Wall clock time and date at job start Wed Apr 1 2020 02:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 111.00044 * 2 1 4 4 C 1.52997 * 109.47147 * 66.05187 * 3 2 1 5 5 C 1.53002 * 109.47528 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47509 * 179.97438 * 5 4 3 7 7 C 1.46493 * 120.00041 * 269.99788 * 6 5 4 8 8 C 1.34779 * 119.99600 * 89.99856 * 6 5 4 9 9 O 1.21273 * 120.00399 * 354.65450 * 8 6 5 10 10 C 1.50702 * 119.99765 * 174.65645 * 8 6 5 11 11 H 1.09008 * 109.52049 * 44.04965 * 10 8 6 12 12 C 1.53144 * 109.52490 * 283.91997 * 10 8 6 13 13 O 1.43075 * 109.15168 * 184.78482 * 12 10 8 14 14 C 1.43079 * 113.59264 * 57.94892 * 13 12 10 15 15 C 1.53144 * 109.15338 * 302.05014 * 14 13 12 16 16 O 1.43075 * 109.15168 * 55.31032 * 15 14 13 17 17 C 1.46902 * 110.99531 * 236.04923 * 2 1 3 18 18 C 1.50702 * 109.46887 * 293.95146 * 17 2 1 19 19 O 1.21290 * 120.00464 * 0.02562 * 18 17 2 20 20 N 1.34778 * 119.99566 * 180.02562 * 18 17 2 21 21 C 1.37100 * 119.99707 * 179.72958 * 20 18 17 22 22 H 1.07998 * 119.99980 * 0.26465 * 21 20 18 23 23 C 1.38952 * 119.99769 * 180.27510 * 21 20 18 24 24 N 1.31405 * 120.00493 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99685 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47310 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47252 * 119.99871 * 25 23 21 28 28 H 1.48506 * 109.46796 * 239.99737 * 25 23 21 29 29 H 1.08995 * 109.46916 * 183.95905 * 1 2 3 30 30 H 1.09007 * 109.46810 * 303.95069 * 1 2 3 31 31 H 1.08993 * 109.47282 * 63.95063 * 1 2 3 32 32 H 1.09004 * 109.47155 * 186.05034 * 3 2 1 33 33 H 1.08998 * 109.47575 * 306.04871 * 3 2 1 34 34 H 1.09004 * 109.46968 * 299.99961 * 4 3 2 35 35 H 1.08996 * 109.47597 * 59.99665 * 4 3 2 36 36 H 1.09004 * 109.46832 * 299.99882 * 5 4 3 37 37 H 1.08996 * 109.47087 * 59.99191 * 5 4 3 38 38 H 1.09001 * 109.47126 * 95.13869 * 7 6 5 39 39 H 1.09004 * 109.47106 * 215.13197 * 7 6 5 40 40 H 1.08995 * 109.47218 * 335.13583 * 7 6 5 41 41 H 1.09000 * 109.52301 * 304.68895 * 12 10 8 42 42 H 1.09000 * 109.52319 * 64.88156 * 12 10 8 43 43 H 1.09005 * 109.52021 * 61.94797 * 14 13 12 44 44 H 1.08998 * 109.52466 * 182.07726 * 14 13 12 45 45 H 1.09000 * 109.52319 * 175.21358 * 15 14 13 46 46 H 1.09007 * 109.52454 * 295.34626 * 15 14 13 47 47 H 1.09002 * 109.46569 * 173.95576 * 17 2 1 48 48 H 1.08995 * 109.47201 * 53.95282 * 17 2 1 49 49 H 0.96999 * 120.00652 * 359.97438 * 20 18 17 50 50 H 0.97000 * 120.00254 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 1.3183 5 6 2.1794 3.4860 1.3181 6 7 1.8305 4.1430 2.5801 7 6 0.5735 4.8865 2.6958 8 6 2.6659 4.0633 3.6347 9 8 3.6582 3.3690 3.5713 10 6 2.3670 4.8372 4.8929 11 1 1.3096 4.7386 5.1386 12 6 2.7069 6.3148 4.6779 13 8 2.5266 7.0218 5.9086 14 6 3.3186 6.5097 6.9846 15 6 2.9787 5.0320 7.1996 16 8 3.1590 4.3250 5.9689 17 6 1.9954 -0.7660 -1.1377 18 6 1.6368 -2.2204 -0.9729 19 8 1.0046 -2.5832 -0.0035 20 7 2.0187 -3.1180 -1.9029 21 6 1.6973 -4.4421 -1.7503 22 1 1.1345 -4.7651 -0.8870 23 6 2.0960 -5.3684 -2.7062 24 7 2.7806 -4.9754 -3.7567 25 14 1.6587 -7.1725 -2.4978 26 1 0.8904 -7.3536 -1.2400 27 1 0.8350 -7.6185 -3.6501 28 1 2.9037 -7.9798 -2.4374 29 1 -0.3633 -1.0252 0.0710 30 1 -0.3633 0.5740 0.8525 31 1 -0.3633 0.4513 -0.9232 32 1 3.0798 1.3444 -0.1083 33 1 1.5612 1.9274 -0.8308 34 1 0.5473 2.0844 1.4266 35 1 2.0660 1.5014 2.1492 36 1 3.2637 3.4593 1.2096 37 1 1.7447 4.0416 0.4873 38 1 -0.1928 4.2402 3.1238 39 1 0.7214 5.7518 3.3420 40 1 0.2568 5.2206 1.7079 41 1 3.7435 6.4067 4.3534 42 1 2.0477 6.7333 3.9174 43 1 4.3757 6.6081 6.7377 44 1 3.1033 7.0702 7.8943 45 1 3.6379 4.6135 7.9601 46 1 1.9424 4.9402 7.5251 47 1 3.0797 -0.6611 -1.1757 48 1 1.5610 -0.3872 -2.0628 49 1 2.5240 -2.8280 -2.6784 50 1 3.0585 -5.6221 -4.4242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327191198.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:29 Heat of formation + Delta-G solvation = -138.007253 kcal Electronic energy + Delta-G solvation = -30055.334586 eV Core-core repulsion = 25697.817400 eV Total energy + Delta-G solvation = -4357.517186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05369 -39.49246 -38.59063 -36.95379 -36.49802 -35.82484 -33.86759 -32.93872 -31.53785 -31.17376 -28.81034 -27.91338 -27.39584 -26.46102 -25.35796 -24.60418 -23.10532 -22.00304 -20.73030 -19.87496 -19.09021 -17.93146 -17.79168 -17.48584 -17.20529 -16.59496 -16.22200 -16.01577 -15.69068 -15.53209 -15.34074 -14.85776 -14.71031 -14.56870 -14.20774 -13.98198 -13.71757 -13.56265 -13.44762 -13.30234 -13.24272 -13.06079 -12.51315 -12.24117 -12.11899 -11.97118 -11.89255 -11.61320 -11.44739 -11.34998 -11.21279 -11.18438 -11.10333 -10.88833 -10.52185 -10.31122 -10.18677 -10.04689 -9.72395 -9.44789 -9.06149 -8.39538 -7.93198 -7.77564 -6.37836 -3.78331 2.11463 2.30966 3.10065 3.19145 3.29348 3.32151 3.36939 3.92994 3.95601 4.00874 4.06397 4.29229 4.33107 4.40566 4.49743 4.59271 4.63706 4.80065 4.83455 4.92107 4.98903 5.08071 5.13538 5.17351 5.21026 5.22778 5.28367 5.28757 5.35314 5.46156 5.62854 5.76925 5.78049 5.97516 6.00707 6.06274 6.10196 6.31327 6.31754 6.35729 6.41916 6.62144 6.92800 7.34399 7.47343 7.59337 7.79234 8.11266 8.66700 9.22640 9.59323 10.11594 10.80121 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025887 B = 0.001622 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.365613 B =17257.458576 C =17718.938612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.131 4.131 5 C 0.119 3.881 6 N -0.614 5.614 7 C 0.069 3.931 8 C 0.521 3.479 9 O -0.504 6.504 10 C 0.038 3.962 11 H 0.092 0.908 12 C 0.037 3.963 13 O -0.373 6.373 14 C 0.020 3.980 15 C 0.023 3.977 16 O -0.350 6.350 17 C 0.046 3.954 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.013 0.987 32 H 0.074 0.926 33 H 0.029 0.971 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 28.647 14.356 32.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.170 4.170 5 C -0.003 4.003 6 N -0.349 5.349 7 C -0.074 4.074 8 C 0.307 3.693 9 O -0.376 6.376 10 C -0.024 4.024 11 H 0.110 0.890 12 C -0.041 4.041 13 O -0.292 6.292 14 C -0.057 4.057 15 C -0.054 4.054 16 O -0.268 6.268 17 C -0.085 4.085 18 C 0.231 3.769 19 O -0.461 6.461 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.131 0.869 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.969 27.672 15.258 31.661 hybrid contribution -0.238 -0.345 -1.196 1.267 sum -2.207 27.327 14.062 30.812 Atomic orbital electron populations 1.22568 0.86966 1.04525 0.98567 1.61526 1.08577 1.11416 1.42748 1.22022 1.00339 0.88896 0.95751 1.21936 1.01309 0.94552 0.99182 1.21543 1.01981 0.93108 0.83672 1.47760 1.20924 1.53576 1.12683 1.22013 0.85651 0.96111 1.03655 1.19898 0.83479 0.82161 0.83801 1.90773 1.27212 1.38457 1.81198 1.22597 0.97065 0.94205 0.88486 0.89012 1.23176 1.03194 0.89973 0.87719 1.88121 1.66481 1.55733 1.18834 1.23348 0.96047 0.94944 0.91329 1.23364 1.02698 0.92342 0.86996 1.88259 1.65311 1.55378 1.17836 1.21870 1.00710 0.94142 0.91783 1.19761 0.85357 0.86700 0.85132 1.90478 1.43845 1.80175 1.31599 1.41876 1.49622 1.07322 1.21465 1.19753 1.32735 0.82219 1.07963 0.87881 1.25252 0.96881 1.00532 0.95357 1.69619 1.38173 1.35583 1.11052 0.85805 0.78180 0.82015 0.78368 1.19245 1.20825 1.20774 0.88655 0.92248 0.96884 0.90731 0.95243 0.91673 0.90305 0.89620 0.90247 0.91961 0.91111 0.90079 0.91203 0.86936 0.91661 0.87264 0.86971 0.91732 0.89392 0.93548 0.77513 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.01 60.07 0.54 0.90 16 2 N -0.52 -9.07 4.50 -244.37 -1.10 -10.17 16 3 C 0.06 0.77 4.96 -3.83 -0.02 0.75 16 4 C -0.13 -1.55 5.47 -26.73 -0.15 -1.69 16 5 C 0.12 1.10 5.41 -4.04 -0.02 1.08 16 6 N -0.61 -5.29 2.87 -181.58 -0.52 -5.82 16 7 C 0.07 0.32 9.92 59.84 0.59 0.92 16 8 C 0.52 5.93 6.95 -10.98 -0.08 5.85 16 9 O -0.50 -8.13 16.21 -13.78 -0.22 -8.35 16 10 C 0.04 0.34 2.41 -27.81 -0.07 0.27 16 11 H 0.09 0.65 7.31 -51.92 -0.38 0.27 16 12 C 0.04 0.26 6.09 37.23 0.23 0.48 16 13 O -0.37 -2.81 10.85 -48.80 -0.53 -3.33 16 14 C 0.02 0.12 7.05 37.23 0.26 0.38 16 15 C 0.02 0.15 7.05 37.23 0.26 0.41 16 16 O -0.35 -3.84 10.08 -62.28 -0.63 -4.46 16 17 C 0.05 0.86 5.45 -4.97 -0.03 0.84 16 18 C 0.45 10.83 7.51 -10.98 -0.08 10.75 16 19 O -0.58 -15.97 13.88 5.55 0.08 -15.89 16 20 N -0.57 -14.68 5.29 -10.96 -0.06 -14.74 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.93 13.05 55.50 0.72 -24.20 16 25 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.09 1.94 5.88 -51.93 -0.31 1.64 16 30 H 0.06 0.86 6.30 -51.92 -0.33 0.53 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 33 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.06 0.73 6.47 -51.93 -0.34 0.40 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 0.90 7.50 -51.93 -0.39 0.51 16 37 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.22 4.79 -51.93 -0.25 -0.03 16 40 H 0.08 0.25 7.83 -51.93 -0.41 -0.15 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.11 0.52 6.17 -51.93 -0.32 0.19 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 1.50 7.93 -51.93 -0.41 1.09 16 48 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 49 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 50 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 400.77 15.07 6.04 6.04 Total: -1.00 -36.77 400.77 -8.04 -44.81 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.00 Total: 6.90 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 1.21 Total: 12.83 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.96 Total: -54.93 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.30 Total: -32.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.77 -8.04 -44.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327191198.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.193 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds