 6.492 19 N -0.234 5.234 20 C -0.456 4.456 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.155 1.155 28 C -0.106 4.106 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.250 0.750 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.238 0.762 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.137 0.863 46 H 0.109 0.891 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.125 0.875 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.308 15.729 -3.906 27.574 hybrid contribution -0.161 -1.638 0.268 1.667 sum -22.469 14.091 -3.638 26.771 Atomic orbital electron populations 1.21719 0.92687 1.03296 1.02680 1.22723 0.96766 0.82913 1.00297 1.87976 1.19168 1.27820 1.94196 1.22309 0.83311 1.02724 0.90449 0.87262 1.21653 1.02619 0.94277 0.96524 1.21706 1.01868 1.02905 0.93971 1.21957 0.82126 0.75137 0.93056 1.90706 1.55276 1.50346 1.48518 1.45862 1.07524 1.74761 1.08957 1.21889 0.92417 1.03368 0.83812 1.22729 0.89894 0.86398 0.94035 1.86612 1.71697 1.46795 1.29033 1.24541 0.93699 0.97201 0.98280 1.68458 1.31273 1.13133 1.07077 1.22513 0.99780 0.92113 0.97199 1.20821 0.84633 0.82995 0.87711 1.90541 1.61144 1.76940 1.20616 1.42055 1.46720 1.19689 1.14918 1.18984 1.26966 1.00770 0.98906 0.92676 1.26114 0.96108 0.94732 1.04468 1.69806 1.35500 1.11959 1.40170 0.85376 0.79140 0.80314 0.76779 1.18097 1.20047 1.15500 1.24256 0.92081 1.00065 0.94196 0.93154 0.91269 0.89379 0.91255 0.94606 0.91521 0.87763 0.91075 0.91731 0.92984 0.75040 0.90051 0.90423 0.76176 0.90566 0.90787 0.86252 0.89085 0.77521 0.91141 0.87481 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.05 0.80 6.42 71.98 0.46 1.26 16 3 O -0.37 -7.25 9.17 -129.94 -1.19 -8.44 16 4 C 0.07 1.08 2.52 29.85 0.08 1.15 16 5 H 0.11 1.14 7.80 -2.39 -0.02 1.12 16 6 C -0.11 -1.14 5.58 30.59 0.17 -0.97 16 7 C -0.15 -1.29 9.76 71.98 0.70 -0.59 16 8 C 0.49 9.60 7.19 87.66 0.63 10.23 16 9 O -0.57 -16.50 16.47 15.97 0.26 -16.23 16 10 N -0.72 -10.34 5.19 -463.06 -2.40 -12.74 16 11 C 0.11 1.83 5.28 86.38 0.46 2.28 16 12 C 0.11 2.14 1.52 -10.15 -0.02 2.12 16 13 O -0.53 -10.46 13.50 -148.98 -2.01 -12.47 16 14 C -0.01 -0.21 6.16 86.41 0.53 0.32 16 15 N -0.48 -14.02 5.95 -915.24 -5.44 -19.46 16 16 C 0.02 0.46 5.31 85.56 0.45 0.92 16 17 C 0.45 20.19 7.59 87.65 0.67 20.85 16 18 O -0.61 -33.45 15.12 -3.06 -0.05 -33.49 16 19 N -0.59 -27.71 5.09 -306.99 -1.56 -29.27 16 20 C -0.33 -19.07 10.16 84.04 0.85 -18.21 16 21 H 0.06 3.83 7.39 -2.91 -0.02 3.81 16 22 C -0.02 -0.86 5.50 84.92 0.47 -0.39 16 23 N -0.93 -56.08 13.96 21.66 0.30 -55.78 16 24 Si 0.96 38.49 27.74 68.60 1.90 40.39 16 25 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 26 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.23 -7.78 6.52 99.48 0.65 -7.14 16 28 C 0.02 0.44 7.37 86.40 0.64 1.08 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 33 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.10 0.53 7.41 -2.38 -0.02 0.51 16 36 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.05 0.59 7.97 -2.38 -0.02 0.57 16 39 H 0.41 3.70 6.65 -92.71 -0.62 3.08 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.39 8.04 -2.38 -0.02 1.37 16 42 H 0.39 4.36 7.61 -74.06 -0.56 3.79 16 43 H 0.08 1.96 7.67 -2.39 -0.02 1.94 16 44 H 0.07 2.34 8.09 -2.39 -0.02 2.33 16 45 H 0.12 3.02 8.14 -2.38 -0.02 3.00 16 46 H 0.09 2.12 7.69 -2.39 -0.02 2.10 16 47 H 0.39 15.02 5.76 -92.71 -0.53 14.49 16 48 H 0.28 15.31 8.31 -92.70 -0.77 14.54 16 49 H 0.11 2.03 8.14 -2.38 -0.02 2.02 16 50 H 0.11 1.57 7.75 -2.39 -0.02 1.55 16 Total: -1.00 -87.57 411.23 -4.17 -91.74 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.81 Total: 37.01 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 6.83 Total: 18.76 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -9.11 Total: -117.26 kcal Atomic # 8 Polarization: -67.66 SS G_CDS: -2.99 Total: -70.64 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.90 Total: 40.39 kcal Total: -87.57 -4.17 -91.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278844030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.323 kcal (2) G-P(sol) polarization free energy of solvation -87.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds