Wall clock time and date at job start Wed Apr 1 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00560 * 2 1 4 4 H 1.08999 * 109.46757 * 30.00349 * 3 2 1 5 5 C 1.53006 * 109.47255 * 270.00646 * 3 2 1 6 6 C 1.52989 * 109.47402 * 150.00360 * 3 2 1 7 7 C 1.50706 * 109.47283 * 295.00361 * 6 3 2 8 8 O 1.21281 * 119.99548 * 359.97438 * 7 6 3 9 9 N 1.34773 * 120.00168 * 180.02562 * 7 6 3 10 10 C 1.46500 * 119.99972 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47285 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.54203 * 59.88328 * 11 10 9 13 13 C 1.53096 * 109.50621 * 180.02562 * 11 10 9 14 14 N 1.47020 * 109.25535 * 176.77988 * 13 11 10 15 15 C 1.46900 * 110.99785 * 177.60421 * 14 13 11 16 16 C 1.50698 * 109.46777 * 189.99974 * 15 14 13 17 17 O 1.21296 * 120.00659 * 6.28256 * 16 15 14 18 18 N 1.34785 * 119.99810 * 186.27998 * 16 15 14 19 19 C 1.37094 * 119.99826 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00330 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99844 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99790 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46915 * 89.99988 * 23 21 19 25 25 H 1.48498 * 109.46972 * 209.99665 * 23 21 19 26 26 H 1.48492 * 109.47084 * 329.99542 * 23 21 19 27 27 C 1.47010 * 110.75655 * 301.38432 * 14 13 11 28 28 C 1.53102 * 109.25505 * 58.61264 * 27 14 13 29 29 O 1.43011 * 109.26194 * 303.15276 * 28 27 14 30 30 H 1.09002 * 109.47775 * 59.99523 * 1 2 3 31 31 H 1.08999 * 109.47221 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46609 * 299.99465 * 1 2 3 33 33 H 1.09001 * 109.46939 * 300.00107 * 5 3 2 34 34 H 1.09001 * 109.46933 * 59.99263 * 5 3 2 35 35 H 1.09000 * 109.47216 * 179.97438 * 5 3 2 36 36 H 1.09002 * 109.47243 * 175.00094 * 6 3 2 37 37 H 1.09003 * 109.47235 * 55.00327 * 6 3 2 38 38 H 0.97005 * 120.00170 * 359.97438 * 9 7 6 39 39 H 1.09002 * 109.47265 * 59.99296 * 10 9 7 40 40 H 1.09003 * 109.47088 * 299.99605 * 10 9 7 41 41 H 1.08998 * 109.50817 * 56.85151 * 13 11 10 42 42 H 1.09000 * 109.50694 * 296.71306 * 13 11 10 43 43 H 1.09002 * 109.47024 * 309.99858 * 15 14 13 44 44 H 1.08999 * 109.46850 * 70.00087 * 15 14 13 45 45 H 0.96995 * 119.99619 * 0.02562 * 18 16 15 46 46 H 0.97003 * 119.99674 * 180.02562 * 22 21 19 47 47 H 1.08990 * 109.50642 * 178.54891 * 27 14 13 48 48 H 1.09000 * 109.50234 * 298.68504 * 27 14 13 49 49 H 1.08999 * 109.50413 * 63.09539 * 28 27 14 50 50 H 1.09006 * 109.50411 * 183.21575 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3589 1.2631 0.7211 7 6 3.1417 0.9234 2.1732 8 8 2.0187 0.7342 2.5903 9 7 4.1953 0.8308 3.0085 10 6 3.9841 0.5010 4.4202 11 6 5.3328 0.4586 5.1414 12 1 5.8189 1.4311 5.0631 13 6 5.1131 0.1135 6.6167 14 7 6.4164 -0.0018 7.2870 15 6 6.2487 -0.2769 8.7203 16 6 7.5791 -0.1455 9.4159 17 8 8.5459 0.2584 8.8048 18 7 7.6946 -0.4768 10.7173 19 6 8.9047 -0.3568 11.3503 20 1 9.7656 0.0028 10.8062 21 6 9.0240 -0.6988 12.6918 22 7 7.9767 -1.1368 13.3538 23 14 10.6730 -0.5359 13.5542 24 1 10.7902 0.8210 14.1460 25 1 10.7720 -1.5552 14.6295 26 1 11.7676 -0.7441 12.5726 27 6 7.2428 -1.0346 6.6454 28 6 7.4411 -0.6779 5.1698 29 8 6.1636 -0.5394 4.5421 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.8828 1.0774 -1.9565 34 1 1.2568 1.8014 -1.9563 35 1 2.6607 2.7673 -1.4425 36 1 3.8428 2.2368 0.6442 37 1 3.9931 0.5050 0.2615 38 1 5.0935 0.9824 2.6750 39 1 3.5003 -0.4727 4.4975 40 1 3.3499 1.2593 4.8795 41 1 4.5794 -0.8339 6.6933 42 1 4.5279 0.9011 7.0915 43 1 5.5435 0.4363 9.1470 44 1 5.8673 -1.2892 8.8537 45 1 6.9216 -0.8000 11.2059 46 1 8.0599 -1.3752 14.2904 47 1 8.2121 -1.0850 7.1412 48 1 6.7431 -2.0002 6.7225 49 1 7.9883 0.2616 5.0929 50 1 8.0051 -1.4697 4.6766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319298631.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:38 Heat of formation + Delta-G solvation = -159.454884 kcal Electronic energy + Delta-G solvation = -29958.170393 eV Core-core repulsion = 25599.723167 eV Total energy + Delta-G solvation = -4358.447225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.24333 -39.61305 -38.24050 -37.95947 -35.47834 -34.84817 -33.85150 -33.23075 -31.65574 -31.28097 -29.16601 -28.61674 -26.95805 -26.43951 -25.00067 -23.82068 -22.68863 -21.79723 -20.78534 -20.12836 -19.22576 -17.91575 -17.45524 -17.18831 -16.76598 -16.37247 -16.05079 -15.90563 -15.33586 -15.26772 -15.09306 -15.07175 -14.72077 -14.40647 -14.10221 -13.90119 -13.63040 -13.50819 -13.32692 -13.27465 -13.08636 -12.89037 -12.42295 -12.33757 -12.16747 -11.99596 -11.73440 -11.72256 -11.54119 -11.26409 -11.21409 -11.06502 -10.94351 -10.54692 -10.42035 -10.25084 -10.04478 -9.85754 -9.68719 -9.50663 -9.23993 -8.50243 -8.04097 -7.96083 -6.44803 -3.85843 2.50414 2.91175 3.15538 3.24546 3.29880 3.50319 3.60101 3.83421 3.86769 4.19104 4.38797 4.44172 4.71858 4.77696 4.82308 4.93330 4.99256 5.02685 5.06001 5.07515 5.15648 5.18467 5.21237 5.26729 5.29411 5.34317 5.39266 5.51100 5.52580 5.54491 5.57928 5.61318 5.75720 5.75927 5.83757 5.85076 6.08076 6.17641 6.23255 6.25424 6.95002 7.05161 7.10053 7.23752 7.32492 7.52063 8.02622 8.06906 8.58004 9.14639 9.50697 10.02083 10.72804 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.038008 B = 0.001589 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.515202 B =17620.893523 C =18000.454666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.100 3.900 4 H 0.068 0.932 5 C -0.175 4.175 6 C -0.141 4.141 7 C 0.515 3.485 8 O -0.537 6.537 9 N -0.725 5.725 10 C 0.131 3.869 11 C 0.085 3.915 12 H 0.075 0.925 13 C 0.026 3.974 14 N -0.512 5.512 15 C 0.046 3.954 16 C 0.443 3.557 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.016 3.984 28 C 0.069 3.931 29 O -0.384 6.384 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.405 0.595 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.109 0.891 48 H 0.034 0.966 49 H 0.062 0.938 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 4.084 -24.836 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.233 4.233 6 C -0.181 4.181 7 C 0.301 3.699 8 O -0.413 6.413 9 N -0.377 5.377 10 C 0.007 3.993 11 C 0.026 3.974 12 H 0.093 0.907 13 C -0.103 4.103 14 N -0.237 5.237 15 C -0.085 4.085 16 C 0.228 3.772 17 O -0.463 6.463 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.112 4.112 28 C -0.008 4.008 29 O -0.304 6.304 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.239 0.761 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.127 0.873 48 H 0.052 0.948 49 H 0.080 0.920 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.823 4.318 -24.925 27.923 hybrid contribution 0.236 -0.534 1.170 1.308 sum -11.587 3.784 -23.755 26.700 Atomic orbital electron populations 1.22695 0.80999 1.02490 0.99684 1.87891 1.19817 1.26933 1.94942 1.21775 0.93545 0.85904 0.94628 0.91404 1.22308 1.02640 1.01671 0.96682 1.21849 0.99196 1.04526 0.92515 1.20523 0.84666 0.76709 0.87959 1.90694 1.23387 1.49401 1.77866 1.45861 1.10057 1.72135 1.09629 1.21324 0.95241 1.02067 0.80703 1.22317 0.90876 0.92681 0.91525 0.90743 1.22676 0.91896 1.01548 0.94227 1.61777 1.12973 1.47157 1.01769 1.21882 0.98119 1.00435 0.88060 1.19694 0.89563 0.84800 0.83154 1.90496 1.39541 1.50753 1.65474 1.41876 1.12137 1.57505 1.08435 1.19698 0.88721 1.41404 0.93155 0.87885 1.25269 0.99060 0.96941 0.96622 1.69614 1.29613 1.44313 1.10660 0.85851 0.81597 0.77962 0.78836 1.20383 1.20931 1.19429 1.22901 1.00809 0.92064 0.95389 1.22676 0.84318 1.01911 0.91879 1.87941 1.27720 1.58193 1.56497 0.94675 0.90009 0.93559 0.91601 0.92184 0.91450 0.87627 0.87888 0.76101 0.90735 0.89929 0.93843 0.89476 0.89089 0.93343 0.77481 0.91838 0.87275 0.94799 0.91955 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.82 101.05 1.09 1.41 16 2 O -0.38 -3.97 9.58 -49.64 -0.48 -4.45 16 3 C 0.10 0.80 2.27 -26.73 -0.06 0.74 16 4 H 0.07 0.58 7.60 -51.93 -0.39 0.18 16 5 C -0.18 -0.97 9.53 37.16 0.35 -0.62 16 6 C -0.14 -0.99 5.41 -27.89 -0.15 -1.14 16 7 C 0.52 5.37 7.71 -10.98 -0.08 5.29 16 8 O -0.54 -7.60 15.42 -8.85 -0.14 -7.73 16 9 N -0.72 -6.70 5.45 -60.29 -0.33 -7.03 16 10 C 0.13 1.35 5.37 -4.04 -0.02 1.33 16 11 C 0.08 0.95 2.89 -26.68 -0.08 0.87 16 12 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 13 C 0.03 0.32 4.93 -3.71 -0.02 0.31 16 14 N -0.51 -8.29 4.42 -235.75 -1.04 -9.33 16 15 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 16 C 0.44 10.20 7.35 -10.98 -0.08 10.12 16 17 O -0.58 -15.14 14.25 5.54 0.08 -15.06 16 18 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 23 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.02 0.26 5.30 -3.71 -0.02 0.24 16 28 C 0.07 0.89 7.01 37.21 0.26 1.15 16 29 O -0.38 -4.79 10.22 -35.23 -0.36 -5.15 16 30 H 0.03 0.23 7.87 -51.93 -0.41 -0.18 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.40 2.98 8.36 -40.82 -0.34 2.64 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 43 H 0.09 1.43 8.04 -51.93 -0.42 1.02 16 44 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 45 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 47 H 0.11 2.05 6.10 -51.93 -0.32 1.74 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 408.97 15.07 6.16 6.16 Total: -1.00 -33.86 408.97 -7.99 -41.85 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.45 Total: 10.00 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 0.93 Total: 12.58 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.70 Total: -53.99 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.89 Total: -32.38 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.86 -7.99 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319298631.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.604 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds