Wall clock time and date at job start Wed Apr 1 2020 02:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00128 * 2 1 4 4 C 1.52998 * 109.46940 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46952 * 55.00320 * 4 3 2 6 6 C 1.52996 * 109.47284 * 295.00137 * 4 3 2 7 7 C 1.50698 * 109.46843 * 175.00166 * 4 3 2 8 8 O 1.21278 * 119.99998 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00061 * 180.02562 * 7 4 3 10 10 C 1.46496 * 120.00086 * 180.02562 * 9 7 4 11 11 C 1.53005 * 109.47221 * 174.94765 * 10 9 7 12 12 H 1.08997 * 109.50852 * 174.36309 * 11 10 9 13 13 C 1.53092 * 109.50688 * 294.45754 * 11 10 9 14 14 O 1.43019 * 109.25976 * 176.78079 * 13 11 10 15 15 C 1.43014 * 113.73882 * 301.33143 * 14 13 11 16 16 C 1.53103 * 109.26177 * 58.66424 * 15 14 13 17 17 N 1.47015 * 109.25794 * 303.15664 * 16 15 14 18 18 C 1.46895 * 111.00206 * 182.39113 * 17 16 15 19 19 C 1.50695 * 109.46948 * 300.98634 * 18 17 16 20 20 O 1.21297 * 120.00337 * 354.44671 * 19 18 17 21 21 N 1.34781 * 120.00180 * 174.44954 * 19 18 17 22 22 C 1.37094 * 120.00167 * 179.97438 * 21 19 18 23 23 H 1.08005 * 120.00310 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00225 * 180.02562 * 22 21 19 25 25 N 1.31416 * 119.99645 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00539 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47081 * 59.99916 * 26 24 22 28 28 H 1.48497 * 109.47444 * 180.02562 * 26 24 22 29 29 H 1.48509 * 109.46808 * 300.00105 * 26 24 22 30 30 H 1.08995 * 109.47040 * 299.99919 * 1 2 3 31 31 H 1.09004 * 109.47120 * 59.99841 * 1 2 3 32 32 H 1.08995 * 109.47246 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46587 * 59.99767 * 3 2 1 34 34 H 1.08998 * 109.46962 * 300.00136 * 3 2 1 35 35 H 1.09005 * 109.46927 * 300.00366 * 6 4 3 36 36 H 1.09003 * 109.47270 * 60.00177 * 6 4 3 37 37 H 1.08996 * 109.47283 * 180.02562 * 6 4 3 38 38 H 0.97001 * 120.00024 * 359.97438 * 9 7 4 39 39 H 1.08995 * 109.47396 * 294.94805 * 10 9 7 40 40 H 1.09005 * 109.47434 * 54.95205 * 10 9 7 41 41 H 1.09003 * 109.50729 * 296.71249 * 13 11 10 42 42 H 1.08997 * 109.51377 * 56.80375 * 13 11 10 43 43 H 1.08997 * 109.51129 * 178.60529 * 15 14 13 44 44 H 1.09006 * 109.50281 * 298.68645 * 15 14 13 45 45 H 1.08993 * 109.50370 * 63.08857 * 16 15 14 46 46 H 1.08992 * 109.50578 * 183.17555 * 16 15 14 47 47 H 1.08996 * 109.47007 * 60.98325 * 18 17 16 48 48 H 1.08996 * 109.47135 * 180.98348 * 18 17 16 49 49 H 0.96997 * 119.99847 * 0.02562 * 21 19 18 50 50 H 0.96998 * 119.99911 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8514 0.5681 -0.8410 6 6 3.9952 0.5368 1.3082 7 6 4.1481 2.5559 -0.1231 8 8 3.4350 3.5336 -0.2035 9 7 5.4884 2.6958 -0.1446 10 6 6.0839 4.0289 -0.2644 11 6 7.6049 3.9212 -0.1381 12 1 8.0557 4.8956 -0.3265 13 6 7.9689 3.4537 1.2735 14 8 9.3860 3.2828 1.3631 15 6 9.9128 2.3411 0.4245 16 6 9.5684 2.7973 -0.9959 17 7 8.1110 2.9479 -1.1169 18 6 7.7330 3.3306 -2.4838 19 6 8.4046 4.6302 -2.8454 20 8 9.0452 5.2346 -2.0114 21 7 8.2934 5.1212 -4.0957 22 6 8.9039 6.3038 -4.4246 23 1 9.4744 6.8419 -3.6819 24 6 8.7888 6.8102 -5.7133 25 7 8.0942 6.1558 -6.6168 26 14 9.6213 8.4212 -6.1618 27 1 11.0865 8.2955 -5.9553 28 1 9.3472 8.7405 -7.5859 29 1 9.0914 9.5087 -5.3003 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.6792 1.1532 2.1498 36 1 3.5521 -0.4551 1.3978 37 1 5.0818 0.4511 1.3089 38 1 6.0587 1.9138 -0.0800 39 1 5.8291 4.4548 -1.2348 40 1 5.6983 4.6716 0.5271 41 1 7.6459 4.2005 1.9989 42 1 7.4734 2.5056 1.4821 43 1 10.9955 2.2831 0.5357 44 1 9.4750 1.3600 0.6085 45 1 10.0512 3.7533 -1.1981 46 1 9.9188 2.0539 -1.7118 47 1 8.0484 2.5528 -3.1792 48 1 6.6513 3.4523 -2.5410 49 1 7.7807 4.6382 -4.7626 50 1 8.0136 6.5095 -7.5164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326618292.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:30 Heat of formation + Delta-G solvation = -180.396017 kcal Electronic energy + Delta-G solvation = -31717.383092 eV Core-core repulsion = 27358.027791 eV Total energy + Delta-G solvation = -4359.355301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68710 -40.78357 -39.53569 -38.75172 -37.03271 -36.08305 -35.25711 -34.63425 -33.36664 -32.22281 -30.36766 -28.37085 -27.76401 -27.07995 -26.61370 -25.25554 -24.28772 -23.28523 -21.58589 -21.01407 -20.73276 -19.81072 -18.53042 -17.84970 -17.68585 -17.54355 -17.05205 -16.98396 -16.66410 -16.57405 -16.26280 -15.93647 -15.82890 -15.76690 -15.61752 -15.40377 -15.18941 -14.69688 -14.51874 -14.38039 -13.81780 -13.58273 -13.45356 -13.30467 -13.15618 -13.10823 -12.98127 -12.79523 -12.49248 -12.42499 -12.26590 -12.25669 -12.17815 -11.96764 -11.82226 -11.49983 -11.38172 -11.08024 -10.84005 -10.65684 -10.60775 -10.04432 -10.03388 -9.14509 -8.50583 -6.00296 1.34006 1.37394 1.47789 1.61505 1.94039 2.03510 2.25118 2.73702 2.95730 3.01297 3.15570 3.20363 3.65591 3.74258 3.80229 3.92053 4.02951 4.07494 4.25060 4.32181 4.33260 4.37381 4.47467 4.49758 4.51475 4.52993 4.59896 4.63124 4.66822 4.67886 4.71170 4.77693 4.86909 4.94277 4.95923 5.04470 5.05583 5.24667 5.34574 5.36574 5.41082 5.75385 5.88113 5.96080 6.15706 6.23398 6.53064 6.58458 7.06988 7.24473 7.49831 8.04162 8.64811 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.002924 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.665539 B = 9574.292676 C =11520.906107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.082 3.918 4 C -0.102 4.102 5 H 0.121 0.879 6 C -0.134 4.134 7 C 0.518 3.482 8 O -0.589 6.589 9 N -0.697 5.697 10 C 0.139 3.861 11 C 0.023 3.977 12 H 0.064 0.936 13 C 0.079 3.921 14 O -0.403 6.403 15 C 0.071 3.929 16 C -0.002 4.002 17 N -0.484 5.484 18 C 0.047 3.953 19 C 0.407 3.593 20 O -0.618 6.618 21 N -0.568 5.568 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.918 5.918 26 Si 0.990 3.010 27 H -0.271 1.271 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.104 0.896 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.420 0.580 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.094 0.906 47 H 0.114 0.886 48 H 0.102 0.898 49 H 0.395 0.605 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.386 -16.539 13.782 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.005 3.995 4 C -0.123 4.123 5 H 0.139 0.861 6 C -0.191 4.191 7 C 0.305 3.695 8 O -0.470 6.470 9 N -0.350 5.350 10 C 0.014 3.986 11 C -0.086 4.086 12 H 0.082 0.918 13 C 0.002 3.998 14 O -0.322 6.322 15 C -0.006 4.006 16 C -0.130 4.130 17 N -0.207 5.207 18 C -0.085 4.085 19 C 0.194 3.806 20 O -0.507 6.507 21 N -0.204 5.204 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.558 5.558 26 Si 0.814 3.186 27 H -0.196 1.196 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.258 0.742 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.123 0.877 44 H 0.099 0.901 45 H 0.060 0.940 46 H 0.112 0.888 47 H 0.132 0.868 48 H 0.120 0.880 49 H 0.229 0.771 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.471 -15.946 14.310 23.040 hybrid contribution 0.356 1.719 -1.564 2.351 sum -8.115 -14.227 12.746 20.754 Atomic orbital electron populations 1.22929 0.79478 1.04025 1.00603 1.87768 1.21315 1.27498 1.95575 1.22137 0.92292 0.84288 1.00762 1.21140 0.94498 0.93076 1.03603 0.86143 1.21711 1.02448 1.01460 0.93489 1.20870 0.82374 0.91266 0.74957 1.90707 1.62049 1.42416 1.51802 1.45733 1.06091 1.09771 1.73365 1.21106 0.90987 0.85270 1.01225 1.22745 0.93771 0.97445 0.94658 0.91811 1.22687 0.81343 1.02042 0.93745 1.87964 1.22390 1.64090 1.57766 1.22757 0.99982 0.92170 0.85677 1.23046 0.88276 1.02015 0.99661 1.62810 1.12690 1.43308 1.01899 1.22152 1.01037 0.93182 0.92103 1.22043 0.85787 0.90157 0.82613 1.90434 1.47405 1.63502 1.49328 1.42123 1.46192 1.21266 1.10846 1.19590 1.30188 0.99951 0.96562 0.90403 1.26025 0.97557 1.02559 0.95021 1.69661 1.40679 1.40750 1.04749 0.85036 0.78558 0.77525 0.77529 1.19602 1.19465 1.19935 0.93377 0.93861 0.87752 0.93046 0.93806 0.92648 0.90065 0.90265 0.74188 0.93711 0.90725 0.88120 0.90232 0.87666 0.90078 0.94028 0.88817 0.86755 0.87980 0.77147 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -7.49 10.24 -148.98 -1.53 -9.02 16 3 C 0.08 1.65 4.67 71.98 0.34 1.99 16 4 C -0.10 -1.79 2.96 -11.54 -0.03 -1.83 16 5 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 6 C -0.13 -1.72 8.99 71.98 0.65 -1.07 16 7 C 0.52 12.38 7.15 87.66 0.63 13.01 16 8 O -0.59 -19.43 15.91 -3.02 -0.05 -19.48 16 9 N -0.70 -14.79 4.94 -463.06 -2.29 -17.08 16 10 C 0.14 3.82 4.67 86.38 0.40 4.22 16 11 C 0.02 0.67 1.91 44.93 0.09 0.76 16 12 H 0.06 2.53 5.62 -2.39 -0.01 2.52 16 13 C 0.08 1.86 6.21 72.01 0.45 2.31 16 14 O -0.40 -11.14 10.83 -148.98 -1.61 -12.76 16 15 C 0.07 1.61 7.01 72.02 0.50 2.11 16 16 C 0.00 -0.06 5.25 86.32 0.45 0.40 16 17 N -0.48 -13.24 4.08 -874.57 -3.57 -16.81 16 18 C 0.05 1.50 5.55 85.56 0.48 1.97 16 19 C 0.41 18.18 7.15 87.65 0.63 18.81 16 20 O -0.62 -31.55 11.16 -3.08 -0.03 -31.59 16 21 N -0.57 -28.45 5.29 -306.98 -1.62 -30.07 16 22 C -0.33 -18.66 9.68 84.04 0.81 -17.84 16 23 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 24 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 25 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 26 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.04 1.00 7.96 -2.39 -0.02 0.98 16 35 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.08 0.99 7.82 -2.39 -0.02 0.97 16 37 H 0.08 0.75 7.56 -2.39 -0.02 0.73 16 38 H 0.42 6.98 6.84 -92.71 -0.63 6.34 16 39 H 0.04 1.49 6.60 -2.39 -0.02 1.47 16 40 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.08 1.43 7.27 -2.39 -0.02 1.41 16 43 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.04 1.63 5.54 -2.39 -0.01 1.61 16 46 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 48 H 0.10 3.14 6.14 -2.39 -0.01 3.12 16 49 H 0.39 19.05 7.90 -92.71 -0.73 18.31 16 50 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -71.11 396.51 -1.69 -72.81 By element: Atomic # 1 Polarization: 42.26 SS G_CDS: -0.40 Total: 41.86 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 7.10 Total: 26.28 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -7.20 Total: -113.13 kcal Atomic # 8 Polarization: -69.62 SS G_CDS: -3.22 Total: -72.84 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -71.11 -1.69 -72.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326618292.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.589 kcal (2) G-P(sol) polarization free energy of solvation -71.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds