Wall clock time and date at job start Wed Apr 1 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00080 * 2 1 4 4 C 1.52994 * 109.47403 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47099 * 55.00011 * 4 3 2 6 6 C 1.53006 * 109.47446 * 294.99890 * 4 3 2 7 7 C 1.50707 * 109.47253 * 174.99981 * 4 3 2 8 8 O 1.21286 * 119.99645 * 0.02562 * 7 4 3 9 9 N 1.34777 * 120.00070 * 180.02562 * 7 4 3 10 10 C 1.46501 * 119.99867 * 180.02562 * 9 7 4 11 11 C 1.52995 * 109.46996 * 184.98397 * 10 9 7 12 12 H 1.09001 * 109.50391 * 185.84621 * 11 10 9 13 13 C 1.53097 * 109.50745 * 65.71439 * 11 10 9 14 14 O 1.43011 * 109.25920 * 183.21342 * 13 11 10 15 15 C 1.43013 * 113.73670 * 58.67565 * 14 13 11 16 16 C 1.53100 * 109.25814 * 301.32635 * 15 14 13 17 17 N 1.47012 * 109.25608 * 56.85044 * 16 15 14 18 18 C 1.46902 * 110.99969 * 177.60984 * 17 16 15 19 19 C 1.50700 * 109.46830 * 287.56728 * 18 17 16 20 20 O 1.21295 * 120.00354 * 0.02562 * 19 18 17 21 21 N 1.34785 * 119.99820 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99768 * 179.72792 * 21 19 18 23 23 H 1.07998 * 120.00392 * 0.27395 * 22 21 19 24 24 C 1.38945 * 119.99846 * 180.27648 * 22 21 19 25 25 N 1.31417 * 120.00277 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00148 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47278 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47302 * 119.99890 * 26 24 22 29 29 H 1.48504 * 109.47631 * 240.00075 * 26 24 22 30 30 H 1.08999 * 109.47363 * 60.00056 * 1 2 3 31 31 H 1.09007 * 109.46992 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47135 * 299.99742 * 1 2 3 33 33 H 1.09002 * 109.47135 * 59.99756 * 3 2 1 34 34 H 1.08998 * 109.47014 * 300.00455 * 3 2 1 35 35 H 1.08998 * 109.47070 * 300.00139 * 6 4 3 36 36 H 1.09007 * 109.46633 * 59.99758 * 6 4 3 37 37 H 1.08998 * 109.47248 * 180.02562 * 6 4 3 38 38 H 0.96999 * 119.99765 * 0.02562 * 9 7 4 39 39 H 1.09000 * 109.46962 * 64.98706 * 10 9 7 40 40 H 1.08996 * 109.47253 * 304.98815 * 10 9 7 41 41 H 1.08997 * 109.50846 * 303.15088 * 13 11 10 42 42 H 1.09007 * 109.50287 * 63.28310 * 13 11 10 43 43 H 1.08994 * 109.51154 * 61.26118 * 15 14 13 44 44 H 1.09002 * 109.51101 * 181.35031 * 15 14 13 45 45 H 1.09009 * 109.50687 * 296.91499 * 16 15 14 46 46 H 1.08999 * 109.50760 * 176.78372 * 16 15 14 47 47 H 1.09001 * 109.47499 * 167.56995 * 18 17 16 48 48 H 1.08997 * 109.47390 * 47.56535 * 18 17 16 49 49 H 0.96993 * 120.00064 * 359.97438 * 21 19 18 50 50 H 0.96999 * 120.00109 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5683 -0.8409 6 6 3.9952 0.5370 1.3083 7 6 4.1480 2.5561 -0.1232 8 8 3.4347 3.5338 -0.2035 9 7 5.4883 2.6960 -0.1447 10 6 6.0837 4.0292 -0.2645 11 6 7.6030 3.8997 -0.3896 12 1 8.0553 4.8914 -0.3743 13 6 7.9497 3.1989 -1.7059 14 8 9.3657 3.0135 -1.7828 15 6 9.9050 2.2441 -0.7047 16 6 9.5782 2.9352 0.6218 17 7 8.1223 3.1060 0.7337 18 6 7.7611 3.7157 2.0205 19 6 7.9502 2.7077 3.1246 20 8 8.3473 1.5913 2.8652 21 7 7.6791 3.0470 4.4006 22 6 7.8459 2.1282 5.4044 23 1 8.1987 1.1340 5.1733 24 6 7.5609 2.4762 6.7190 25 7 7.1320 3.6862 7.0003 26 14 7.7874 1.2242 8.0867 27 1 8.2776 -0.0540 7.5115 28 1 8.7772 1.7366 9.0679 29 1 6.4880 0.9949 8.7681 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.6792 1.1534 2.1499 36 1 3.5521 -0.4549 1.3979 37 1 5.0818 0.4514 1.3090 38 1 6.0586 1.9140 -0.0808 39 1 5.8408 4.6165 0.6211 40 1 5.6872 4.5260 -1.1499 41 1 7.4531 2.2294 -1.7438 42 1 7.6169 3.8122 -2.5433 43 1 9.4653 1.2469 -0.7135 44 1 10.9863 2.1661 -0.8183 45 1 10.0626 3.9113 0.6528 46 1 9.9375 2.3234 1.4492 47 1 6.7185 4.0326 1.9925 48 1 8.3988 4.5803 2.2046 49 1 7.3627 3.9401 4.6081 50 1 6.9334 3.9292 7.9181 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326618290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:28 Heat of formation + Delta-G solvation = -155.228727 kcal Electronic energy + Delta-G solvation = -31914.319463 eV Core-core repulsion = 27556.055498 eV Total energy + Delta-G solvation = -4358.263965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.40830 -39.51202 -38.03236 -37.86582 -35.98851 -34.47248 -33.85274 -33.60594 -31.31343 -31.23391 -29.07952 -27.51855 -26.70667 -25.77801 -25.57077 -23.84015 -23.28107 -22.28198 -20.15809 -19.83157 -19.21925 -17.92169 -17.53213 -16.82152 -16.48884 -16.13530 -15.97810 -15.87165 -15.78371 -15.22455 -15.07608 -14.76306 -14.64230 -14.55430 -14.14090 -13.84552 -13.80911 -13.51329 -13.35957 -13.24505 -12.82548 -12.48664 -12.30067 -12.14158 -12.02234 -11.74047 -11.61392 -11.56088 -11.39473 -11.33414 -11.18785 -10.91753 -10.87421 -10.52874 -10.37577 -10.26293 -9.79387 -9.76957 -9.70678 -9.53247 -8.97518 -8.58636 -8.08251 -7.98763 -6.45196 -3.86303 2.65828 3.00584 3.13452 3.24605 3.30868 3.64518 3.79977 3.85248 3.91080 4.17734 4.60156 4.62705 4.66635 4.85827 4.93900 4.97805 5.01363 5.17006 5.17311 5.19511 5.19678 5.28581 5.31614 5.37576 5.46975 5.49358 5.54656 5.56308 5.63695 5.64997 5.73351 5.74156 5.87134 5.92726 5.99232 6.01602 6.10188 6.20592 6.35593 6.44874 6.99804 7.01320 7.01678 7.15553 7.51705 7.57162 8.01954 8.24528 8.56872 9.14212 9.50160 10.00919 10.72452 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.006705 B = 0.004133 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4174.704812 B = 6773.684079 C = 9938.714594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.081 3.919 4 C -0.107 4.107 5 H 0.103 0.897 6 C -0.142 4.142 7 C 0.522 3.478 8 O -0.551 6.551 9 N -0.711 5.711 10 C 0.127 3.873 11 C 0.031 3.969 12 H 0.065 0.935 13 C 0.073 3.927 14 O -0.387 6.387 15 C 0.065 3.935 16 C 0.022 3.978 17 N -0.507 5.507 18 C 0.038 3.962 19 C 0.446 3.554 20 O -0.578 6.578 21 N -0.563 5.563 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.023 3.977 25 N -0.900 5.900 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.413 0.587 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.035 0.965 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.050 0.950 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 -0.993 -16.150 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C 0.004 3.996 4 C -0.129 4.129 5 H 0.121 0.879 6 C -0.199 4.199 7 C 0.309 3.691 8 O -0.429 6.429 9 N -0.364 5.364 10 C 0.002 3.998 11 C -0.078 4.078 12 H 0.083 0.917 13 C -0.004 4.004 14 O -0.306 6.306 15 C -0.012 4.012 16 C -0.106 4.106 17 N -0.232 5.232 18 C -0.093 4.093 19 C 0.231 3.769 20 O -0.462 6.462 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.125 0.875 47 H 0.110 0.890 48 H 0.068 0.932 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.049 -1.516 -16.361 17.189 hybrid contribution 0.150 0.743 1.372 1.567 sum -4.899 -0.774 -14.989 15.788 Atomic orbital electron populations 1.22716 0.80905 1.02592 1.00073 1.87811 1.19726 1.27978 1.95516 1.22223 0.91730 0.84106 1.01526 1.21152 0.95031 0.94555 1.02125 0.87867 1.21741 1.02192 1.01433 0.94570 1.20377 0.82368 0.90772 0.75620 1.90688 1.61182 1.40773 1.50298 1.45840 1.06415 1.10164 1.74010 1.21354 0.90754 0.85151 1.02494 1.22658 0.94664 0.97232 0.93271 0.91741 1.22632 0.82107 1.00135 0.95558 1.87959 1.21284 1.74130 1.47218 1.22703 0.98909 0.94554 0.85033 1.22861 0.87389 1.00355 0.99976 1.61779 1.12931 1.48102 1.00428 1.22002 1.01914 0.96003 0.89355 1.19624 0.84977 0.89040 0.83273 1.90497 1.50878 1.22109 1.82717 1.41874 1.58344 1.14775 1.04986 1.19720 1.41790 0.95787 0.85471 0.87845 1.25258 0.97035 0.97003 0.98580 1.69620 1.45198 1.18605 1.20750 0.85822 0.77909 0.80387 0.80361 1.19207 1.20783 1.20732 0.94170 0.89653 0.93971 0.92419 0.92532 0.92038 0.90807 0.91238 0.74945 0.90970 0.90505 0.92252 0.88554 0.91935 0.88597 0.94648 0.87453 0.88989 0.93172 0.77589 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.69 10.24 -35.23 -0.36 -5.05 16 3 C 0.08 0.99 4.67 37.15 0.17 1.16 16 4 C -0.11 -1.30 2.96 -91.77 -0.27 -1.57 16 5 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 6 C -0.14 -1.85 8.99 37.16 0.33 -1.52 16 7 C 0.52 7.16 7.15 -10.98 -0.08 7.08 16 8 O -0.55 -9.13 15.92 5.55 0.09 -9.05 16 9 N -0.71 -8.83 4.94 -60.29 -0.30 -9.13 16 10 C 0.13 1.48 4.72 -4.04 -0.02 1.47 16 11 C 0.03 0.36 2.25 -67.60 -0.15 0.21 16 12 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 13 C 0.07 0.78 6.21 37.21 0.23 1.01 16 14 O -0.39 -4.84 10.83 -35.23 -0.38 -5.23 16 15 C 0.06 0.79 7.01 37.21 0.26 1.05 16 16 C 0.02 0.31 5.31 -3.71 -0.02 0.29 16 17 N -0.51 -7.31 3.49 -227.77 -0.79 -8.10 16 18 C 0.04 0.63 5.30 -4.97 -0.03 0.61 16 19 C 0.45 9.80 7.51 -10.98 -0.08 9.72 16 20 O -0.58 -14.26 14.44 5.54 0.08 -14.18 16 21 N -0.56 -13.73 5.29 -10.96 -0.06 -13.79 16 22 C -0.30 -8.04 9.68 -14.93 -0.14 -8.19 16 23 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 26 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.68 7.96 -51.93 -0.41 0.26 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.92 7.82 -51.92 -0.41 0.51 16 37 H 0.07 0.95 7.57 -51.93 -0.39 0.56 16 38 H 0.41 5.13 6.85 -40.82 -0.28 4.85 16 39 H 0.07 0.93 6.38 -51.93 -0.33 0.60 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.63 7.28 -51.93 -0.38 0.25 16 42 H 0.10 0.85 8.14 -51.92 -0.42 0.42 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 46 H 0.11 1.84 6.43 -51.93 -0.33 1.50 16 47 H 0.09 1.46 5.65 -51.93 -0.29 1.17 16 48 H 0.05 0.78 8.05 -51.93 -0.42 0.37 16 49 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 50 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 402.37 15.07 6.06 6.06 Total: -1.00 -31.51 402.37 -6.89 -38.40 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -8.15 Total: 14.60 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 1.22 Total: 13.25 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.43 Total: -54.48 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.57 Total: -33.51 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.51 -6.89 -38.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326618290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.830 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds