Wall clock time and date at job start Wed Apr 1 2020 02:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00191 * 2 1 4 4 C 1.46900 * 111.00000 * 123.95595 * 2 1 3 5 5 C 1.53001 * 109.47058 * 75.75752 * 4 2 1 6 6 O 1.42899 * 109.47207 * 65.09131 * 5 4 2 7 7 C 1.42900 * 114.00224 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47232 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47185 * 64.99279 * 8 7 6 10 10 C 1.34783 * 119.99886 * 179.97438 * 9 8 7 11 11 O 1.21353 * 119.99719 * 0.02562 * 10 9 8 12 12 C 1.49446 * 119.99981 * 180.02562 * 10 9 8 13 13 O 1.21351 * 120.00146 * 359.97438 * 12 10 9 14 14 N 1.34778 * 120.00238 * 180.02562 * 12 10 9 15 15 C 1.47290 * 125.79076 * 359.97438 * 14 12 10 16 16 C 1.54320 * 107.30601 * 178.92647 * 15 14 12 17 17 C 1.55153 * 102.94569 * 337.82136 * 16 15 14 18 18 O 1.42902 * 111.00286 * 277.42763 * 17 16 15 19 19 C 1.50690 * 111.03956 * 153.58879 * 17 16 15 20 20 H 1.08003 * 120.00183 * 6.32596 * 19 17 16 21 21 C 1.37879 * 120.00042 * 186.32984 * 19 17 16 22 22 N 1.31512 * 119.99901 * 0.02562 * 21 19 17 23 23 Si 1.86806 * 120.00106 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46844 * 90.00122 * 23 21 19 25 25 H 1.48501 * 109.46980 * 209.99916 * 23 21 19 26 26 H 1.48498 * 109.47168 * 330.00071 * 23 21 19 27 27 C 1.47424 * 125.64924 * 180.02562 * 14 12 10 28 28 H 1.08999 * 109.47126 * 296.04756 * 1 2 3 29 29 H 1.09002 * 109.46947 * 56.04375 * 1 2 3 30 30 H 1.09001 * 109.47257 * 176.04379 * 1 2 3 31 31 H 1.09000 * 109.47025 * 188.84587 * 3 2 1 32 32 H 1.08992 * 109.47169 * 308.85119 * 3 2 1 33 33 H 1.09004 * 109.46914 * 68.84961 * 3 2 1 34 34 H 1.09008 * 109.46983 * 315.76039 * 4 2 1 35 35 H 1.08996 * 109.47662 * 195.75787 * 4 2 1 36 36 H 1.09001 * 109.47348 * 305.08897 * 5 4 2 37 37 H 1.09002 * 109.46890 * 185.08663 * 5 4 2 38 38 H 1.09003 * 109.47532 * 59.99142 * 7 6 5 39 39 H 1.09006 * 109.46420 * 299.99566 * 7 6 5 40 40 H 1.09004 * 109.47133 * 304.99798 * 8 7 6 41 41 H 1.09000 * 109.47025 * 184.99545 * 8 7 6 42 42 H 0.96998 * 120.00386 * 0.02562 * 9 8 7 43 43 H 1.09002 * 109.85906 * 59.50542 * 15 14 12 44 44 H 1.09003 * 110.00122 * 298.43550 * 15 14 12 45 45 H 1.08999 * 110.72333 * 219.45058 * 16 15 14 46 46 H 1.09003 * 110.71467 * 96.18367 * 16 15 14 47 47 H 0.96700 * 114.00171 * 173.64920 * 18 17 16 48 48 H 0.97007 * 120.00145 * 180.02562 * 22 21 19 49 49 H 1.08995 * 110.36851 * 85.26138 * 27 14 12 50 50 H 1.08992 * 110.36931 * 323.04180 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8469 -2.2627 0.8570 6 8 2.6712 -2.6234 -0.2532 7 6 2.6054 -4.0080 -0.6004 8 6 3.5218 -4.2783 -1.7954 9 7 4.9142 -4.0419 -1.4062 10 6 5.9041 -4.2190 -2.3036 11 8 5.6418 -4.5737 -3.4341 12 6 7.3246 -3.9785 -1.9065 13 8 7.5868 -3.6233 -0.7761 14 7 8.3145 -4.1550 -2.8040 15 6 8.1425 -4.5808 -4.2035 16 6 9.5443 -4.6179 -4.8476 17 6 10.3692 -3.6677 -3.9400 18 8 10.1740 -2.3029 -4.3158 19 6 11.8320 -4.0285 -3.9670 20 1 12.1881 -4.7896 -4.6455 21 6 12.7160 -3.3869 -3.1255 22 7 12.2823 -2.4606 -2.2989 23 14 14.5293 -3.8346 -3.1585 24 1 15.2329 -2.9771 -4.1458 25 1 15.1162 -3.6221 -1.8111 26 1 14.6802 -5.2605 -3.5448 27 6 9.7524 -3.9549 -2.5478 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0737 1.3466 -0.1580 32 1 1.5239 1.9416 -0.8003 33 1 1.7795 1.8435 0.9585 34 1 1.4383 -0.5081 2.0383 35 1 3.0490 -0.5261 1.2809 36 1 0.8059 -2.4873 0.6247 37 1 2.1534 -2.8293 1.7363 38 1 1.5800 -4.2685 -0.8630 39 1 2.9273 -4.6111 0.2486 40 1 3.2557 -3.6114 -2.6155 41 1 3.4048 -5.3134 -2.1161 42 1 5.1239 -3.7588 -0.5024 43 1 7.5103 -3.8675 -4.7325 44 1 7.6918 -5.5726 -4.2388 45 1 9.5093 -4.2409 -5.8697 46 1 9.9538 -5.6278 -4.8218 47 1 10.5910 -1.6669 -3.7185 48 1 12.9043 -2.0089 -1.7071 49 1 10.1900 -4.8554 -2.1171 50 1 9.9045 -3.1047 -1.8829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328298163.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:19 Heat of formation + Delta-G solvation = -174.092820 kcal Electronic energy + Delta-G solvation = -30616.467847 eV Core-core repulsion = 26257.385873 eV Total energy + Delta-G solvation = -4359.081974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76831 -40.08684 -39.33610 -38.84674 -37.84598 -36.35838 -35.56540 -34.23684 -31.93958 -31.59425 -29.89651 -29.61118 -28.47002 -27.61121 -25.58441 -24.92678 -23.93191 -22.72552 -21.98869 -21.55159 -20.94453 -19.15086 -18.75897 -18.08076 -17.83359 -17.33384 -17.19934 -17.05413 -16.70298 -16.29983 -16.07343 -16.04491 -15.69947 -15.65027 -15.25045 -14.85624 -14.73263 -14.65826 -14.38586 -13.97295 -13.91200 -13.51582 -13.34292 -13.30086 -13.18449 -13.04769 -12.83863 -12.68749 -12.62642 -12.52524 -12.48692 -12.34983 -12.23625 -12.21680 -12.09666 -11.75606 -11.20991 -10.75504 -10.59204 -10.46576 -10.33960 -10.27735 -9.63151 -9.24144 -8.24267 -6.41272 0.36843 1.30602 1.44850 1.46498 1.55956 2.14941 2.38301 2.53332 2.73147 3.01537 3.03941 3.35939 3.78481 3.86865 4.06764 4.12457 4.15974 4.16889 4.21106 4.32853 4.33529 4.45341 4.49576 4.50433 4.54126 4.63327 4.67242 4.72662 4.74961 4.77288 4.85416 4.90785 4.98664 5.00817 5.04678 5.06825 5.15063 5.20795 5.34391 5.44315 5.75115 5.99649 6.05470 6.08315 6.10908 6.37861 6.38711 6.63562 6.69455 6.94954 7.27191 7.35368 8.81389 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.002148 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.895684 B =13029.390907 C =13799.450984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.562 5.562 3 C 0.026 3.974 4 C 0.051 3.949 5 C 0.067 3.933 6 O -0.398 6.398 7 C 0.053 3.947 8 C 0.120 3.880 9 N -0.684 5.684 10 C 0.516 3.484 11 O -0.532 6.532 12 C 0.501 3.499 13 O -0.562 6.562 14 N -0.584 5.584 15 C 0.120 3.880 16 C -0.115 4.115 17 C 0.232 3.768 18 O -0.588 6.588 19 C -0.554 4.554 20 H 0.071 0.929 21 C 0.026 3.974 22 N -0.915 5.915 23 Si 0.966 3.034 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.265 1.265 27 C 0.106 3.894 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.417 0.583 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.374 0.626 48 H 0.270 0.730 49 H 0.057 0.943 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.296 -1.029 6.971 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.287 5.287 3 C -0.122 4.122 4 C -0.077 4.077 5 C -0.009 4.009 6 O -0.317 6.317 7 C -0.023 4.023 8 C -0.002 4.002 9 N -0.337 5.337 10 C 0.296 3.704 11 O -0.409 6.409 12 C 0.285 3.715 13 O -0.443 6.443 14 N -0.316 5.316 15 C -0.002 4.002 16 C -0.153 4.153 17 C 0.192 3.808 18 O -0.396 6.396 19 C -0.592 4.592 20 H 0.089 0.911 21 C -0.175 4.175 22 N -0.554 5.554 23 Si 0.791 3.209 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.189 1.189 27 C -0.016 4.016 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.253 0.747 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.223 0.777 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.463 -1.352 5.914 25.204 hybrid contribution 1.233 0.847 1.937 2.448 sum -23.230 -0.505 7.852 24.526 Atomic orbital electron populations 1.22462 0.86427 1.02635 1.00866 1.61891 1.08810 1.14232 1.43728 1.22365 1.00553 0.88548 1.00735 1.22228 1.00796 0.92851 0.91797 1.22617 0.94638 0.94823 0.88852 1.88026 1.67393 1.25087 1.51234 1.22799 0.99807 0.83278 0.96452 1.21707 0.77757 1.02718 0.98011 1.45695 1.06343 1.66541 1.15141 1.19754 0.86000 0.79044 0.85618 1.90713 1.84148 1.46229 1.19850 1.20275 0.86844 0.79666 0.84755 1.90695 1.84550 1.48448 1.20577 1.48764 1.07466 1.62563 1.12784 1.22198 0.97827 1.00532 0.79657 1.22725 0.92921 1.00023 0.99607 1.19893 0.92677 0.80157 0.88104 1.86127 1.79061 1.18036 1.56330 1.21750 0.92673 1.22614 1.22168 0.91117 1.25837 1.03555 0.94223 0.93844 1.69831 1.36838 1.25385 1.23349 0.85428 0.79256 0.78968 0.77209 1.20192 1.21057 1.18907 1.23055 0.76715 1.00125 1.01718 0.94958 0.91255 0.90883 0.92434 0.90925 0.94881 0.91429 0.91311 0.92033 0.91453 0.89018 0.91100 0.91212 0.88022 0.74660 0.91429 0.89541 0.89643 0.88785 0.77747 0.92067 0.92493 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.39 127.69 1.20 1.49 16 2 N -0.56 -9.73 4.90 -948.85 -4.65 -14.37 16 3 C 0.03 0.42 9.52 127.69 1.22 1.64 16 4 C 0.05 0.77 5.38 86.30 0.46 1.24 16 5 C 0.07 0.91 6.13 71.98 0.44 1.35 16 6 O -0.40 -7.66 10.24 -148.98 -1.53 -9.18 16 7 C 0.05 0.74 6.07 71.98 0.44 1.17 16 8 C 0.12 2.33 6.06 86.38 0.52 2.86 16 9 N -0.68 -18.25 5.50 -464.41 -2.55 -20.80 16 10 C 0.52 17.84 7.86 87.27 0.69 18.52 16 11 O -0.53 -19.33 14.15 -3.26 -0.05 -19.37 16 12 C 0.50 20.98 7.92 87.27 0.69 21.67 16 13 O -0.56 -25.85 16.73 -3.25 -0.05 -25.90 16 14 N -0.58 -25.58 3.33 -812.62 -2.71 -28.29 16 15 C 0.12 4.63 5.50 86.68 0.48 5.11 16 16 C -0.12 -4.66 6.13 31.78 0.19 -4.47 16 17 C 0.23 11.47 0.87 -10.14 -0.01 11.46 16 18 O -0.59 -30.96 13.16 -148.98 -1.96 -32.92 16 19 C -0.55 -28.85 8.27 25.60 0.21 -28.64 16 20 H 0.07 3.56 7.79 -2.91 -0.02 3.54 16 21 C 0.03 1.38 5.29 84.66 0.45 1.83 16 22 N -0.92 -49.60 10.69 21.45 0.23 -49.37 16 23 Si 0.97 41.60 29.54 68.60 2.03 43.63 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 27 C 0.11 5.25 5.38 86.87 0.47 5.72 16 28 H 0.03 0.33 8.09 -2.39 -0.02 0.31 16 29 H 0.07 0.83 8.07 -2.39 -0.02 0.81 16 30 H 0.07 0.79 6.80 -2.39 -0.02 0.78 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.06 8.04 -2.39 -0.02 1.04 16 33 H 0.03 0.45 8.13 -2.39 -0.02 0.43 16 34 H 0.07 0.76 7.96 -2.38 -0.02 0.74 16 35 H 0.07 1.24 7.94 -2.39 -0.02 1.22 16 36 H 0.06 0.66 6.78 -2.39 -0.02 0.64 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.42 10.85 7.94 -92.71 -0.74 10.12 16 43 H 0.07 2.66 7.59 -2.39 -0.02 2.64 16 44 H 0.09 2.98 7.71 -2.39 -0.02 2.96 16 45 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 46 H 0.09 3.48 8.03 -2.39 -0.02 3.46 16 47 H 0.37 20.35 7.57 -74.06 -0.56 19.79 16 48 H 0.27 14.02 8.31 -92.70 -0.77 13.25 16 49 H 0.06 2.87 8.03 -2.39 -0.02 2.85 16 50 H 0.06 3.20 7.32 -2.39 -0.02 3.19 16 Total: -1.00 -66.78 408.40 -4.14 -70.92 By element: Atomic # 1 Polarization: 45.07 SS G_CDS: -0.34 Total: 44.72 kcal Atomic # 6 Polarization: 33.50 SS G_CDS: 7.45 Total: 40.95 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -9.68 Total: -112.83 kcal Atomic # 8 Polarization: -83.80 SS G_CDS: -3.59 Total: -87.38 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -66.78 -4.14 -70.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328298163.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.177 kcal (2) G-P(sol) polarization free energy of solvation -66.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds