Wall clock time and date at job start Wed Apr 1 2020 02:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99894 * 2 1 4 4 C 1.52998 * 109.47216 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47101 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46913 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00543 * 359.97438 * 6 5 4 8 8 N 1.34784 * 120.00193 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00198 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47059 * 184.98597 * 9 8 6 11 11 H 1.09002 * 109.50632 * 185.85106 * 10 9 8 12 12 C 1.53095 * 109.50964 * 65.71301 * 10 9 8 13 13 O 1.43010 * 109.26203 * 183.21453 * 12 10 9 14 14 C 1.43020 * 113.73498 * 58.67292 * 13 12 10 15 15 C 1.53097 * 109.26054 * 301.33062 * 14 13 12 16 16 N 1.47009 * 109.25785 * 56.84535 * 15 14 13 17 17 C 1.46903 * 111.00095 * 177.60920 * 16 15 14 18 18 C 1.50703 * 109.47022 * 287.57155 * 17 16 15 19 19 O 1.21295 * 119.99759 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99931 * 179.72595 * 18 17 16 21 21 C 1.37093 * 120.00006 * 180.27520 * 20 18 17 22 22 H 1.08006 * 120.00278 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00022 * 179.97438 * 21 20 18 24 24 N 1.31406 * 119.99947 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00114 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47068 * 90.00134 * 25 23 21 27 27 H 1.48496 * 109.47223 * 210.00612 * 25 23 21 28 28 H 1.48505 * 109.47059 * 330.00118 * 25 23 21 29 29 H 1.08998 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47176 * 299.99845 * 1 2 3 31 31 H 1.09002 * 109.47370 * 60.00444 * 1 2 3 32 32 H 1.08996 * 109.47564 * 59.99795 * 3 2 1 33 33 H 1.09002 * 109.47183 * 299.99879 * 3 2 1 34 34 H 1.09004 * 109.47494 * 59.99714 * 4 3 2 35 35 H 1.09002 * 109.47047 * 300.00086 * 4 3 2 36 36 H 1.09002 * 109.47393 * 60.00483 * 5 4 3 37 37 H 1.09000 * 109.47191 * 299.99541 * 5 4 3 38 38 H 0.97002 * 119.99440 * 359.97438 * 8 6 5 39 39 H 1.08999 * 109.47110 * 64.98726 * 9 8 6 40 40 H 1.08998 * 109.47060 * 304.98087 * 9 8 6 41 41 H 1.08994 * 109.51027 * 303.15527 * 12 10 9 42 42 H 1.09009 * 109.50435 * 63.24209 * 12 10 9 43 43 H 1.09000 * 109.50678 * 61.26986 * 14 13 12 44 44 H 1.09003 * 109.50851 * 181.34895 * 14 13 12 45 45 H 1.09008 * 109.50504 * 296.91489 * 15 14 13 46 46 H 1.09001 * 109.50953 * 176.78511 * 15 14 13 47 47 H 1.09000 * 109.47020 * 167.57501 * 17 16 15 48 48 H 1.08994 * 109.47002 * 47.57216 * 17 16 15 49 49 H 0.97003 * 119.99510 * 0.27149 * 20 18 17 50 50 H 0.97004 * 120.00266 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5824 0.0000 6 6 5.6600 2.4634 0.0000 7 8 6.1816 1.3685 0.0009 8 7 6.4240 3.5738 0.0000 9 6 7.8844 3.4581 0.0006 10 6 8.5062 4.8504 0.1258 11 1 9.5887 4.7762 0.0221 12 6 8.1622 5.4427 1.4950 13 8 8.6818 6.7725 1.5778 14 6 8.1809 7.6504 0.5660 15 6 8.5250 7.0805 -0.8127 16 7 7.9708 5.7238 -0.9287 17 6 8.2305 5.1611 -2.2606 18 6 7.3514 5.8458 -3.2753 19 8 6.5838 6.7166 -2.9234 20 7 7.4219 5.4942 -4.5744 21 6 6.6263 6.1209 -5.4984 22 1 5.9433 6.8969 -5.1852 23 6 6.6993 5.7587 -6.8378 24 7 7.5306 4.8151 -7.2189 25 14 5.6157 6.6133 -8.0969 26 1 6.3256 7.8009 -8.6361 27 1 5.3097 5.6739 -9.2054 28 1 4.3505 7.0443 -7.4498 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6435 -0.8891 35 1 3.8567 0.6439 0.8909 36 1 3.8358 3.1239 0.8896 37 1 3.8364 3.1227 -0.8905 38 1 6.0068 4.4495 -0.0004 39 1 8.2126 2.9961 -0.9305 40 1 8.1997 2.8423 0.8428 41 1 7.0796 5.4666 1.6197 42 1 8.6055 4.8286 2.2790 43 1 7.0988 7.7385 0.6637 44 1 8.6376 8.6337 0.6785 45 1 9.6080 7.0426 -0.9308 46 1 8.0958 7.7165 -1.5869 47 1 8.0124 4.0932 -2.2527 48 1 9.2770 5.3163 -2.5228 49 1 8.0356 4.7976 -4.8557 50 1 7.5818 4.5625 -8.1541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326611985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:22 Heat of formation + Delta-G solvation = -158.808221 kcal Electronic energy + Delta-G solvation = -31090.812859 eV Core-core repulsion = 26732.393675 eV Total energy + Delta-G solvation = -4358.419184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.31512 -39.31630 -38.06881 -38.02496 -36.00690 -34.46298 -33.76455 -33.69987 -31.43000 -31.28789 -29.12332 -28.27083 -26.72134 -25.67740 -25.40305 -23.83873 -22.70917 -21.96067 -20.40404 -19.88468 -19.22259 -17.92934 -17.36669 -16.81006 -16.48177 -16.46031 -16.29962 -15.89112 -15.62182 -15.38822 -15.12297 -14.96049 -14.75978 -14.53461 -14.16083 -13.99068 -13.80962 -13.65019 -13.36256 -13.30428 -12.88789 -12.33387 -12.24040 -12.15043 -12.00125 -11.89941 -11.66512 -11.56851 -11.38251 -11.18916 -11.18144 -11.02007 -10.89358 -10.53271 -10.43527 -10.26646 -9.86597 -9.82410 -9.72941 -9.53352 -8.94490 -8.59225 -8.08753 -7.99845 -6.45938 -3.87246 2.72126 3.11062 3.13908 3.23258 3.28123 3.60858 3.74535 3.82769 3.85037 4.16692 4.60798 4.63854 4.73079 4.81522 4.93678 4.94020 5.01302 5.09174 5.12811 5.16961 5.18859 5.23997 5.26806 5.28614 5.34275 5.37129 5.42177 5.48595 5.55498 5.57982 5.63659 5.73264 5.74002 5.88965 6.00350 6.01081 6.09645 6.14868 6.20068 6.48470 6.95859 7.01079 7.01587 7.15369 7.50406 7.61456 8.00682 8.30925 8.56011 9.13056 9.49216 10.00061 10.71618 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.005916 B = 0.003680 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4732.182240 B = 7606.797867 C =11293.355729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.060 3.940 4 C -0.102 4.102 5 C -0.139 4.139 6 C 0.514 3.486 7 O -0.547 6.547 8 N -0.716 5.716 9 C 0.127 3.873 10 C 0.031 3.969 11 H 0.064 0.936 12 C 0.073 3.927 13 O -0.388 6.388 14 C 0.065 3.935 15 C 0.022 3.978 16 N -0.507 5.507 17 C 0.039 3.961 18 C 0.445 3.555 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.270 1.270 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.412 0.588 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.035 0.965 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.050 0.950 49 H 0.391 0.609 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 -2.842 16.616 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.017 4.017 4 C -0.140 4.140 5 C -0.179 4.179 6 C 0.301 3.699 7 O -0.425 6.425 8 N -0.370 5.370 9 C 0.003 3.997 10 C -0.078 4.078 11 H 0.082 0.918 12 C -0.004 4.004 13 O -0.306 6.306 14 C -0.012 4.012 15 C -0.106 4.106 16 N -0.233 5.233 17 C -0.092 4.092 18 C 0.230 3.770 19 O -0.464 6.464 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.249 0.751 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.125 0.875 47 H 0.110 0.890 48 H 0.068 0.932 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.389 -3.182 16.858 17.708 hybrid contribution 0.249 0.489 -1.436 1.537 sum -4.141 -2.693 15.422 16.194 Atomic orbital electron populations 1.22736 0.81102 1.02694 0.99976 1.87882 1.19623 1.28130 1.95424 1.22571 0.94171 0.84613 1.00298 1.21198 0.92050 0.95905 1.04862 1.21535 0.92160 0.99292 1.04919 1.20550 0.89498 0.84130 0.75724 1.90701 1.75197 1.26723 1.49901 1.45901 1.06444 1.09683 1.74942 1.21330 0.80606 0.95186 1.02617 1.22657 0.98327 0.92962 0.93869 0.91798 1.22626 0.99151 0.83613 0.95006 1.87960 1.69463 1.20679 1.52511 1.22700 0.99512 0.92896 0.86064 1.22859 0.97379 0.90961 0.99401 1.61775 1.58241 1.01693 1.01558 1.21995 0.98318 1.00130 0.88788 1.19635 0.87274 0.87010 0.83059 1.90491 1.41953 1.34386 1.79542 1.41869 1.37306 1.35389 1.05348 1.19667 1.18260 1.18082 0.86929 0.87923 1.25266 0.97712 0.96786 0.98113 1.69608 1.36760 1.29732 1.17995 0.85869 0.80077 0.78704 0.79704 1.20422 1.20898 1.19418 0.89701 0.94172 0.93980 0.93311 0.92985 0.90202 0.90468 0.88832 0.88239 0.75128 0.91050 0.90576 0.92269 0.88561 0.91973 0.88606 0.94647 0.87481 0.88956 0.93157 0.77546 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.54 10.70 -35.23 -0.38 -4.92 16 3 C 0.06 0.60 5.94 37.16 0.22 0.82 16 4 C -0.10 -1.16 4.87 -26.73 -0.13 -1.29 16 5 C -0.14 -1.44 5.70 -27.88 -0.16 -1.60 16 6 C 0.51 6.86 7.83 -10.98 -0.09 6.77 16 7 O -0.55 -9.21 15.98 5.55 0.09 -9.12 16 8 N -0.72 -8.71 5.05 -60.30 -0.30 -9.02 16 9 C 0.13 1.50 4.72 -4.04 -0.02 1.48 16 10 C 0.03 0.36 2.25 -67.60 -0.15 0.21 16 11 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 12 C 0.07 0.78 6.21 37.21 0.23 1.01 16 13 O -0.39 -4.83 10.83 -35.23 -0.38 -5.21 16 14 C 0.07 0.79 7.01 37.21 0.26 1.05 16 15 C 0.02 0.31 5.31 -3.71 -0.02 0.29 16 16 N -0.51 -7.33 3.49 -227.77 -0.79 -8.12 16 17 C 0.04 0.64 5.30 -4.97 -0.03 0.62 16 18 C 0.45 9.83 7.51 -10.98 -0.08 9.75 16 19 O -0.58 -14.35 14.44 5.54 0.08 -14.27 16 20 N -0.56 -13.77 5.29 -10.96 -0.06 -13.82 16 21 C -0.30 -8.10 9.68 -14.94 -0.14 -8.24 16 22 H 0.10 2.90 7.16 -52.48 -0.38 2.52 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 25 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.41 4.92 7.43 -40.82 -0.30 4.62 16 39 H 0.07 0.94 6.38 -51.93 -0.33 0.61 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.61 7.28 -51.93 -0.38 0.23 16 42 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 46 H 0.11 1.84 6.44 -51.93 -0.33 1.50 16 47 H 0.09 1.47 5.65 -51.93 -0.29 1.18 16 48 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 49 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 405.15 15.07 6.11 6.11 Total: -1.00 -32.53 405.15 -7.26 -39.79 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -8.23 Total: 13.69 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 0.91 Total: 12.75 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.43 Total: -54.44 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.59 Total: -33.52 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.53 -7.26 -39.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326611985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.021 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds