Wall clock time and date at job start Wed Apr 1 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99919 * 2 1 4 4 C 1.53006 * 109.46626 * 293.94915 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.46691 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00150 * 270.00045 * 6 5 4 8 8 C 1.34780 * 119.99483 * 90.00364 * 6 5 4 9 9 O 1.21275 * 120.00557 * 0.02562 * 8 6 5 10 10 C 1.50706 * 119.99374 * 179.97438 * 8 6 5 11 11 H 1.08992 * 109.52472 * 304.86684 * 10 8 6 12 12 C 1.53138 * 109.52396 * 65.00391 * 10 8 6 13 13 O 1.43075 * 109.15188 * 175.20942 * 12 10 8 14 14 C 1.43075 * 113.59296 * 302.04747 * 13 12 10 15 15 C 1.53138 * 109.15030 * 57.95165 * 14 13 12 16 16 O 1.43074 * 109.15364 * 304.68437 * 15 14 13 17 17 C 1.46906 * 110.99726 * 123.94506 * 2 1 3 18 18 C 1.50705 * 109.46871 * 66.05255 * 17 2 1 19 19 O 1.21290 * 119.99832 * 359.97438 * 18 17 2 20 20 N 1.34774 * 119.99951 * 179.97438 * 18 17 2 21 21 C 1.37101 * 119.99845 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99654 * 0.02562 * 21 20 18 23 23 C 1.38943 * 119.99983 * 179.97438 * 21 20 18 24 24 N 1.31421 * 119.99924 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00366 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46704 * 60.00224 * 25 23 21 27 27 H 1.48499 * 109.47119 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47145 * 300.00449 * 25 23 21 29 29 H 1.08997 * 109.46955 * 60.00491 * 1 2 3 30 30 H 1.09001 * 109.46689 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47393 * 300.00487 * 1 2 3 32 32 H 1.09000 * 109.47263 * 173.95221 * 3 2 1 33 33 H 1.09001 * 109.47582 * 53.94500 * 3 2 1 34 34 H 1.08993 * 109.46955 * 300.00347 * 4 3 2 35 35 H 1.09000 * 109.47050 * 60.00176 * 4 3 2 36 36 H 1.08993 * 109.47839 * 299.99931 * 5 4 3 37 37 H 1.09000 * 109.47160 * 60.00369 * 5 4 3 38 38 H 1.09002 * 109.47045 * 90.00532 * 7 6 5 39 39 H 1.09000 * 109.47114 * 210.00242 * 7 6 5 40 40 H 1.08997 * 109.47404 * 330.00153 * 7 6 5 41 41 H 1.09000 * 109.52316 * 295.10828 * 12 10 8 42 42 H 1.09000 * 109.52648 * 55.24499 * 12 10 8 43 43 H 1.09002 * 109.52533 * 177.84808 * 14 13 12 44 44 H 1.09000 * 109.52286 * 297.98361 * 14 13 12 45 45 H 1.08998 * 109.52795 * 64.58902 * 15 14 13 46 46 H 1.09001 * 109.52788 * 184.78685 * 15 14 13 47 47 H 1.08999 * 109.46669 * 186.04629 * 17 2 1 48 48 H 1.08990 * 109.47425 * 306.05171 * 17 2 1 49 49 H 0.96996 * 120.00113 * 0.02562 * 20 18 17 50 50 H 0.96995 * 119.99999 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0573 -1.3184 5 6 2.1792 3.4859 -1.3181 6 7 1.8313 4.1425 -2.5808 7 6 2.7402 4.0556 -3.7264 8 6 0.6749 4.8264 -2.6883 9 8 -0.0774 4.8988 -1.7397 10 6 0.3172 5.5023 -3.9869 11 1 1.1228 6.1746 -4.2816 12 6 0.1099 4.4442 -5.0744 13 8 -0.3375 5.0845 -6.2731 14 6 -1.5474 5.8299 -6.1068 15 6 -1.3401 6.8880 -5.0193 16 8 -0.8927 6.2477 -3.8206 17 6 1.9955 -0.7658 1.1378 18 6 1.6370 -2.2204 0.9731 19 8 1.0048 -2.5831 0.0036 20 7 2.0189 -3.1180 1.9031 21 6 1.6923 -4.4411 1.7535 22 1 1.1294 -4.7641 0.8903 23 6 2.0865 -5.3666 2.7120 24 7 2.7719 -4.9735 3.7622 25 14 1.6422 -7.1695 2.5080 26 1 2.2332 -7.6851 1.2470 27 1 2.1749 -7.9437 3.6578 28 1 0.1650 -7.3126 2.4572 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.0798 1.3445 0.1083 33 1 1.5611 1.9275 0.8308 34 1 2.0659 1.5013 -2.1492 35 1 0.5472 2.0843 -1.4267 36 1 1.7445 4.0417 -0.4874 37 1 3.2635 3.4593 -1.2097 38 1 2.4891 3.1792 -4.3238 39 1 2.6410 4.9526 -4.3377 40 1 3.7668 3.9705 -3.3701 41 1 1.0515 3.9295 -5.2660 42 1 -0.6384 3.7239 -4.7439 43 1 -1.8061 6.3188 -7.0460 44 1 -2.3525 5.1566 -5.8126 45 1 -0.5910 7.6076 -5.3493 46 1 -2.2816 7.4027 -4.8276 47 1 3.0797 -0.6609 1.1758 48 1 1.5611 -0.3871 2.0628 49 1 2.5241 -2.8278 2.6786 50 1 3.0467 -5.6195 4.4315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327191197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:24 Heat of formation + Delta-G solvation = -165.996626 kcal Electronic energy + Delta-G solvation = -30240.868482 eV Core-core repulsion = 25882.137586 eV Total energy + Delta-G solvation = -4358.730897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76281 -40.41990 -40.12043 -38.25071 -37.26253 -36.71421 -35.87776 -33.82966 -33.26391 -32.23820 -29.63491 -29.18811 -28.14853 -27.41526 -26.65391 -25.71982 -24.21149 -22.70009 -21.88362 -20.99909 -20.54049 -19.83996 -18.62031 -18.11227 -17.84879 -17.74208 -17.21701 -16.88139 -16.62656 -16.60216 -16.46632 -16.36383 -15.93506 -15.73506 -15.40454 -15.15603 -14.99025 -14.64799 -14.56123 -14.34201 -13.96461 -13.76459 -13.50851 -13.48578 -13.19377 -13.05789 -13.00721 -12.86741 -12.68598 -12.57160 -12.48499 -12.40667 -12.28717 -12.11565 -11.95383 -11.64198 -11.53285 -11.44756 -10.85246 -10.32994 -10.28626 -9.99271 -9.78417 -9.22739 -8.45424 -5.94104 1.35335 1.40072 1.41659 1.52642 1.60160 2.06590 2.29098 2.59718 2.69893 2.83905 3.21172 3.32008 3.42699 3.44272 3.73888 3.91424 3.93731 4.06173 4.09514 4.15621 4.17856 4.27628 4.37469 4.38197 4.40815 4.44547 4.48903 4.53339 4.58599 4.59985 4.65293 4.74210 4.74314 4.76633 4.78986 4.95709 5.02466 5.14167 5.27604 5.41703 5.46179 5.81942 5.82046 5.89056 6.05981 6.21133 6.23895 6.62170 6.99674 7.14068 7.57716 8.13973 8.71712 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.001681 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.007410 B =16650.544923 C =17063.709836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.536 5.536 3 C 0.059 3.941 4 C -0.120 4.120 5 C 0.121 3.879 6 N -0.606 5.606 7 C 0.057 3.943 8 C 0.514 3.486 9 O -0.567 6.567 10 C 0.042 3.958 11 H 0.120 0.880 12 C 0.035 3.965 13 O -0.381 6.381 14 C 0.015 3.985 15 C 0.019 3.981 16 O -0.388 6.388 17 C 0.057 3.943 18 C 0.441 3.559 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.099 0.901 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.140 0.860 42 H 0.049 0.951 43 H 0.136 0.864 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.116 0.884 48 H 0.064 0.936 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 26.706 -17.470 31.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.260 5.260 3 C -0.069 4.069 4 C -0.159 4.159 5 C -0.002 4.002 6 N -0.339 5.339 7 C -0.084 4.084 8 C 0.301 3.699 9 O -0.445 6.445 10 C -0.019 4.019 11 H 0.137 0.863 12 C -0.042 4.042 13 O -0.299 6.299 14 C -0.061 4.061 15 C -0.057 4.057 16 O -0.307 6.307 17 C -0.074 4.074 18 C 0.228 3.772 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.199 1.199 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.157 0.843 42 H 0.067 0.933 43 H 0.154 0.846 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.143 0.857 47 H 0.134 0.866 48 H 0.082 0.918 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.074 26.179 -17.888 31.725 hybrid contribution -0.626 -0.580 1.389 1.631 sum 0.448 25.598 -16.499 30.458 Atomic orbital electron populations 1.22369 0.87632 1.01867 0.99952 1.61544 1.08251 1.13911 1.42275 1.22140 1.01320 0.86453 0.96940 1.21808 1.00475 0.95516 0.98072 1.21510 1.02042 0.91315 0.85289 1.47870 1.19757 1.51164 1.15101 1.22392 0.94754 1.03555 0.87709 1.20456 0.81387 0.78892 0.89155 1.90720 1.50849 1.61713 1.41235 1.22635 0.90228 0.95776 0.93233 0.86265 1.23329 1.03007 0.93248 0.84637 1.88115 1.42439 1.67766 1.31613 1.23515 0.86682 0.94187 1.01727 1.23594 1.02650 0.94978 0.84435 1.88199 1.40663 1.67470 1.34334 1.21761 1.02360 0.90118 0.93154 1.20796 0.83703 0.88806 0.83895 1.90459 1.45154 1.81462 1.33097 1.41929 1.50074 1.07034 1.22150 1.19617 1.34435 0.84085 1.08139 0.90386 1.26031 0.96273 1.04310 0.94683 1.69669 1.38040 1.37227 1.11182 0.84993 0.78531 0.76789 0.78035 1.19665 1.19441 1.19882 0.91239 0.92546 0.95917 0.88292 0.94541 0.90616 0.94111 0.91478 0.86509 0.90916 0.89037 0.87909 0.84283 0.93290 0.84580 0.92570 0.90223 0.85711 0.86596 0.91834 0.77004 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 8.96 127.69 1.14 2.21 16 2 N -0.54 -17.98 4.50 -927.02 -4.17 -22.15 16 3 C 0.06 1.41 4.96 86.31 0.43 1.84 16 4 C -0.12 -2.60 5.46 30.60 0.17 -2.43 16 5 C 0.12 2.00 5.45 86.38 0.47 2.48 16 6 N -0.61 -9.35 2.87 -846.76 -2.43 -11.78 16 7 C 0.06 0.36 8.96 127.77 1.15 1.50 16 8 C 0.51 11.37 7.10 87.66 0.62 11.99 16 9 O -0.57 -18.59 16.09 15.94 0.26 -18.33 16 10 C 0.04 0.71 2.44 29.90 0.07 0.78 16 11 H 0.12 1.29 7.14 -2.39 -0.02 1.27 16 12 C 0.04 0.51 6.02 72.03 0.43 0.94 16 13 O -0.38 -5.59 10.85 -136.01 -1.48 -7.07 16 14 C 0.02 0.17 7.05 72.03 0.51 0.68 16 15 C 0.02 0.23 7.05 72.03 0.51 0.74 16 16 O -0.39 -8.21 10.03 -122.90 -1.23 -9.44 16 17 C 0.06 2.03 5.45 85.56 0.47 2.49 16 18 C 0.44 21.42 7.47 87.66 0.66 22.08 16 19 O -0.62 -34.69 13.91 -3.06 -0.04 -34.74 16 20 N -0.57 -29.92 5.29 -306.99 -1.62 -31.55 16 21 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 24 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 25 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 29 H 0.07 2.30 6.47 -2.39 -0.02 2.28 16 30 H 0.06 2.45 5.82 -2.39 -0.01 2.44 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 1.88 7.93 -2.39 -0.02 1.86 16 33 H 0.04 0.86 8.12 -2.39 -0.02 0.84 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.11 6.55 -2.39 -0.02 1.10 16 36 H 0.07 1.39 7.42 -2.39 -0.02 1.37 16 37 H 0.12 1.15 7.89 -2.39 -0.02 1.13 16 38 H 0.07 0.39 7.11 -2.39 -0.02 0.37 16 39 H 0.09 0.25 6.04 -2.39 -0.01 0.24 16 40 H 0.10 0.27 7.89 -2.39 -0.02 0.25 16 41 H 0.14 1.26 5.24 -2.39 -0.01 1.25 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.12 3.47 7.93 -2.39 -0.02 3.45 16 48 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 49 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 50 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -81.81 399.06 -0.29 -82.09 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.22 Total: 30.57 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: 7.90 Total: 26.70 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -7.95 Total: -115.20 kcal Atomic # 8 Polarization: -67.08 SS G_CDS: -2.49 Total: -69.57 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -81.81 -0.29 -82.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327191197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.902 kcal (2) G-P(sol) polarization free energy of solvation -81.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds