Wall clock time and date at job start Wed Apr 1 2020 02:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00302 * 2 1 4 4 H 1.09002 * 109.47002 * 29.99978 * 3 2 1 5 5 C 1.52997 * 109.47084 * 270.00169 * 3 2 1 6 6 C 1.52996 * 109.47165 * 299.99829 * 5 3 2 7 7 C 1.53002 * 109.46972 * 300.00293 * 6 5 3 8 8 C 1.52997 * 109.47415 * 59.99860 * 7 6 5 9 9 H 1.09000 * 109.47140 * 59.99976 * 8 7 6 10 10 C 1.52999 * 109.47269 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47486 * 59.99665 * 10 8 7 12 12 C 1.53006 * 109.46997 * 299.99832 * 10 8 7 13 13 O 1.42900 * 109.46819 * 305.00236 * 12 10 8 14 14 N 1.46505 * 109.47266 * 179.97438 * 10 8 7 15 15 C 1.34771 * 120.00080 * 204.99535 * 14 10 8 16 16 O 1.21595 * 120.00093 * 359.97438 * 15 14 10 17 17 N 1.34781 * 120.00124 * 179.97438 * 15 14 10 18 18 C 1.46492 * 119.99835 * 180.02562 * 17 15 14 19 19 C 1.50705 * 109.46708 * 180.02562 * 18 17 15 20 20 O 1.21286 * 120.00323 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99674 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99868 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99788 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00205 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00170 * 180.02562 * 24 22 21 26 26 Si 1.86809 * 119.99995 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.46954 * 89.99515 * 26 24 22 28 28 H 1.48496 * 109.47155 * 209.99547 * 26 24 22 29 29 H 1.48499 * 109.46739 * 329.99942 * 26 24 22 30 30 C 1.52999 * 109.47290 * 149.99514 * 3 2 1 31 31 H 1.09003 * 109.47264 * 300.00061 * 1 2 3 32 32 H 1.08992 * 109.47083 * 59.99999 * 1 2 3 33 33 H 1.08998 * 109.46826 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47140 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47375 * 59.99858 * 5 3 2 36 36 H 1.08992 * 109.47534 * 180.02562 * 6 5 3 37 37 H 1.08996 * 109.47134 * 59.99508 * 6 5 3 38 38 H 1.09000 * 109.46986 * 299.99742 * 7 6 5 39 39 H 1.09001 * 109.47601 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.47164 * 64.99887 * 12 10 8 41 41 H 1.08995 * 109.47123 * 185.00395 * 12 10 8 42 42 H 0.96706 * 114.00139 * 179.97438 * 13 12 10 43 43 H 0.97003 * 119.99519 * 24.99891 * 14 10 8 44 44 H 0.97003 * 119.99475 * 0.02562 * 17 15 14 45 45 H 1.09003 * 109.47624 * 299.99526 * 18 17 15 46 46 H 1.08995 * 109.47816 * 60.00224 * 18 17 15 47 47 H 0.97003 * 120.00583 * 359.97438 * 21 19 18 48 48 H 0.97011 * 120.00538 * 180.02562 * 25 24 22 49 49 H 1.08993 * 109.47839 * 300.00449 * 30 3 2 50 50 H 1.09000 * 109.47160 * 180.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.1515 0.7973 -2.1637 7 6 4.5001 0.7550 -1.4424 8 6 4.2927 0.2891 0.0000 9 1 3.8493 -0.7066 0.0000 10 6 5.6413 0.2475 0.7215 11 1 6.0843 1.2434 0.7215 12 6 6.5756 -0.7263 0.0004 13 8 5.9444 -2.0042 -0.1022 14 7 5.4426 -0.1980 2.1029 15 6 6.3293 0.1484 3.0568 16 8 7.2945 0.8305 2.7709 17 7 6.1463 -0.2610 4.3278 18 6 7.1098 0.1161 5.3648 19 6 6.6781 -0.4647 6.6867 20 8 5.6650 -1.1279 6.7559 21 7 7.4179 -0.2471 7.7921 22 6 7.0250 -0.7750 8.9948 23 1 6.1228 -1.3656 9.0563 24 6 7.7878 -0.5512 10.1343 25 7 7.4114 -1.0576 11.2870 26 14 9.3487 0.4697 10.0278 27 1 9.0227 1.8986 10.2669 28 1 10.3157 0.0041 11.0540 29 1 9.9481 0.3180 8.6776 30 6 3.3589 1.2632 0.7213 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.6607 2.7673 -1.4425 35 1 1.2569 1.8014 -1.9563 36 1 3.2996 1.1294 -3.1912 37 1 2.7081 -0.1984 -2.1637 38 1 4.9435 1.7508 -1.4425 39 1 5.1656 0.0615 -1.9565 40 1 6.7943 -0.3479 -0.9982 41 1 7.5037 -0.8236 0.5634 42 1 6.4806 -2.6730 -0.5499 43 1 4.6728 -0.7425 2.3309 44 1 5.3764 -0.8054 4.5558 45 1 8.0950 -0.2700 5.1032 46 1 7.1541 1.2024 5.4420 47 1 8.2284 0.2830 7.7368 48 1 7.9439 -0.9011 12.0827 49 1 3.2112 0.9313 1.7489 50 1 3.8021 2.2591 0.7217 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330097691.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:13 Heat of formation + Delta-G solvation = -173.235336 kcal Electronic energy + Delta-G solvation = -30881.957499 eV Core-core repulsion = 26522.912708 eV Total energy + Delta-G solvation = -4359.044791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.43624 -39.49644 -38.43239 -37.52525 -36.07996 -34.55822 -34.30880 -33.67422 -31.79160 -31.31222 -30.67452 -28.35941 -27.21476 -26.76770 -24.41998 -23.58993 -22.71629 -21.08837 -20.47494 -19.93569 -19.59705 -18.77427 -18.04815 -17.46517 -16.67951 -16.24644 -15.98849 -15.72217 -15.53670 -15.42514 -15.22035 -14.97523 -14.66575 -14.36366 -14.07169 -13.83854 -13.79829 -13.74804 -13.11804 -12.92949 -12.81288 -12.65152 -12.49466 -12.39415 -12.14688 -12.12648 -12.06365 -11.67702 -11.59750 -11.22093 -11.19370 -10.82457 -10.63094 -10.62465 -10.25758 -10.16888 -10.04497 -9.96357 -9.71394 -9.67479 -9.11035 -8.73455 -8.60854 -8.28002 -6.38608 -3.91048 2.82009 3.01403 3.05980 3.13951 3.38223 3.51920 3.61077 4.05385 4.15287 4.27348 4.35451 4.44695 4.51328 4.66529 4.82894 4.87630 4.92557 5.00499 5.06339 5.14103 5.16471 5.19022 5.24333 5.29501 5.32115 5.38106 5.47747 5.51263 5.57295 5.64416 5.70259 5.72669 5.83036 5.85525 5.89350 5.96533 5.99675 6.06008 6.32302 6.60020 6.70762 6.95332 7.15323 7.47555 7.47770 8.03022 8.25897 8.47129 8.80305 8.84308 9.32382 9.66575 10.73609 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017405 B = 0.002134 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.366862 B =13115.866475 C =13912.041107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.089 3.911 4 H 0.059 0.941 5 C -0.141 4.141 6 C -0.111 4.111 7 C -0.110 4.110 8 C -0.084 4.084 9 H 0.096 0.904 10 C 0.174 3.826 11 H 0.097 0.903 12 C 0.061 3.939 13 O -0.565 6.565 14 N -0.734 5.734 15 C 0.706 3.294 16 O -0.604 6.604 17 N -0.725 5.725 18 C 0.127 3.873 19 C 0.439 3.561 20 O -0.578 6.578 21 N -0.578 5.578 22 C -0.309 4.309 23 H 0.121 0.879 24 C 0.044 3.956 25 N -0.875 5.875 26 Si 0.879 3.121 27 H -0.269 1.269 28 H -0.275 1.275 29 H -0.267 1.267 30 C -0.112 4.112 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.375 0.625 43 H 0.400 0.600 44 H 0.408 0.592 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.374 0.626 48 H 0.275 0.725 49 H 0.072 0.928 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 5.250 -28.679 30.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.031 3.969 4 H 0.077 0.923 5 C -0.179 4.179 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.103 4.103 9 H 0.114 0.886 10 C 0.068 3.932 11 H 0.115 0.885 12 C -0.018 4.018 13 O -0.370 6.370 14 N -0.389 5.389 15 C 0.406 3.594 16 O -0.484 6.484 17 N -0.383 5.383 18 C -0.002 4.002 19 C 0.225 3.775 20 O -0.462 6.462 21 N -0.216 5.216 22 C -0.438 4.438 23 H 0.139 0.861 24 C -0.160 4.160 25 N -0.514 5.514 26 Si 0.705 3.295 27 H -0.194 1.194 28 H -0.200 1.200 29 H -0.192 1.192 30 C -0.149 4.149 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.221 0.779 43 H 0.234 0.766 44 H 0.246 0.754 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.207 0.793 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.698 5.557 -28.281 29.833 hybrid contribution 0.865 0.254 0.116 0.909 sum -6.832 5.811 -28.165 29.559 Atomic orbital electron populations 1.22769 0.81571 1.02660 0.99654 1.87954 1.19083 1.27518 1.94976 1.22121 0.94827 0.84727 0.95210 0.92323 1.22029 1.00029 0.99546 0.96289 1.21375 0.95145 1.00259 0.98044 1.21559 0.97383 1.01144 0.94725 1.21241 0.93640 1.01284 0.94153 0.88559 1.20907 0.95460 0.97123 0.79737 0.88524 1.22703 0.95825 0.84425 0.98852 1.86492 1.46868 1.21268 1.82343 1.45007 1.28534 1.57989 1.07411 1.15869 0.82860 0.80132 0.80565 1.90883 1.31475 1.44227 1.81791 1.44752 1.29967 1.57433 1.06111 1.20780 0.92547 1.00380 0.86474 1.19685 0.86542 0.86280 0.84984 1.90537 1.26729 1.43620 1.85347 1.42120 1.23519 1.47648 1.08269 1.19437 1.11150 1.30684 0.82483 0.86108 1.25064 0.98324 0.97566 0.95010 1.69619 1.39074 1.43536 0.99214 0.86669 0.83155 0.81019 0.78643 1.19416 1.20021 1.19207 1.21703 0.93501 1.00134 0.99602 0.94145 0.94413 0.89737 0.91143 0.92132 0.92335 0.91122 0.92121 0.91512 0.92980 0.93059 0.77877 0.76566 0.75449 0.90014 0.89959 0.79254 0.91424 0.90917 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.52 9.00 -35.23 -0.32 -3.84 16 3 C 0.09 0.72 2.92 -26.73 -0.08 0.64 16 4 H 0.06 0.44 7.79 -51.93 -0.40 0.03 16 5 C -0.14 -0.97 5.63 -26.73 -0.15 -1.12 16 6 C -0.11 -0.79 5.78 -26.73 -0.15 -0.94 16 7 C -0.11 -0.81 4.85 -26.73 -0.13 -0.94 16 8 C -0.08 -0.75 1.48 -90.62 -0.13 -0.88 16 9 H 0.10 1.04 7.10 -51.93 -0.37 0.67 16 10 C 0.17 1.83 1.95 -67.93 -0.13 1.70 16 11 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 12 C 0.06 0.60 6.35 37.16 0.24 0.84 16 13 O -0.56 -5.43 12.73 -35.23 -0.45 -5.88 16 14 N -0.73 -9.06 4.34 -58.67 -0.25 -9.32 16 15 C 0.71 11.20 8.53 -86.92 -0.74 10.45 16 16 O -0.60 -11.21 16.01 5.28 0.08 -11.12 16 17 N -0.73 -12.02 5.53 -66.42 -0.37 -12.39 16 18 C 0.13 2.26 6.15 -5.20 -0.03 2.23 16 19 C 0.44 9.81 7.85 -10.98 -0.09 9.72 16 20 O -0.58 -14.81 15.24 5.55 0.08 -14.73 16 21 N -0.58 -13.60 5.09 -10.96 -0.06 -13.65 16 22 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 23 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 24 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 25 N -0.88 -25.16 13.96 55.50 0.77 -24.39 16 26 Si 0.88 19.16 27.74 -169.99 -4.71 14.45 16 27 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 28 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 29 H -0.27 -5.33 6.52 56.52 0.37 -4.97 16 30 C -0.11 -0.98 4.79 -26.73 -0.13 -1.11 16 31 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 32 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.59 7.68 -51.93 -0.40 0.19 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.48 6.55 -51.93 -0.34 0.14 16 40 H 0.05 0.40 6.71 -51.93 -0.35 0.06 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.37 2.17 9.12 45.56 0.42 2.58 16 43 H 0.40 4.58 8.40 -40.82 -0.34 4.23 16 44 H 0.41 6.74 7.45 -40.82 -0.30 6.44 16 45 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 48 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.07 0.72 7.44 -51.93 -0.39 0.33 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -34.05 399.34 -7.16 -41.21 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -7.28 Total: 19.39 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: -0.69 Total: 14.25 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.10 Total: -59.75 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.60 Total: -35.57 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.05 -7.16 -41.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330097691.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.023 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds