Wall clock time and date at job start Wed Apr 1 2020 02:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00400 * 2 1 4 4 C 1.52995 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.47001 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00020 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00056 * 179.97438 * 5 4 3 8 8 C 1.47149 * 120.98005 * 359.97438 * 7 5 4 9 9 C 1.53297 * 108.38256 * 129.43936 * 8 7 5 10 10 O 1.42958 * 109.22557 * 52.29985 * 9 8 7 11 11 C 1.42965 * 114.16522 * 297.42099 * 10 9 8 12 12 H 1.09000 * 109.51383 * 302.60503 * 11 10 9 13 13 C 1.53004 * 109.51000 * 182.50430 * 11 10 9 14 14 H 1.08999 * 109.46819 * 181.66062 * 13 11 10 15 15 C 1.53001 * 109.47168 * 61.66632 * 13 11 10 16 16 N 1.46896 * 109.47268 * 301.66501 * 13 11 10 17 17 C 1.46906 * 110.99886 * 206.26859 * 16 13 11 18 18 C 1.50699 * 109.46781 * 179.97438 * 17 16 13 19 19 O 1.21293 * 120.00125 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99843 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00074 * 179.73011 * 20 18 17 22 22 H 1.07999 * 119.99939 * 0.27372 * 21 20 18 23 23 C 1.38956 * 119.99798 * 180.27810 * 21 20 18 24 24 N 1.31410 * 120.00120 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99544 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47014 * 90.00266 * 25 23 21 27 27 H 1.48498 * 109.46736 * 209.99650 * 25 23 21 28 28 H 1.48499 * 109.47466 * 329.99679 * 25 23 21 29 29 C 1.47168 * 120.94374 * 179.97438 * 7 5 4 30 30 H 1.08998 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47164 * 299.99923 * 1 2 3 32 32 H 1.09007 * 109.47353 * 59.99824 * 1 2 3 33 33 H 1.09001 * 109.46852 * 59.99816 * 3 2 1 34 34 H 1.08999 * 109.46921 * 300.00075 * 3 2 1 35 35 H 1.09001 * 109.47488 * 60.00047 * 4 3 2 36 36 H 1.08999 * 109.47106 * 299.99803 * 4 3 2 37 37 H 1.08996 * 109.68503 * 9.71021 * 8 7 5 38 38 H 1.09007 * 109.67999 * 249.15671 * 8 7 5 39 39 H 1.09005 * 109.50894 * 292.37153 * 9 8 7 40 40 H 1.09001 * 109.51660 * 172.22601 * 9 8 7 41 41 H 1.09000 * 109.47297 * 59.99535 * 15 13 11 42 42 H 1.08997 * 109.46895 * 179.97438 * 15 13 11 43 43 H 1.09000 * 109.46880 * 299.99999 * 15 13 11 44 44 H 1.00902 * 110.99971 * 330.21494 * 16 13 11 45 45 H 1.09002 * 109.46914 * 59.99935 * 17 16 13 46 46 H 1.09000 * 109.47070 * 299.99763 * 17 16 13 47 47 H 0.97000 * 120.00200 * 0.02562 * 20 18 17 48 48 H 0.96996 * 120.00048 * 180.02562 * 24 23 21 49 49 H 1.08993 * 109.64679 * 110.81421 * 29 7 5 50 50 H 1.09010 * 109.72619 * 350.26130 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1485 2.5613 0.0000 6 8 3.4356 3.5425 0.0004 7 7 5.4888 2.7021 0.0001 8 6 6.3739 1.5266 0.0002 9 6 7.4031 1.6963 -1.1232 10 8 8.0389 2.9698 -0.9908 11 6 7.1522 4.0833 -1.1239 12 1 6.6496 4.0351 -2.0899 13 6 7.9493 5.3857 -1.0270 14 1 7.2690 6.2343 -1.0990 15 6 8.9651 5.4482 -2.1695 16 7 8.6563 5.4326 0.2598 17 6 8.9012 6.8202 0.6757 18 6 9.6258 6.8280 1.9970 19 8 9.9107 5.7808 2.5387 20 7 9.9583 7.9987 2.5762 21 6 10.6126 8.0059 3.7810 22 1 10.8656 7.0735 4.2637 23 6 10.9503 9.2130 4.3809 24 7 10.6428 10.3475 3.7933 25 14 11.8412 9.2228 6.0228 26 1 13.3078 9.2131 5.7901 27 1 11.4684 10.4441 6.7809 28 1 11.4557 8.0192 6.8025 29 6 6.1095 4.0365 0.0002 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8568 0.6438 -0.8908 36 1 3.8574 0.6435 0.8891 37 1 5.7867 0.6248 -0.1730 38 1 6.8864 1.4530 0.9594 39 1 6.9007 1.6388 -2.0889 40 1 8.1514 0.9068 -1.0539 41 1 8.4406 5.4134 -3.1243 42 1 9.5326 6.3762 -2.1007 43 1 9.6454 4.5996 -2.0975 44 1 8.1485 4.9267 0.9700 45 1 7.9496 7.3414 0.7804 46 1 9.5099 7.3227 -0.0760 47 1 9.7308 8.8361 2.1428 48 1 10.8788 11.1900 4.2120 49 1 6.5947 4.2150 0.9597 50 1 5.3477 4.7967 -0.1735 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282895849.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:58 Heat of formation + Delta-G solvation = -150.537580 kcal Electronic energy + Delta-G solvation = -30556.436225 eV Core-core repulsion = 26198.375683 eV Total energy + Delta-G solvation = -4358.060542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81451 -39.14632 -38.22563 -37.99938 -36.20653 -34.99042 -33.87374 -32.53755 -31.61643 -31.11298 -29.87467 -28.31724 -26.96604 -26.33120 -24.83275 -23.84995 -23.81669 -22.40564 -20.26367 -19.49947 -19.20212 -17.96385 -17.84555 -17.02266 -16.80939 -16.49808 -16.28321 -16.06676 -15.60431 -15.38949 -15.21689 -15.04931 -14.84675 -14.43887 -14.28676 -14.01803 -13.81096 -13.70601 -13.41241 -13.09626 -12.95744 -12.61933 -12.41380 -12.15421 -12.00759 -11.88477 -11.79698 -11.62301 -11.56619 -11.55460 -11.33474 -11.06931 -10.89513 -10.77699 -10.37617 -10.35081 -10.18650 -10.12717 -10.09845 -9.47730 -8.86245 -8.39189 -8.00124 -7.91974 -6.38722 -3.79301 2.23116 2.38497 3.20060 3.28335 3.34099 3.34333 3.46948 3.94764 4.10887 4.16692 4.32205 4.37491 4.51109 4.54941 4.63467 4.67604 4.76212 4.85112 4.91795 4.93775 4.94619 5.03993 5.16069 5.24620 5.26990 5.28798 5.31110 5.33309 5.36750 5.41644 5.47436 5.55783 5.68813 5.79581 5.86279 5.96966 6.04085 6.05966 6.29355 6.47981 6.67460 6.93219 6.95043 7.29818 7.58097 7.71370 7.74760 8.09764 8.64905 9.21178 9.57975 10.09713 10.79100 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002073 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.511785 B =13501.336238 C =14552.456482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.138 4.138 5 C 0.521 3.479 6 O -0.540 6.540 7 N -0.612 5.612 8 C 0.068 3.932 9 C 0.046 3.954 10 O -0.349 6.349 11 C 0.081 3.919 12 H 0.068 0.932 13 C 0.093 3.907 14 H 0.057 0.943 15 C -0.135 4.135 16 N -0.655 5.655 17 C 0.048 3.952 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.075 3.925 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.109 0.891 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.349 0.651 45 H 0.042 0.958 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.083 0.917 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.795 -17.834 -13.796 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.178 4.178 5 C 0.309 3.691 6 O -0.417 6.417 7 N -0.346 5.346 8 C -0.055 4.055 9 C -0.032 4.032 10 O -0.267 6.267 11 C 0.021 3.979 12 H 0.085 0.915 13 C -0.018 4.018 14 H 0.075 0.925 15 C -0.193 4.193 16 N -0.290 5.290 17 C -0.085 4.085 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.048 4.048 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.171 0.829 45 H 0.060 0.940 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.101 0.899 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.031 -18.045 -13.589 27.133 hybrid contribution -0.993 1.077 0.828 1.683 sum -16.025 -16.968 -12.761 26.599 Atomic orbital electron populations 1.22744 0.80432 1.02818 1.00309 1.87790 1.20207 1.27920 1.95593 1.22165 0.91733 0.84305 1.01919 1.21492 0.95577 0.95078 1.05674 1.20419 0.81625 0.91245 0.75771 1.90725 1.60261 1.40853 1.49890 1.48090 1.05363 1.07517 1.73625 1.22592 0.93171 0.88231 1.01548 1.22964 0.96122 0.87560 0.96539 1.88189 1.33004 1.12461 1.92999 1.22686 0.90089 0.88011 0.97071 0.91452 1.21570 0.94356 0.93275 0.92556 0.92498 1.21715 0.99128 1.03206 0.95291 1.60106 1.52278 1.12913 1.03727 1.21773 0.99250 0.90095 0.97360 1.19802 0.85436 0.84814 0.87214 1.90526 1.58764 1.31604 1.65661 1.41864 1.51347 1.06599 1.20343 1.19703 1.32416 0.94352 0.96318 0.87945 1.25258 0.98138 0.94697 0.99907 1.69612 1.47453 0.97536 1.39765 0.85859 0.79378 0.77721 0.81330 1.20404 1.20981 1.19463 1.22492 0.96757 0.84985 1.00527 0.89454 0.93840 0.93913 0.92232 0.92351 0.87930 0.87766 0.88646 0.89597 0.92924 0.87289 0.93172 0.92361 0.90955 0.82892 0.93980 0.89495 0.77482 0.91920 0.89906 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.48 10.70 -35.23 -0.38 -3.85 16 3 C 0.08 0.66 5.23 37.16 0.19 0.85 16 4 C -0.14 -1.05 4.44 -27.88 -0.12 -1.18 16 5 C 0.52 5.62 7.71 -10.98 -0.08 5.54 16 6 O -0.54 -7.77 15.45 5.56 0.09 -7.69 16 7 N -0.61 -6.20 3.02 -172.20 -0.52 -6.72 16 8 C 0.07 0.50 6.54 -3.53 -0.02 0.48 16 9 C 0.05 0.36 6.98 37.31 0.26 0.62 16 10 O -0.35 -4.12 9.62 -35.23 -0.34 -4.46 16 11 C 0.08 0.90 2.51 -26.53 -0.07 0.83 16 12 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 13 C 0.09 1.17 2.47 -67.71 -0.17 1.00 16 14 H 0.06 0.66 7.78 -51.93 -0.40 0.26 16 15 C -0.14 -1.61 9.30 37.16 0.35 -1.27 16 16 N -0.65 -10.77 5.77 -107.99 -0.62 -11.39 16 17 C 0.05 0.86 5.96 -4.97 -0.03 0.83 16 18 C 0.44 10.59 7.82 -10.99 -0.09 10.51 16 19 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 20 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 25 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 C 0.08 0.88 5.83 -3.48 -0.02 0.86 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.23 8.14 -51.92 -0.42 -0.20 16 33 H 0.06 0.56 8.10 -51.93 -0.42 0.13 16 34 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.10 0.60 7.66 -51.93 -0.40 0.20 16 36 H 0.10 0.67 8.01 -51.93 -0.42 0.26 16 37 H 0.10 0.44 6.05 -51.93 -0.31 0.12 16 38 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.71 7.54 -51.93 -0.39 0.32 16 43 H 0.07 0.96 7.73 -51.93 -0.40 0.56 16 44 H 0.35 6.02 5.87 -39.29 -0.23 5.79 16 45 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 46 H 0.09 1.44 7.52 -51.93 -0.39 1.05 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.08 1.09 6.07 -51.93 -0.32 0.78 16 50 H 0.10 1.26 7.08 -51.92 -0.37 0.89 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -34.91 404.62 -6.98 -41.89 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -8.10 Total: 12.12 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 1.07 Total: 12.30 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.48 Total: -56.75 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.54 Total: -31.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.91 -6.98 -41.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282895849.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.652 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds