Wall clock time and date at job start Wed Apr 1 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00191 * 2 1 4 4 C 1.46900 * 111.00000 * 123.95595 * 2 1 3 5 5 C 1.53001 * 109.47058 * 75.75752 * 4 2 1 6 6 O 1.42899 * 109.47207 * 65.09131 * 5 4 2 7 7 C 1.42900 * 114.00224 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47232 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47185 * 64.99279 * 8 7 6 10 10 C 1.34783 * 119.99886 * 179.97438 * 9 8 7 11 11 O 1.21353 * 119.99719 * 0.02562 * 10 9 8 12 12 C 1.49446 * 119.99981 * 180.02562 * 10 9 8 13 13 O 1.21351 * 120.00146 * 359.97438 * 12 10 9 14 14 N 1.34778 * 120.00238 * 180.02562 * 12 10 9 15 15 C 1.47290 * 125.79076 * 359.97438 * 14 12 10 16 16 C 1.54320 * 107.30601 * 178.92647 * 15 14 12 17 17 C 1.55153 * 102.94569 * 337.82136 * 16 15 14 18 18 O 1.42902 * 111.00286 * 277.42763 * 17 16 15 19 19 C 1.50690 * 111.03956 * 153.58879 * 17 16 15 20 20 H 1.08003 * 120.00183 * 6.32596 * 19 17 16 21 21 C 1.37879 * 120.00042 * 186.32984 * 19 17 16 22 22 N 1.31512 * 119.99901 * 0.02562 * 21 19 17 23 23 Si 1.86806 * 120.00106 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46844 * 90.00122 * 23 21 19 25 25 H 1.48501 * 109.46980 * 209.99916 * 23 21 19 26 26 H 1.48498 * 109.47168 * 330.00071 * 23 21 19 27 27 C 1.47424 * 125.64924 * 180.02562 * 14 12 10 28 28 H 1.08999 * 109.47126 * 296.04756 * 1 2 3 29 29 H 1.09002 * 109.46947 * 56.04375 * 1 2 3 30 30 H 1.09001 * 109.47257 * 176.04379 * 1 2 3 31 31 H 1.09000 * 109.47025 * 188.84587 * 3 2 1 32 32 H 1.08992 * 109.47169 * 308.85119 * 3 2 1 33 33 H 1.09004 * 109.46914 * 68.84961 * 3 2 1 34 34 H 1.09008 * 109.46983 * 315.76039 * 4 2 1 35 35 H 1.08996 * 109.47662 * 195.75787 * 4 2 1 36 36 H 1.09001 * 109.47348 * 305.08897 * 5 4 2 37 37 H 1.09002 * 109.46890 * 185.08663 * 5 4 2 38 38 H 1.09003 * 109.47532 * 59.99142 * 7 6 5 39 39 H 1.09006 * 109.46420 * 299.99566 * 7 6 5 40 40 H 1.09004 * 109.47133 * 304.99798 * 8 7 6 41 41 H 1.09000 * 109.47025 * 184.99545 * 8 7 6 42 42 H 0.96998 * 120.00386 * 0.02562 * 9 8 7 43 43 H 1.09002 * 109.85906 * 59.50542 * 15 14 12 44 44 H 1.09003 * 110.00122 * 298.43550 * 15 14 12 45 45 H 1.08999 * 110.72333 * 219.45058 * 16 15 14 46 46 H 1.09003 * 110.71467 * 96.18367 * 16 15 14 47 47 H 0.96700 * 114.00171 * 173.64920 * 18 17 16 48 48 H 0.97007 * 120.00145 * 180.02562 * 22 21 19 49 49 H 1.08995 * 110.36851 * 85.26138 * 27 14 12 50 50 H 1.08992 * 110.36931 * 323.04180 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8469 -2.2627 0.8570 6 8 2.6712 -2.6234 -0.2532 7 6 2.6054 -4.0080 -0.6004 8 6 3.5218 -4.2783 -1.7954 9 7 4.9142 -4.0419 -1.4062 10 6 5.9041 -4.2190 -2.3036 11 8 5.6418 -4.5737 -3.4341 12 6 7.3246 -3.9785 -1.9065 13 8 7.5868 -3.6233 -0.7761 14 7 8.3145 -4.1550 -2.8040 15 6 8.1425 -4.5808 -4.2035 16 6 9.5443 -4.6179 -4.8476 17 6 10.3692 -3.6677 -3.9400 18 8 10.1740 -2.3029 -4.3158 19 6 11.8320 -4.0285 -3.9670 20 1 12.1881 -4.7896 -4.6455 21 6 12.7160 -3.3869 -3.1255 22 7 12.2823 -2.4606 -2.2989 23 14 14.5293 -3.8346 -3.1585 24 1 15.2329 -2.9771 -4.1458 25 1 15.1162 -3.6221 -1.8111 26 1 14.6802 -5.2605 -3.5448 27 6 9.7524 -3.9549 -2.5478 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0737 1.3466 -0.1580 32 1 1.5239 1.9416 -0.8003 33 1 1.7795 1.8435 0.9585 34 1 1.4383 -0.5081 2.0383 35 1 3.0490 -0.5261 1.2809 36 1 0.8059 -2.4873 0.6247 37 1 2.1534 -2.8293 1.7363 38 1 1.5800 -4.2685 -0.8630 39 1 2.9273 -4.6111 0.2486 40 1 3.2557 -3.6114 -2.6155 41 1 3.4048 -5.3134 -2.1161 42 1 5.1239 -3.7588 -0.5024 43 1 7.5103 -3.8675 -4.7325 44 1 7.6918 -5.5726 -4.2388 45 1 9.5093 -4.2409 -5.8697 46 1 9.9538 -5.6278 -4.8218 47 1 10.5910 -1.6669 -3.7185 48 1 12.9043 -2.0089 -1.7071 49 1 10.1900 -4.8554 -2.1171 50 1 9.9045 -3.1047 -1.8829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328298163.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:20 Heat of formation + Delta-G solvation = -147.981458 kcal Electronic energy + Delta-G solvation = -30615.335574 eV Core-core repulsion = 26257.385873 eV Total energy + Delta-G solvation = -4357.949700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.24598 -38.86599 -38.30088 -37.15821 -37.07677 -34.92322 -34.01755 -32.22185 -30.82652 -30.16754 -29.01136 -27.90408 -27.83478 -25.83012 -24.36060 -24.01249 -22.64681 -21.43532 -21.38183 -19.76484 -19.40943 -17.35223 -17.17462 -17.05257 -16.83702 -16.31581 -15.77394 -15.57135 -15.33181 -15.28892 -15.08641 -14.71081 -14.49769 -14.33572 -14.12764 -13.63580 -13.27822 -13.01480 -12.88854 -12.79556 -12.69434 -12.57888 -12.29284 -12.20439 -12.03231 -11.83324 -11.63914 -11.62406 -11.46008 -11.13352 -11.04340 -11.01519 -10.75014 -10.53067 -10.44990 -10.17734 -9.87684 -9.34293 -9.12780 -9.06362 -8.67711 -8.64016 -8.36552 -7.84531 -6.27091 -4.36572 1.89796 2.74092 3.22182 3.29550 3.32118 3.33386 3.61297 3.70495 3.99262 4.28068 4.54758 4.72304 4.76316 4.80014 4.88454 4.90712 5.00702 5.00914 5.04960 5.08831 5.09916 5.23697 5.32817 5.46391 5.49278 5.54442 5.56706 5.66478 5.68050 5.84008 5.88315 6.10926 6.27858 6.41365 6.56449 6.65083 6.69103 6.77159 6.85556 6.89387 6.97552 7.21830 7.32156 7.38332 7.74818 7.95993 8.04918 8.13208 8.53154 8.67640 9.31190 9.39818 10.80047 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.002148 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.895684 B =13029.390907 C =13799.450984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.539 5.539 3 C 0.025 3.975 4 C 0.053 3.947 5 C 0.069 3.931 6 O -0.367 6.367 7 C 0.049 3.951 8 C 0.124 3.876 9 N -0.701 5.701 10 C 0.510 3.490 11 O -0.520 6.520 12 C 0.509 3.491 13 O -0.538 6.538 14 N -0.576 5.576 15 C 0.112 3.888 16 C -0.122 4.122 17 C 0.248 3.752 18 O -0.581 6.581 19 C -0.536 4.536 20 H 0.068 0.932 21 C 0.070 3.930 22 N -0.893 5.893 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.092 3.908 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.414 0.586 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.381 0.619 48 H 0.270 0.730 49 H 0.067 0.933 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.732 0.240 6.915 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.123 4.123 4 C -0.075 4.075 5 C -0.008 4.008 6 O -0.286 6.286 7 C -0.028 4.028 8 C 0.000 4.000 9 N -0.356 5.356 10 C 0.291 3.709 11 O -0.396 6.396 12 C 0.291 3.709 13 O -0.417 6.417 14 N -0.308 5.308 15 C -0.010 4.010 16 C -0.160 4.160 17 C 0.207 3.793 18 O -0.389 6.389 19 C -0.574 4.574 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.532 5.532 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.029 4.029 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.250 0.750 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.230 0.770 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.847 -0.072 5.855 23.585 hybrid contribution 0.817 0.412 1.906 2.114 sum -22.029 0.340 7.761 23.359 Atomic orbital electron populations 1.22453 0.87665 1.02117 1.00355 1.61883 1.07497 1.13944 1.42924 1.22402 1.01484 0.88393 1.00030 1.22189 1.01559 0.92437 0.91294 1.22491 0.94242 0.95090 0.89016 1.88069 1.66448 1.23911 1.50125 1.22745 0.99151 0.83857 0.97062 1.21419 0.79630 1.01965 0.96954 1.45641 1.05627 1.68528 1.15785 1.20388 0.86990 0.78251 0.85234 1.90721 1.84405 1.44960 1.19471 1.19566 0.85439 0.80658 0.85268 1.90720 1.83813 1.47645 1.19562 1.48709 1.08218 1.62089 1.11749 1.22174 0.98374 0.99512 0.80984 1.22709 0.93164 1.00231 0.99854 1.19650 0.92330 0.80334 0.86944 1.86134 1.79111 1.17302 1.56370 1.21462 0.91648 1.22350 1.21950 0.91397 1.25095 0.99709 0.94301 0.94201 1.69716 1.35754 1.24745 1.22978 0.86391 0.83999 0.79008 0.77429 1.20391 1.21046 1.19693 1.23471 0.74839 1.02098 1.02475 0.95892 0.91306 0.91486 0.90884 0.91365 0.95842 0.93139 0.89624 0.93379 0.92950 0.91667 0.92629 0.90106 0.89756 0.74976 0.91175 0.91766 0.90541 0.90371 0.76967 0.91993 0.91499 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.39 60.07 0.56 0.72 16 2 N -0.54 -4.90 4.90 -251.26 -1.23 -6.13 16 3 C 0.03 0.20 9.52 60.06 0.57 0.78 16 4 C 0.05 0.43 5.38 -3.82 -0.02 0.41 16 5 C 0.07 0.54 6.13 37.16 0.23 0.76 16 6 O -0.37 -3.85 10.24 -35.23 -0.36 -4.21 16 7 C 0.05 0.41 6.07 37.16 0.23 0.63 16 8 C 0.12 1.33 6.06 -4.04 -0.02 1.31 16 9 N -0.70 -9.80 5.50 -60.73 -0.33 -10.14 16 10 C 0.51 9.04 7.86 -11.58 -0.09 8.95 16 11 O -0.52 -9.81 14.15 5.49 0.08 -9.73 16 12 C 0.51 10.60 7.92 -11.59 -0.09 10.51 16 13 O -0.54 -12.15 16.73 5.50 0.09 -12.06 16 14 N -0.58 -12.55 3.33 -170.79 -0.57 -13.12 16 15 C 0.11 2.23 5.50 -2.92 -0.02 2.21 16 16 C -0.12 -2.53 6.13 -24.90 -0.15 -2.68 16 17 C 0.25 6.08 0.87 -89.61 -0.08 6.00 16 18 O -0.58 -15.02 13.16 -35.23 -0.46 -15.48 16 19 C -0.54 -13.94 8.27 -34.44 -0.28 -14.23 16 20 H 0.07 1.73 7.79 -52.48 -0.41 1.32 16 21 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 22 N -0.89 -23.73 10.69 55.43 0.59 -23.13 16 23 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 C 0.09 2.23 5.38 -2.51 -0.01 2.21 16 28 H 0.02 0.14 8.09 -51.93 -0.42 -0.28 16 29 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.07 0.43 6.80 -51.93 -0.35 0.08 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 33 H 0.02 0.17 8.13 -51.93 -0.42 -0.26 16 34 H 0.05 0.33 7.96 -51.92 -0.41 -0.09 16 35 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 36 H 0.05 0.32 6.78 -51.93 -0.35 -0.03 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.41 5.60 7.94 -40.82 -0.32 5.28 16 43 H 0.07 1.42 7.59 -51.93 -0.39 1.02 16 44 H 0.06 1.17 7.71 -51.93 -0.40 0.77 16 45 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 47 H 0.38 10.00 7.57 45.56 0.34 10.35 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.07 1.64 8.03 -51.93 -0.42 1.23 16 50 H 0.09 2.42 7.32 -51.93 -0.38 2.04 16 LS Contribution 408.40 15.07 6.15 6.15 Total: -1.00 -30.97 408.40 -8.04 -39.01 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -7.70 Total: 14.22 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 0.72 Total: 19.32 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -1.54 Total: -52.52 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.65 Total: -41.48 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.97 -8.04 -39.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328298163.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.970 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds