Wall clock time and date at job start Wed Apr 1 2020 02:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00560 * 2 1 4 4 H 1.08999 * 109.46757 * 30.00349 * 3 2 1 5 5 C 1.53006 * 109.47255 * 270.00646 * 3 2 1 6 6 C 1.52989 * 109.47402 * 150.00360 * 3 2 1 7 7 C 1.50706 * 109.47283 * 295.00361 * 6 3 2 8 8 O 1.21281 * 119.99548 * 359.97438 * 7 6 3 9 9 N 1.34773 * 120.00168 * 180.02562 * 7 6 3 10 10 C 1.46500 * 119.99972 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47285 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.54203 * 59.88328 * 11 10 9 13 13 C 1.53096 * 109.50621 * 180.02562 * 11 10 9 14 14 N 1.47020 * 109.25535 * 176.77988 * 13 11 10 15 15 C 1.46900 * 110.99785 * 177.60421 * 14 13 11 16 16 C 1.50698 * 109.46777 * 189.99974 * 15 14 13 17 17 O 1.21296 * 120.00659 * 6.28256 * 16 15 14 18 18 N 1.34785 * 119.99810 * 186.27998 * 16 15 14 19 19 C 1.37094 * 119.99826 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00330 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99844 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99790 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46915 * 89.99988 * 23 21 19 25 25 H 1.48498 * 109.46972 * 209.99665 * 23 21 19 26 26 H 1.48492 * 109.47084 * 329.99542 * 23 21 19 27 27 C 1.47010 * 110.75655 * 301.38432 * 14 13 11 28 28 C 1.53102 * 109.25505 * 58.61264 * 27 14 13 29 29 O 1.43011 * 109.26194 * 303.15276 * 28 27 14 30 30 H 1.09002 * 109.47775 * 59.99523 * 1 2 3 31 31 H 1.08999 * 109.47221 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46609 * 299.99465 * 1 2 3 33 33 H 1.09001 * 109.46939 * 300.00107 * 5 3 2 34 34 H 1.09001 * 109.46933 * 59.99263 * 5 3 2 35 35 H 1.09000 * 109.47216 * 179.97438 * 5 3 2 36 36 H 1.09002 * 109.47243 * 175.00094 * 6 3 2 37 37 H 1.09003 * 109.47235 * 55.00327 * 6 3 2 38 38 H 0.97005 * 120.00170 * 359.97438 * 9 7 6 39 39 H 1.09002 * 109.47265 * 59.99296 * 10 9 7 40 40 H 1.09003 * 109.47088 * 299.99605 * 10 9 7 41 41 H 1.08998 * 109.50817 * 56.85151 * 13 11 10 42 42 H 1.09000 * 109.50694 * 296.71306 * 13 11 10 43 43 H 1.09002 * 109.47024 * 309.99858 * 15 14 13 44 44 H 1.08999 * 109.46850 * 70.00087 * 15 14 13 45 45 H 0.96995 * 119.99619 * 0.02562 * 18 16 15 46 46 H 0.97003 * 119.99674 * 180.02562 * 22 21 19 47 47 H 1.08990 * 109.50642 * 178.54891 * 27 14 13 48 48 H 1.09000 * 109.50234 * 298.68504 * 27 14 13 49 49 H 1.08999 * 109.50413 * 63.09539 * 28 27 14 50 50 H 1.09006 * 109.50411 * 183.21575 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3589 1.2631 0.7211 7 6 3.1417 0.9234 2.1732 8 8 2.0187 0.7342 2.5903 9 7 4.1953 0.8308 3.0085 10 6 3.9841 0.5010 4.4202 11 6 5.3328 0.4586 5.1414 12 1 5.8189 1.4311 5.0631 13 6 5.1131 0.1135 6.6167 14 7 6.4164 -0.0018 7.2870 15 6 6.2487 -0.2769 8.7203 16 6 7.5791 -0.1455 9.4159 17 8 8.5459 0.2584 8.8048 18 7 7.6946 -0.4768 10.7173 19 6 8.9047 -0.3568 11.3503 20 1 9.7656 0.0028 10.8062 21 6 9.0240 -0.6988 12.6918 22 7 7.9767 -1.1368 13.3538 23 14 10.6730 -0.5359 13.5542 24 1 10.7902 0.8210 14.1460 25 1 10.7720 -1.5552 14.6295 26 1 11.7676 -0.7441 12.5726 27 6 7.2428 -1.0346 6.6454 28 6 7.4411 -0.6779 5.1698 29 8 6.1636 -0.5394 4.5421 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.8828 1.0774 -1.9565 34 1 1.2568 1.8014 -1.9563 35 1 2.6607 2.7673 -1.4425 36 1 3.8428 2.2368 0.6442 37 1 3.9931 0.5050 0.2615 38 1 5.0935 0.9824 2.6750 39 1 3.5003 -0.4727 4.4975 40 1 3.3499 1.2593 4.8795 41 1 4.5794 -0.8339 6.6933 42 1 4.5279 0.9011 7.0915 43 1 5.5435 0.4363 9.1470 44 1 5.8673 -1.2892 8.8537 45 1 6.9216 -0.8000 11.2059 46 1 8.0599 -1.3752 14.2904 47 1 8.2121 -1.0850 7.1412 48 1 6.7431 -2.0002 6.7225 49 1 7.9883 0.2616 5.0929 50 1 8.0051 -1.4697 4.6766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319298631.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:37 Heat of formation + Delta-G solvation = -186.572813 kcal Electronic energy + Delta-G solvation = -29959.346314 eV Core-core repulsion = 25599.723167 eV Total energy + Delta-G solvation = -4359.623147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.19426 -40.66524 -39.76708 -38.78546 -36.76293 -35.84179 -35.71732 -33.85225 -33.28281 -32.58439 -30.43125 -29.36389 -27.86732 -27.38299 -26.50288 -25.15897 -23.71690 -22.48286 -21.72416 -21.02988 -21.00522 -19.88403 -18.24721 -17.97870 -17.82868 -17.47911 -17.15583 -17.08377 -16.57874 -16.45550 -16.09118 -15.97669 -15.85087 -15.81132 -15.48176 -15.11563 -15.04364 -14.69692 -14.41533 -14.03198 -13.91176 -13.69281 -13.49288 -13.40041 -13.25616 -13.05278 -12.90116 -12.85215 -12.79255 -12.42052 -12.36115 -12.29172 -12.23318 -12.12520 -11.63674 -11.61676 -11.44391 -10.90431 -10.76767 -10.49826 -10.25121 -10.06030 -10.00662 -9.34805 -8.46874 -5.95601 1.37882 1.41903 1.54347 1.73114 2.03944 2.12256 2.29262 2.63734 2.69009 2.92465 3.19959 3.33106 3.74482 3.80187 3.85814 3.94686 3.98598 4.08757 4.15890 4.24212 4.30378 4.39128 4.42929 4.47708 4.49351 4.49920 4.57365 4.60342 4.61640 4.64923 4.66240 4.76116 4.84352 4.87680 4.92220 4.93858 5.01426 5.07602 5.34281 5.40628 5.44405 5.76155 5.94792 6.04624 6.13973 6.33895 6.59675 6.60650 7.12410 7.31990 7.55661 8.10873 8.70458 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.038008 B = 0.001589 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.515202 B =17620.893523 C =18000.454666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.404 6.404 3 C 0.092 3.908 4 H 0.057 0.943 5 C -0.168 4.168 6 C -0.135 4.135 7 C 0.510 3.490 8 O -0.580 6.580 9 N -0.717 5.717 10 C 0.138 3.862 11 C 0.092 3.908 12 H 0.081 0.919 13 C 0.025 3.975 14 N -0.528 5.528 15 C 0.057 3.943 16 C 0.442 3.558 17 O -0.612 6.612 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.272 1.272 27 C 0.017 3.983 28 C 0.078 3.922 29 O -0.385 6.385 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.114 0.886 38 H 0.415 0.585 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.064 0.936 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.073 0.927 48 H 0.036 0.964 49 H 0.059 0.941 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.053 4.735 -26.092 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.323 6.323 3 C 0.034 3.966 4 H 0.075 0.925 5 C -0.226 4.226 6 C -0.175 4.175 7 C 0.298 3.702 8 O -0.460 6.460 9 N -0.370 5.370 10 C 0.013 3.987 11 C 0.033 3.967 12 H 0.099 0.901 13 C -0.103 4.103 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.229 3.771 17 O -0.498 6.498 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.111 4.111 28 C 0.001 3.999 29 O -0.304 6.304 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.157 0.843 37 H 0.132 0.868 38 H 0.252 0.748 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.123 0.877 43 H 0.132 0.868 44 H 0.082 0.918 45 H 0.229 0.771 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.078 0.922 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.931 4.973 -26.199 29.214 hybrid contribution 0.236 -0.726 1.518 1.699 sum -11.694 4.247 -24.681 27.640 Atomic orbital electron populations 1.22744 0.80410 1.02905 0.99912 1.87843 1.20701 1.28641 1.95162 1.21978 0.93646 0.84789 0.96188 0.92504 1.22252 1.02877 1.02651 0.94782 1.21938 0.99148 1.06646 0.89750 1.21166 0.84049 0.75742 0.89284 1.90678 1.25063 1.51395 1.78825 1.45822 1.10561 1.71454 1.09130 1.21182 0.94497 1.01560 0.81430 1.22307 0.91103 0.92590 0.90672 0.90122 1.22790 0.90207 1.02437 0.94870 1.61749 1.15029 1.47355 1.01130 1.21760 0.94792 1.02058 0.88782 1.20669 0.91241 0.82692 0.82470 1.90470 1.41524 1.51757 1.66092 1.41944 1.11587 1.58358 1.09253 1.19669 0.89284 1.43224 0.94035 0.90152 1.26036 1.02459 0.96075 0.96682 1.69677 1.31087 1.44334 1.11081 0.84924 0.77362 0.78341 0.77694 1.19668 1.19688 1.19699 1.22831 0.99015 0.92363 0.96934 1.22618 0.84712 1.02474 0.90099 1.87950 1.27551 1.58604 1.56324 0.92800 0.89602 0.94918 0.91460 0.92210 0.89480 0.84266 0.86758 0.74802 0.92226 0.89248 0.93500 0.87716 0.86793 0.91803 0.77105 0.91346 0.90854 0.94607 0.92236 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.82 113.37 1.23 1.83 16 2 O -0.40 -8.30 9.58 -135.20 -1.30 -9.59 16 3 C 0.09 1.35 2.27 30.59 0.07 1.42 16 4 H 0.06 0.94 7.60 -2.39 -0.02 0.92 16 5 C -0.17 -1.50 9.53 71.98 0.69 -0.81 16 6 C -0.14 -1.60 5.41 29.85 0.16 -1.44 16 7 C 0.51 9.96 7.71 87.66 0.68 10.63 16 8 O -0.58 -16.30 15.42 10.75 0.17 -16.13 16 9 N -0.72 -11.94 5.45 -463.05 -2.52 -14.46 16 10 C 0.14 2.62 5.37 86.38 0.46 3.09 16 11 C 0.09 1.87 2.89 30.63 0.09 1.96 16 12 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 13 C 0.03 0.59 4.93 86.31 0.43 1.01 16 14 N -0.53 -16.51 4.42 -899.79 -3.98 -20.49 16 15 C 0.06 1.95 5.45 85.56 0.47 2.42 16 16 C 0.44 20.65 7.35 87.66 0.64 21.30 16 17 O -0.61 -32.90 14.25 -3.08 -0.04 -32.94 16 18 N -0.57 -29.15 5.29 -306.97 -1.62 -30.77 16 19 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -49.47 13.05 21.66 0.28 -49.18 16 23 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 C 0.02 0.52 5.30 86.32 0.46 0.98 16 28 C 0.08 1.90 7.01 72.02 0.50 2.40 16 29 O -0.39 -8.84 10.22 -148.98 -1.52 -10.36 16 30 H 0.05 0.65 7.87 -2.39 -0.02 0.63 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.03 0.61 8.09 -2.39 -0.02 0.59 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.54 7.87 -2.39 -0.02 0.52 16 35 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.42 5.08 8.36 -92.70 -0.77 4.31 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.10 2.08 8.09 -2.39 -0.02 2.06 16 43 H 0.11 3.38 8.04 -2.39 -0.02 3.36 16 44 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 45 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 46 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 47 H 0.07 2.83 6.10 -2.39 -0.01 2.82 16 48 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -74.62 408.97 -1.92 -76.54 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -0.56 Total: 36.08 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 7.15 Total: 26.71 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -7.84 Total: -114.91 kcal Atomic # 8 Polarization: -66.33 SS G_CDS: -2.70 Total: -69.03 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -74.62 -1.92 -76.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319298631.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.035 kcal (2) G-P(sol) polarization free energy of solvation -74.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds