Wall clock time and date at job start Wed Apr 1 2020 02:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47211 * 2 1 4 4 C 1.42904 * 114.00117 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47243 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47261 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00011 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00036 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99834 * 179.97438 * 8 6 5 10 10 C 1.53009 * 109.46780 * 174.68827 * 9 8 6 11 11 H 1.09000 * 109.54000 * 174.38152 * 10 9 8 12 12 C 1.53095 * 109.50865 * 294.49020 * 10 9 8 13 13 O 1.43015 * 109.25791 * 176.78638 * 12 10 9 14 14 C 1.43019 * 113.73699 * 301.32609 * 13 12 10 15 15 C 1.53102 * 109.25386 * 58.67524 * 14 13 12 16 16 N 1.47014 * 109.50553 * 54.27732 * 10 9 8 17 17 C 1.46901 * 111.00317 * 57.66800 * 16 10 9 18 18 C 1.50701 * 109.46924 * 64.51216 * 17 16 10 19 19 O 1.21295 * 119.99846 * 354.23814 * 18 17 16 20 20 N 1.34778 * 120.00238 * 174.23793 * 18 17 16 21 21 C 1.37090 * 120.00268 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99871 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00325 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99827 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00453 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46889 * 59.99817 * 25 23 21 27 27 H 1.48501 * 109.47077 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46792 * 299.99883 * 25 23 21 29 29 H 1.08997 * 109.46882 * 60.00123 * 1 2 3 30 30 H 1.09003 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46882 * 300.00311 * 1 2 3 32 32 H 1.09003 * 109.47488 * 239.99937 * 2 1 3 33 33 H 1.08999 * 109.47256 * 120.00254 * 2 1 3 34 34 H 1.08999 * 109.47053 * 60.00006 * 4 3 2 35 35 H 1.08997 * 109.46880 * 300.00164 * 4 3 2 36 36 H 1.08999 * 109.47109 * 60.00018 * 5 4 3 37 37 H 1.08997 * 109.47298 * 299.99885 * 5 4 3 38 38 H 0.97003 * 120.00496 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.47070 * 54.68972 * 9 8 6 40 40 H 1.08994 * 109.47013 * 294.68884 * 9 8 6 41 41 H 1.09005 * 109.50854 * 296.72048 * 12 10 9 42 42 H 1.09004 * 109.50513 * 56.80429 * 12 10 9 43 43 H 1.08996 * 109.50666 * 178.60317 * 14 13 12 44 44 H 1.08992 * 109.51060 * 298.69893 * 14 13 12 45 45 H 1.08999 * 109.50557 * 183.21614 * 15 14 13 46 46 H 1.09003 * 109.50901 * 63.08481 * 15 14 13 47 47 H 1.08996 * 109.47216 * 184.50660 * 17 16 10 48 48 H 1.08998 * 109.46951 * 304.51269 * 17 16 10 49 49 H 0.97000 * 119.99174 * 0.02562 * 20 18 17 50 50 H 0.96996 * 120.00053 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3277 3.0573 0.0012 7 8 6.0152 2.0581 0.0012 8 7 5.9073 4.2740 0.0022 9 6 7.3678 4.3897 0.0027 10 6 7.7628 5.8620 -0.1297 11 1 8.8438 5.9598 -0.0295 12 6 7.3269 6.3870 -1.5002 13 8 7.6310 7.7815 -1.5896 14 6 7.0006 8.5741 -0.5798 15 6 7.4333 8.0713 0.8001 16 7 7.0993 6.6448 0.9230 17 6 7.4472 6.1356 2.2562 18 6 8.9224 6.3271 2.4979 19 8 9.6342 6.7403 1.6069 20 7 9.4507 6.0393 3.7039 21 6 10.7927 6.2130 3.9236 22 1 11.4265 6.5809 3.1303 23 6 11.3374 5.9158 5.1668 24 7 10.5662 5.4677 6.1319 25 14 13.1662 6.1518 5.4659 26 1 13.5233 7.5768 5.2491 27 1 13.4932 5.7658 6.8621 28 1 13.9357 5.2998 4.5241 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8340 0.9764 -0.8891 35 1 3.8332 0.9766 0.8908 36 1 3.4223 3.4216 0.8911 37 1 3.4231 3.4222 -0.8888 38 1 5.3576 5.0732 0.0025 39 1 7.7772 3.8268 -0.8362 40 1 7.7635 3.9899 0.9362 41 1 7.8599 5.8473 -2.2831 42 1 6.2538 6.2392 -1.6221 43 1 7.2976 9.6163 -0.6968 44 1 5.9180 8.4913 -0.6750 45 1 6.9113 8.6351 1.5731 46 1 8.5090 8.2045 0.9152 47 1 6.8816 6.6803 3.0122 48 1 7.2042 5.0747 2.3148 49 1 8.8814 5.7086 4.4163 50 1 10.9464 5.2606 6.9999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326618642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:23 Heat of formation + Delta-G solvation = -157.546233 kcal Electronic energy + Delta-G solvation = -31073.921803 eV Core-core repulsion = 26715.557343 eV Total energy + Delta-G solvation = -4358.364460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.38438 -39.46242 -38.13217 -37.96900 -35.76997 -34.48916 -33.68841 -32.78028 -31.43442 -31.36981 -30.29864 -28.98401 -26.64496 -25.47657 -23.84271 -23.74540 -23.06107 -22.31781 -20.51248 -19.99221 -19.17466 -17.94587 -17.61114 -16.74270 -16.47403 -16.36184 -16.24593 -16.03858 -15.64503 -15.34890 -14.97698 -14.74364 -14.49397 -14.43580 -14.10446 -13.94160 -13.90931 -13.70264 -13.40669 -13.18073 -12.78494 -12.66154 -12.20555 -12.04568 -11.98186 -11.88089 -11.59894 -11.58623 -11.34478 -11.30441 -11.23407 -10.97096 -10.71263 -10.52457 -10.41433 -10.29503 -9.91608 -9.85089 -9.59331 -9.53352 -9.32992 -8.94648 -8.07672 -7.60742 -6.52190 -3.93828 2.61815 2.91903 3.12120 3.19961 3.23925 3.66383 3.74489 3.95044 4.08160 4.09836 4.61403 4.73149 4.81659 4.83711 4.86036 4.93151 4.97354 5.03686 5.11135 5.12830 5.22148 5.28384 5.32724 5.41174 5.45957 5.50541 5.54933 5.57945 5.64338 5.67500 5.75877 5.79407 5.82354 5.83457 5.97530 6.05074 6.10642 6.29649 6.49102 6.58818 6.92308 7.08818 7.13610 7.27486 7.44740 7.54607 7.92843 8.22112 8.46953 9.05407 9.40460 9.90155 10.64063 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.002594 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.291126 B =10791.971317 C =12817.031136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.139 4.139 6 C 0.513 3.487 7 O -0.548 6.548 8 N -0.714 5.714 9 C 0.128 3.872 10 C 0.016 3.984 11 H 0.112 0.888 12 C 0.076 3.924 13 O -0.382 6.382 14 C 0.068 3.932 15 C -0.001 4.001 16 N -0.507 5.507 17 C 0.036 3.964 18 C 0.403 3.597 19 O -0.593 6.593 20 N -0.551 5.551 21 C -0.304 4.304 22 H 0.103 0.897 23 C 0.025 3.975 24 N -0.896 5.896 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.408 0.592 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.050 0.950 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.393 0.607 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.801 -3.610 -11.085 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.179 4.179 6 C 0.299 3.701 7 O -0.426 6.426 8 N -0.367 5.367 9 C 0.005 3.995 10 C -0.093 4.093 11 H 0.129 0.871 12 C -0.002 4.002 13 O -0.301 6.301 14 C -0.009 4.009 15 C -0.129 4.129 16 N -0.232 5.232 17 C -0.095 4.095 18 C 0.188 3.812 19 O -0.481 6.481 20 N -0.186 5.186 21 C -0.434 4.434 22 H 0.121 0.879 23 C -0.177 4.177 24 N -0.537 5.537 25 Si 0.758 3.242 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.198 1.198 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.244 0.756 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.226 0.774 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.286 -3.912 -11.662 21.216 hybrid contribution 1.191 0.022 1.253 1.728 sum -16.096 -3.890 -10.410 19.559 Atomic orbital electron populations 1.21748 0.93743 1.02232 1.03120 1.22444 0.95448 0.83625 1.00301 1.87800 1.21272 1.26719 1.95593 1.22107 0.80494 0.95508 1.01755 1.21450 0.92712 0.98045 1.05658 1.20377 0.89976 0.83495 0.76237 1.90728 1.65369 1.36533 1.49941 1.45942 1.08041 1.08142 1.74561 1.21398 0.79839 0.95523 1.02784 1.22914 1.02386 0.91654 0.92329 0.87094 1.22608 0.99540 0.82153 0.95872 1.87981 1.72305 1.17936 1.51839 1.22623 0.96385 0.94925 0.86928 1.23033 1.03942 0.88559 0.97367 1.62710 1.55575 1.03072 1.01811 1.22109 0.94024 1.01963 0.91443 1.20957 0.90235 0.85775 0.84188 1.90412 1.62114 1.52125 1.43417 1.42041 1.09514 1.55899 1.11127 1.19665 0.83993 1.41687 0.98063 0.87926 1.25309 1.00535 0.96643 0.95242 1.69600 1.36379 1.43837 1.03836 0.85908 0.81939 0.79006 0.77342 1.19833 1.20861 1.19805 0.91887 0.91122 0.91808 0.93357 0.93261 0.92498 0.92356 0.87943 0.88190 0.75586 0.90750 0.90994 0.88891 0.93189 0.88942 0.93180 0.90577 0.89331 0.89216 0.88978 0.77377 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.39 -4.08 10.34 -35.23 -0.36 -4.45 16 4 C 0.08 0.81 5.23 37.16 0.19 1.00 16 5 C -0.14 -1.29 6.07 -27.88 -0.17 -1.46 16 6 C 0.51 6.33 7.83 -10.99 -0.09 6.24 16 7 O -0.55 -8.96 15.98 5.55 0.09 -8.87 16 8 N -0.71 -8.15 5.04 -60.29 -0.30 -8.46 16 9 C 0.13 1.78 4.67 -4.03 -0.02 1.76 16 10 C 0.02 0.24 1.91 -67.60 -0.13 0.11 16 11 H 0.11 2.12 5.60 -51.93 -0.29 1.83 16 12 C 0.08 0.97 6.21 37.21 0.23 1.20 16 13 O -0.38 -5.66 10.83 -35.23 -0.38 -6.04 16 14 C 0.07 0.87 7.01 37.21 0.26 1.13 16 15 C 0.00 -0.02 5.25 -3.71 -0.02 -0.04 16 16 N -0.51 -7.32 4.08 -227.77 -0.93 -8.25 16 17 C 0.04 0.59 5.55 -4.97 -0.03 0.56 16 18 C 0.40 8.76 7.15 -10.98 -0.08 8.68 16 19 O -0.59 -14.47 11.17 5.54 0.06 -14.41 16 20 N -0.55 -13.36 5.29 -10.96 -0.06 -13.42 16 21 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 22 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 23 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 24 N -0.90 -23.91 13.05 55.50 0.72 -23.18 16 25 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.41 3.99 7.43 -40.82 -0.30 3.68 16 39 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 40 H 0.07 1.17 6.60 -51.93 -0.34 0.83 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.55 7.27 -51.93 -0.38 0.17 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.71 5.56 -51.93 -0.29 1.42 16 47 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 48 H 0.09 1.45 6.15 -51.93 -0.32 1.13 16 49 H 0.39 9.24 7.90 -40.82 -0.32 8.91 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 399.66 15.07 6.02 6.02 Total: -1.00 -31.56 399.66 -7.71 -39.27 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -8.09 Total: 14.55 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 0.55 Total: 11.54 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.57 Total: -53.31 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.60 Total: -33.77 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.56 -7.71 -39.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326618642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.280 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds