Wall clock time and date at job start Wed Apr 1 2020 02:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99894 * 2 1 4 4 C 1.53003 * 109.46829 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47043 * 179.97438 * 4 3 2 6 6 O 1.21285 * 120.00228 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00110 * 179.97438 * 5 4 3 8 8 C 1.47159 * 120.98366 * 0.02700 * 7 5 4 9 9 C 1.53292 * 108.38714 * 129.44247 * 8 7 5 10 10 O 1.42961 * 109.22599 * 52.30112 * 9 8 7 11 11 C 1.42958 * 114.16473 * 297.42140 * 10 9 8 12 12 H 1.09005 * 109.55598 * 302.62985 * 11 10 9 13 13 C 1.53000 * 109.51147 * 182.50098 * 11 10 9 14 14 H 1.08999 * 109.47431 * 185.24896 * 13 11 10 15 15 C 1.52996 * 109.47280 * 305.25498 * 13 11 10 16 16 N 1.46901 * 109.46776 * 65.25399 * 13 11 10 17 17 C 1.46902 * 110.99844 * 154.99859 * 16 13 11 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 13 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00042 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00013 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 89.99599 * 25 23 21 27 27 H 1.48494 * 109.47201 * 209.99761 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99936 * 25 23 21 29 29 C 1.47150 * 120.98502 * 179.97438 * 7 5 4 30 30 H 1.09004 * 109.46955 * 60.00379 * 1 2 3 31 31 H 1.08997 * 109.47313 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47291 * 300.00367 * 1 2 3 33 33 H 1.08987 * 109.47457 * 59.99968 * 3 2 1 34 34 H 1.09003 * 109.47326 * 299.99671 * 3 2 1 35 35 H 1.09000 * 109.47484 * 59.99875 * 4 3 2 36 36 H 1.08997 * 109.47188 * 299.99772 * 4 3 2 37 37 H 1.09000 * 109.67608 * 249.17004 * 8 7 5 38 38 H 1.09004 * 109.67975 * 9.71137 * 8 7 5 39 39 H 1.09001 * 109.50799 * 172.22813 * 9 8 7 40 40 H 1.09009 * 109.50910 * 292.32424 * 9 8 7 41 41 H 1.08998 * 109.47251 * 59.99907 * 15 13 11 42 42 H 1.09001 * 109.47292 * 179.97438 * 15 13 11 43 43 H 1.09001 * 109.46914 * 299.99429 * 15 13 11 44 44 H 1.00902 * 111.00235 * 31.05096 * 16 13 11 45 45 H 1.09004 * 109.47131 * 60.00016 * 17 16 13 46 46 H 1.08994 * 109.47471 * 299.99766 * 17 16 13 47 47 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 48 48 H 0.97005 * 120.00014 * 180.02562 * 24 23 21 49 49 H 1.08999 * 109.68223 * 110.83034 * 29 7 5 50 50 H 1.09005 * 109.71192 * 350.30023 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5613 -0.0013 6 8 3.4356 3.5426 -0.0017 7 7 5.4888 2.7022 -0.0014 8 6 6.3740 1.5267 -0.0015 9 6 7.4031 1.6964 -1.1250 10 8 8.0389 2.9699 -0.9925 11 6 7.1522 4.0834 -1.1255 12 1 6.6487 4.0356 -2.0911 13 6 7.9492 5.3858 -1.0286 14 1 7.2634 6.2330 -1.0364 15 6 8.7559 5.3946 0.2714 16 7 8.8643 5.4861 -2.1734 17 6 9.1948 6.8881 -2.4619 18 6 10.1337 6.9509 -3.6390 19 8 10.4918 5.9284 -4.1844 20 7 10.5705 8.1436 -4.0897 21 6 11.4201 8.2011 -5.1642 22 1 11.7390 7.2906 -5.6497 23 6 11.8709 9.4307 -5.6284 24 7 12.6849 9.4857 -6.6586 25 14 11.3199 11.0054 -4.7882 26 1 12.2727 11.3461 -3.7013 27 1 11.2853 12.1098 -5.7802 28 1 9.9637 10.8121 -4.2149 29 6 6.1103 4.0360 -0.0026 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6436 0.8891 37 1 6.8865 1.4530 0.9577 38 1 5.7867 0.6248 -0.1746 39 1 8.1513 0.9068 -1.0555 40 1 6.9007 1.6380 -2.0906 41 1 9.4417 4.5475 0.2791 42 1 9.3241 6.3222 0.3402 43 1 8.0769 5.3202 1.1208 44 1 8.4773 5.0312 -2.9867 45 1 9.6743 7.3350 -1.5909 46 1 8.2820 7.4360 -2.6952 47 1 10.2839 8.9614 -3.6538 48 1 12.9999 10.3441 -6.9825 49 1 6.5961 4.2154 0.9565 50 1 5.3487 4.7963 -0.1762 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282895847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:51 Heat of formation + Delta-G solvation = -144.894437 kcal Electronic energy + Delta-G solvation = -30216.894561 eV Core-core repulsion = 25859.078724 eV Total energy + Delta-G solvation = -4357.815837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.89664 -39.21053 -38.41357 -38.08890 -36.31269 -35.03535 -33.95010 -32.78234 -31.89276 -31.58279 -29.65207 -28.12067 -26.99701 -26.79105 -25.03535 -23.90912 -23.72418 -22.36173 -20.34736 -19.53444 -19.35933 -18.36375 -17.99322 -17.09397 -16.87363 -16.55398 -16.28637 -16.11573 -15.76491 -15.40513 -15.27066 -15.20294 -15.00530 -14.77182 -14.20309 -14.13544 -14.04794 -13.62646 -13.23992 -13.20868 -12.88812 -12.80796 -12.57923 -12.30332 -12.24328 -12.10859 -11.97430 -11.89621 -11.63912 -11.60344 -11.43849 -11.18706 -11.00669 -10.79856 -10.57801 -10.39749 -10.21740 -10.16281 -9.95603 -9.54959 -8.96311 -8.54702 -8.16905 -8.10330 -6.29032 -3.80331 2.12488 2.28714 3.03986 3.08540 3.16448 3.27007 3.42398 3.76968 3.95351 4.09899 4.12209 4.39429 4.42960 4.48200 4.55567 4.62321 4.70692 4.79164 4.83762 4.87750 4.88857 4.90700 4.96038 5.15790 5.20660 5.22135 5.24941 5.25758 5.28881 5.30885 5.40255 5.42598 5.55674 5.67586 5.75374 5.85665 5.90402 5.95804 5.98316 6.42416 6.61315 6.83663 6.89527 7.15749 7.59237 7.61350 7.64293 8.16962 8.62335 8.97401 9.44856 9.85664 10.84165 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021383 B = 0.001786 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.155662 B =15674.656899 C =15960.805933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.139 4.139 5 C 0.522 3.478 6 O -0.540 6.540 7 N -0.614 5.614 8 C 0.069 3.931 9 C 0.045 3.955 10 O -0.349 6.349 11 C 0.080 3.920 12 H 0.063 0.937 13 C 0.094 3.906 14 H 0.056 0.944 15 C -0.138 4.138 16 N -0.654 5.654 17 C 0.047 3.953 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.082 3.918 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.351 0.649 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.084 0.916 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.274 -16.287 18.453 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.179 4.179 5 C 0.310 3.690 6 O -0.417 6.417 7 N -0.348 5.348 8 C -0.054 4.054 9 C -0.033 4.033 10 O -0.267 6.267 11 C 0.021 3.979 12 H 0.081 0.919 13 C -0.017 4.017 14 H 0.074 0.926 15 C -0.196 4.196 16 N -0.288 5.288 17 C -0.086 4.086 18 C 0.237 3.763 19 O -0.444 6.444 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.041 4.041 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.171 0.829 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.083 0.917 49 H 0.102 0.898 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.411 -16.581 18.326 32.053 hybrid contribution -1.564 1.843 0.069 2.418 sum -21.975 -14.738 18.395 32.226 Atomic orbital electron populations 1.22747 0.80380 1.02869 1.00312 1.87793 1.20248 1.27861 1.95591 1.22160 0.91704 0.84363 1.01902 1.21497 0.95627 0.95044 1.05702 1.20428 0.81616 0.91261 0.75692 1.90726 1.60273 1.40860 1.49860 1.48128 1.05382 1.07606 1.73709 1.22590 0.93226 0.88359 1.01224 1.22980 0.96103 0.87477 0.96773 1.88163 1.33166 1.12501 1.92897 1.22617 0.90120 0.87991 0.97177 0.91948 1.21526 0.92949 0.93326 0.93854 0.92608 1.21778 1.00223 1.03242 0.94338 1.60064 1.46268 1.13929 1.08507 1.21790 0.98180 0.90034 0.98617 1.19696 0.85690 0.84249 0.86686 1.90571 1.60378 1.33644 1.59829 1.42208 1.44303 1.06214 1.30416 1.19435 1.21441 0.96485 1.05961 0.86296 1.25030 0.96824 0.97834 0.96469 1.69624 1.32336 1.26150 1.24114 0.86670 0.78965 0.83775 0.79952 1.19602 1.20227 1.19549 1.22413 0.96567 0.84845 1.00243 0.93841 0.89416 0.93887 0.92325 0.92286 0.87818 0.87835 0.89973 0.88616 0.87211 0.92593 0.90705 0.92560 0.92967 0.82905 0.89385 0.93845 0.79716 0.91651 0.89792 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.40 -3.19 10.70 -35.23 -0.38 -3.57 16 3 C 0.08 0.59 5.23 37.16 0.19 0.78 16 4 C -0.14 -0.91 4.44 -27.88 -0.12 -1.03 16 5 C 0.52 4.89 7.71 -10.99 -0.08 4.81 16 6 O -0.54 -7.00 15.45 5.55 0.09 -6.91 16 7 N -0.61 -5.15 3.02 -172.29 -0.52 -5.67 16 8 C 0.07 0.40 6.54 -3.53 -0.02 0.38 16 9 C 0.04 0.34 6.98 37.31 0.26 0.60 16 10 O -0.35 -3.90 9.45 -35.23 -0.33 -4.24 16 11 C 0.08 0.85 2.42 -26.60 -0.06 0.78 16 12 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 13 C 0.09 1.10 2.49 -67.71 -0.17 0.93 16 14 H 0.06 0.60 7.80 -51.93 -0.40 0.19 16 15 C -0.14 -1.52 8.98 37.16 0.33 -1.19 16 16 N -0.65 -10.27 5.89 -107.99 -0.64 -10.90 16 17 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 18 C 0.45 10.36 7.82 -10.98 -0.09 10.27 16 19 O -0.56 -15.32 15.78 5.55 0.09 -15.23 16 20 N -0.59 -14.24 5.09 -10.96 -0.06 -14.30 16 21 C -0.30 -8.70 10.16 -14.93 -0.15 -8.86 16 22 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.96 13.96 55.50 0.77 -25.18 16 25 Si 0.88 19.52 27.74 -169.99 -4.71 14.81 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 29 C 0.08 0.76 5.82 -3.55 -0.02 0.74 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.47 8.10 -51.94 -0.42 0.05 16 34 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 35 H 0.10 0.55 7.66 -51.93 -0.40 0.15 16 36 H 0.10 0.51 8.01 -51.93 -0.42 0.10 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.33 6.05 -51.93 -0.31 0.01 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 41 H 0.07 0.95 7.55 -51.93 -0.39 0.55 16 42 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 43 H 0.05 0.46 6.42 -51.93 -0.33 0.13 16 44 H 0.35 5.81 7.98 -39.29 -0.31 5.49 16 45 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 46 H 0.04 0.63 8.05 -51.93 -0.42 0.22 16 47 H 0.37 7.81 5.76 -40.82 -0.24 7.58 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.08 0.73 6.27 -51.93 -0.33 0.40 16 50 H 0.10 1.03 7.08 -51.93 -0.37 0.66 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -36.17 401.19 -6.63 -42.80 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -8.04 Total: 11.04 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 1.05 Total: 11.30 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.44 Total: -56.05 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.54 Total: -29.95 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.17 -6.63 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282895847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.093 kcal (2) G-P(sol) polarization free energy of solvation -36.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds