Wall clock time and date at job start Wed Apr 1 2020 01:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47308 * 2 1 4 4 H 1.09001 * 110.43456 * 56.08933 * 3 2 1 5 5 C 1.54812 * 110.48470 * 293.54724 * 3 2 1 6 6 C 1.54994 * 102.08998 * 220.30656 * 5 3 2 7 7 O 1.44386 * 103.49169 * 37.02325 * 6 5 3 8 8 C 1.43740 * 106.97317 * 319.94259 * 7 6 5 9 9 H 1.09008 * 109.87524 * 267.08592 * 8 7 6 10 10 C 1.50704 * 109.88084 * 145.93715 * 8 7 6 11 11 O 1.21274 * 119.99800 * 356.45020 * 10 8 7 12 12 N 1.34774 * 119.99992 * 176.44926 * 10 8 7 13 13 C 1.46502 * 119.99975 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47132 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.46430 * 65.00343 * 14 13 12 16 16 C 1.53004 * 109.46916 * 184.99930 * 14 13 12 17 17 O 1.42898 * 109.46803 * 55.00469 * 16 14 13 18 18 N 1.46900 * 109.47288 * 305.00276 * 14 13 12 19 19 C 1.46901 * 110.99738 * 154.99842 * 18 14 13 20 20 C 1.50700 * 109.46813 * 179.97438 * 19 18 14 21 21 O 1.21290 * 120.00001 * 0.02562 * 20 19 18 22 22 N 1.34778 * 119.99694 * 180.02562 * 20 19 18 23 23 C 1.37096 * 120.00032 * 179.97438 * 22 20 19 24 24 H 1.08007 * 119.99685 * 0.02562 * 23 22 20 25 25 C 1.38944 * 120.00251 * 179.97438 * 23 22 20 26 26 N 1.31418 * 120.00195 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00177 * 0.02562 * 25 23 22 28 28 H 1.48495 * 109.47477 * 89.99184 * 27 25 23 29 29 H 1.48496 * 109.46953 * 209.99730 * 27 25 23 30 30 H 1.48504 * 109.46690 * 329.99404 * 27 25 23 31 31 H 1.08999 * 109.47610 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47566 * 300.00218 * 1 2 3 33 33 H 1.08998 * 109.47108 * 60.00024 * 1 2 3 34 34 H 1.08997 * 109.47212 * 240.00165 * 2 1 3 35 35 H 1.08998 * 109.47108 * 119.99976 * 2 1 3 36 36 H 1.09004 * 110.90657 * 102.11300 * 5 3 2 37 37 H 1.08995 * 110.91171 * 338.50482 * 5 3 2 38 38 H 1.08998 * 110.62386 * 278.52588 * 6 5 3 39 39 H 1.08999 * 110.61601 * 155.52339 * 6 5 3 40 40 H 0.97004 * 120.00152 * 0.02562 * 12 10 8 41 41 H 1.08996 * 109.47178 * 300.00422 * 13 12 10 42 42 H 1.09004 * 109.46690 * 60.00250 * 13 12 10 43 43 H 1.09000 * 109.46946 * 175.00049 * 16 14 13 44 44 H 1.08998 * 109.47125 * 295.00465 * 16 14 13 45 45 H 0.96698 * 113.99870 * 179.97438 * 17 16 14 46 46 H 1.00892 * 111.00098 * 278.95174 * 18 14 13 47 47 H 1.09001 * 109.47118 * 300.00117 * 19 18 14 48 48 H 1.09002 * 109.47188 * 60.00399 * 19 18 14 49 49 H 0.97005 * 120.00246 * 0.02562 * 22 20 19 50 50 H 0.96994 * 120.00172 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6296 1.9913 0.8477 5 6 1.6744 2.1464 -1.3295 6 6 2.9583 2.9613 -1.6291 7 8 4.0213 2.0889 -1.1892 8 6 3.5803 1.4730 0.0324 9 1 3.9215 2.0580 0.8866 10 6 4.1189 0.0683 0.1217 11 8 4.7601 -0.3948 -0.7976 12 7 3.8880 -0.6731 1.2232 13 6 4.4111 -2.0388 1.3098 14 6 4.0111 -2.6541 2.6523 15 1 2.9268 -2.7573 2.6958 16 6 4.6608 -4.0319 2.7957 17 8 6.0741 -3.9124 2.6223 18 7 4.4644 -1.7828 3.7447 19 6 3.6427 -1.9754 4.9471 20 6 4.1368 -1.0675 6.0438 21 8 5.0802 -0.3321 5.8433 22 7 3.5302 -1.0728 7.2474 23 6 3.9800 -0.2474 8.2453 24 1 4.8201 0.4075 8.0668 25 6 3.3544 -0.2524 9.4859 26 7 3.7852 0.5392 10.4424 27 14 1.9009 -1.3845 9.7945 28 1 2.3895 -2.6875 10.3126 29 1 0.9932 -0.7638 10.7925 30 1 1.1644 -1.6020 8.5234 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.8169 2.8063 -1.1972 37 1 1.4842 1.4168 -2.1165 38 1 2.9646 3.8909 -1.0601 39 1 3.0444 3.1630 -2.6968 40 1 3.3748 -0.3028 1.9584 41 1 3.9990 -2.6379 0.4979 42 1 5.4980 -2.0173 1.2299 43 1 4.4489 -4.4320 3.7872 44 1 4.2574 -4.7043 2.0386 45 1 6.5522 -4.7493 2.7007 46 1 5.4413 -1.9342 3.9464 47 1 2.6036 -1.7380 4.7189 48 1 3.7150 -3.0126 5.2744 49 1 2.7759 -1.6613 7.4078 50 1 3.3487 0.5354 11.3085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331725536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:14 Heat of formation + Delta-G solvation = -158.197473 kcal Electronic energy + Delta-G solvation = -31296.657064 eV Core-core repulsion = 26938.264364 eV Total energy + Delta-G solvation = -4358.392700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.79353 -39.05985 -38.35331 -37.66740 -35.60190 -35.07445 -34.10453 -33.57973 -31.71710 -30.79212 -30.39101 -29.30903 -26.40134 -25.89889 -24.02228 -23.72981 -22.92004 -21.33003 -20.98776 -19.80607 -19.45638 -18.49259 -17.72061 -17.20316 -16.94926 -16.53367 -16.05419 -15.67556 -15.46156 -15.20132 -14.88424 -14.83844 -14.76290 -14.48464 -14.20652 -13.92932 -13.77470 -13.50066 -13.30984 -13.08066 -12.81902 -12.59187 -12.45803 -12.31867 -12.13705 -11.88192 -11.82475 -11.72483 -11.52019 -11.37157 -11.35732 -11.21433 -10.94677 -10.88496 -10.64742 -10.26771 -10.19187 -10.01846 -9.61999 -9.46573 -8.85078 -8.66476 -8.26892 -8.21083 -6.35161 -3.86920 2.65480 2.96142 2.97014 3.01663 3.10676 3.68282 3.77790 3.88333 4.05370 4.11906 4.18963 4.35791 4.51915 4.65481 4.73717 4.82055 4.87612 4.89798 4.93994 5.09466 5.10100 5.13769 5.16110 5.19146 5.21598 5.34538 5.37986 5.44587 5.52413 5.53119 5.56700 5.63734 5.74030 5.75454 5.78074 5.84643 5.89093 6.01533 6.02588 6.46675 6.59700 6.97586 7.37397 7.52256 7.54290 7.60462 8.10160 8.30595 8.55059 8.90860 9.37745 9.77744 10.77969 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010479 B = 0.002795 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.263430 B =10015.444448 C =11226.588164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C -0.113 4.113 4 H 0.095 0.905 5 C -0.148 4.148 6 C 0.043 3.957 7 O -0.347 6.347 8 C 0.060 3.940 9 H 0.097 0.903 10 C 0.520 3.480 11 O -0.531 6.531 12 N -0.711 5.711 13 C 0.138 3.862 14 C 0.075 3.925 15 H 0.094 0.906 16 C 0.046 3.954 17 O -0.564 6.564 18 N -0.659 5.659 19 C 0.045 3.955 20 C 0.449 3.551 21 O -0.561 6.561 22 N -0.590 5.590 23 C -0.305 4.305 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.272 1.272 29 H -0.276 1.276 30 H -0.270 1.270 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.409 0.591 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.381 0.619 46 H 0.365 0.635 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.370 0.630 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 -6.261 -20.663 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C -0.132 4.132 4 H 0.113 0.887 5 C -0.185 4.185 6 C -0.034 4.034 7 O -0.265 6.265 8 C -0.001 4.001 9 H 0.115 0.885 10 C 0.305 3.695 11 O -0.407 6.407 12 N -0.366 5.366 13 C 0.014 3.986 14 C -0.036 4.036 15 H 0.112 0.888 16 C -0.034 4.034 17 O -0.369 6.369 18 N -0.293 5.293 19 C -0.088 4.088 20 C 0.234 3.766 21 O -0.443 6.443 22 N -0.230 5.230 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.707 3.293 28 H -0.197 1.197 29 H -0.202 1.202 30 H -0.195 1.195 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.246 0.754 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.228 0.772 46 H 0.187 0.813 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.202 0.798 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.456 -4.858 -21.630 23.727 hybrid contribution -1.255 -2.112 1.468 2.862 sum -9.712 -6.970 -20.161 23.439 Atomic orbital electron populations 1.21761 0.95262 1.01776 1.01886 1.22002 0.96528 0.94967 1.03578 1.22573 0.93019 0.98165 0.99447 0.88670 1.23226 0.98607 0.99617 0.97087 1.23630 0.85734 0.93219 1.00793 1.89007 1.38942 1.59572 1.39003 1.22749 0.94281 0.92775 0.90294 0.88498 1.20202 0.79881 0.86929 0.82499 1.90696 1.39375 1.72511 1.38109 1.45920 1.56248 1.15166 1.19224 1.21178 1.00607 0.81945 0.94879 1.21995 0.99372 0.89629 0.92612 0.88814 1.22831 0.82433 0.98122 0.99996 1.86505 1.18365 1.36686 1.95390 1.60135 1.09162 1.54316 1.05703 1.21795 0.98346 0.97740 0.90937 1.19667 0.86472 0.87207 0.83219 1.90591 1.29460 1.43152 1.81058 1.42205 1.30612 1.38515 1.11660 1.19431 1.16205 1.18237 0.89525 0.86272 1.25043 0.98159 0.97440 0.95518 1.69622 1.41116 1.37430 1.03891 0.86670 0.82701 0.81269 0.78699 1.19708 1.20169 1.19522 0.92639 0.92452 0.92789 0.91521 0.89998 0.89873 0.90198 0.91794 0.88695 0.75422 0.91637 0.90275 0.93085 0.93066 0.77211 0.81288 0.89519 0.93818 0.79766 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.76 37.15 0.36 -0.69 16 2 C -0.13 -1.14 4.11 -26.73 -0.11 -1.25 16 3 C -0.11 -0.98 3.07 -89.09 -0.27 -1.26 16 4 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.15 -1.13 5.84 -24.72 -0.14 -1.28 16 6 C 0.04 0.38 7.72 38.21 0.29 0.68 16 7 O -0.35 -4.71 10.74 -54.80 -0.59 -5.29 16 8 C 0.06 0.72 3.84 -27.31 -0.10 0.61 16 9 H 0.10 1.09 8.14 -51.92 -0.42 0.66 16 10 C 0.52 7.31 5.58 -10.98 -0.06 7.25 16 11 O -0.53 -9.62 16.53 -14.00 -0.23 -9.85 16 12 N -0.71 -8.46 3.66 -60.29 -0.22 -8.68 16 13 C 0.14 1.61 5.26 -4.04 -0.02 1.59 16 14 C 0.08 0.76 2.57 -67.71 -0.17 0.59 16 15 H 0.09 0.77 7.80 -51.93 -0.40 0.37 16 16 C 0.05 0.41 6.72 37.16 0.25 0.65 16 17 O -0.56 -5.68 12.05 -35.23 -0.42 -6.10 16 18 N -0.66 -9.12 5.32 -107.99 -0.57 -9.69 16 19 C 0.04 0.65 5.96 -4.98 -0.03 0.62 16 20 C 0.45 9.60 7.82 -10.98 -0.09 9.51 16 21 O -0.56 -14.55 15.78 5.55 0.09 -14.46 16 22 N -0.59 -13.40 5.09 -10.96 -0.06 -13.46 16 23 C -0.31 -8.41 10.16 -14.94 -0.15 -8.56 16 24 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 25 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 26 N -0.88 -25.32 13.96 55.50 0.77 -24.54 16 27 Si 0.88 18.74 27.74 -169.99 -4.71 14.02 16 28 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 29 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 30 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.35 7.49 -51.93 -0.39 -0.04 16 34 H 0.07 0.69 7.62 -51.93 -0.40 0.29 16 35 H 0.08 0.71 5.14 -51.93 -0.27 0.44 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.64 7.83 -51.93 -0.41 0.23 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.41 4.52 7.21 -40.82 -0.29 4.23 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.14 7.39 -51.93 -0.38 0.75 16 43 H 0.05 0.43 7.35 -51.93 -0.38 0.05 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.38 2.21 9.12 45.56 0.42 2.63 16 46 H 0.37 5.92 7.64 -39.30 -0.30 5.62 16 47 H 0.09 1.06 8.06 -51.93 -0.42 0.65 16 48 H 0.04 0.55 7.36 -51.93 -0.38 0.17 16 49 H 0.37 7.29 5.76 -40.82 -0.24 7.06 16 50 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 400.25 15.07 6.03 6.03 Total: -1.00 -36.42 400.25 -7.47 -43.89 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -7.20 Total: 18.66 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -0.35 Total: 9.48 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.08 Total: -56.38 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -1.16 Total: -35.71 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.71 Total: 14.02 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.42 -7.47 -43.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331725536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.311 kcal (2) G-P(sol) polarization free energy of solvation -36.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds