Wall clock time and date at job start Wed Apr 1 2020 01:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47308 * 2 1 4 4 H 1.09001 * 110.43456 * 56.08933 * 3 2 1 5 5 C 1.54812 * 110.48470 * 293.54724 * 3 2 1 6 6 C 1.54994 * 102.08998 * 220.30656 * 5 3 2 7 7 O 1.44386 * 103.49169 * 37.02325 * 6 5 3 8 8 C 1.43740 * 106.97317 * 319.94259 * 7 6 5 9 9 H 1.09008 * 109.87524 * 267.08592 * 8 7 6 10 10 C 1.50704 * 109.88084 * 145.93715 * 8 7 6 11 11 O 1.21274 * 119.99800 * 356.45020 * 10 8 7 12 12 N 1.34774 * 119.99992 * 176.44926 * 10 8 7 13 13 C 1.46502 * 119.99975 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47132 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.46430 * 65.00343 * 14 13 12 16 16 C 1.53004 * 109.46916 * 184.99930 * 14 13 12 17 17 O 1.42898 * 109.46803 * 55.00469 * 16 14 13 18 18 N 1.46900 * 109.47288 * 305.00276 * 14 13 12 19 19 C 1.46901 * 110.99738 * 154.99842 * 18 14 13 20 20 C 1.50700 * 109.46813 * 179.97438 * 19 18 14 21 21 O 1.21290 * 120.00001 * 0.02562 * 20 19 18 22 22 N 1.34778 * 119.99694 * 180.02562 * 20 19 18 23 23 C 1.37096 * 120.00032 * 179.97438 * 22 20 19 24 24 H 1.08007 * 119.99685 * 0.02562 * 23 22 20 25 25 C 1.38944 * 120.00251 * 179.97438 * 23 22 20 26 26 N 1.31418 * 120.00195 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00177 * 0.02562 * 25 23 22 28 28 H 1.48495 * 109.47477 * 89.99184 * 27 25 23 29 29 H 1.48496 * 109.46953 * 209.99730 * 27 25 23 30 30 H 1.48504 * 109.46690 * 329.99404 * 27 25 23 31 31 H 1.08999 * 109.47610 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47566 * 300.00218 * 1 2 3 33 33 H 1.08998 * 109.47108 * 60.00024 * 1 2 3 34 34 H 1.08997 * 109.47212 * 240.00165 * 2 1 3 35 35 H 1.08998 * 109.47108 * 119.99976 * 2 1 3 36 36 H 1.09004 * 110.90657 * 102.11300 * 5 3 2 37 37 H 1.08995 * 110.91171 * 338.50482 * 5 3 2 38 38 H 1.08998 * 110.62386 * 278.52588 * 6 5 3 39 39 H 1.08999 * 110.61601 * 155.52339 * 6 5 3 40 40 H 0.97004 * 120.00152 * 0.02562 * 12 10 8 41 41 H 1.08996 * 109.47178 * 300.00422 * 13 12 10 42 42 H 1.09004 * 109.46690 * 60.00250 * 13 12 10 43 43 H 1.09000 * 109.46946 * 175.00049 * 16 14 13 44 44 H 1.08998 * 109.47125 * 295.00465 * 16 14 13 45 45 H 0.96698 * 113.99870 * 179.97438 * 17 16 14 46 46 H 1.00892 * 111.00098 * 278.95174 * 18 14 13 47 47 H 1.09001 * 109.47118 * 300.00117 * 19 18 14 48 48 H 1.09002 * 109.47188 * 60.00399 * 19 18 14 49 49 H 0.97005 * 120.00246 * 0.02562 * 22 20 19 50 50 H 0.96994 * 120.00172 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6296 1.9913 0.8477 5 6 1.6744 2.1464 -1.3295 6 6 2.9583 2.9613 -1.6291 7 8 4.0213 2.0889 -1.1892 8 6 3.5803 1.4730 0.0324 9 1 3.9215 2.0580 0.8866 10 6 4.1189 0.0683 0.1217 11 8 4.7601 -0.3948 -0.7976 12 7 3.8880 -0.6731 1.2232 13 6 4.4111 -2.0388 1.3098 14 6 4.0111 -2.6541 2.6523 15 1 2.9268 -2.7573 2.6958 16 6 4.6608 -4.0319 2.7957 17 8 6.0741 -3.9124 2.6223 18 7 4.4644 -1.7828 3.7447 19 6 3.6427 -1.9754 4.9471 20 6 4.1368 -1.0675 6.0438 21 8 5.0802 -0.3321 5.8433 22 7 3.5302 -1.0728 7.2474 23 6 3.9800 -0.2474 8.2453 24 1 4.8201 0.4075 8.0668 25 6 3.3544 -0.2524 9.4859 26 7 3.7852 0.5392 10.4424 27 14 1.9009 -1.3845 9.7945 28 1 2.3895 -2.6875 10.3126 29 1 0.9932 -0.7638 10.7925 30 1 1.1644 -1.6020 8.5234 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.8169 2.8063 -1.1972 37 1 1.4842 1.4168 -2.1165 38 1 2.9646 3.8909 -1.0601 39 1 3.0444 3.1630 -2.6968 40 1 3.3748 -0.3028 1.9584 41 1 3.9990 -2.6379 0.4979 42 1 5.4980 -2.0173 1.2299 43 1 4.4489 -4.4320 3.7872 44 1 4.2574 -4.7043 2.0386 45 1 6.5522 -4.7493 2.7007 46 1 5.4413 -1.9342 3.9464 47 1 2.6036 -1.7380 4.7189 48 1 3.7150 -3.0126 5.2744 49 1 2.7759 -1.6613 7.4078 50 1 3.3487 0.5354 11.3085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331725536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:13 Heat of formation + Delta-G solvation = -190.573937 kcal Electronic energy + Delta-G solvation = -31298.061013 eV Core-core repulsion = 26938.264364 eV Total energy + Delta-G solvation = -4359.796649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.71927 -40.38929 -39.57150 -38.69627 -36.52503 -36.08370 -35.75300 -34.71324 -33.71177 -31.72154 -31.14334 -30.16494 -27.91986 -26.70260 -25.43257 -24.66120 -23.62904 -22.14365 -21.88542 -21.26515 -20.69015 -20.27821 -18.57334 -18.15713 -17.80661 -17.66303 -17.28282 -16.91973 -16.59118 -16.47038 -16.02505 -15.77265 -15.66357 -15.46195 -15.27095 -15.19995 -14.84374 -14.52271 -14.39067 -14.23246 -14.16739 -13.99472 -13.48958 -13.31934 -13.08711 -12.98774 -12.91325 -12.60737 -12.53735 -12.38349 -12.25168 -12.18548 -12.05446 -11.95467 -11.61320 -11.53381 -11.48340 -11.09985 -10.91782 -10.49251 -10.40192 -10.21999 -9.88896 -9.32469 -8.38627 -5.99700 1.31914 1.38199 1.47238 1.58506 2.00680 2.02790 2.25709 2.70096 3.04205 3.18283 3.26171 3.40093 3.63311 3.65447 3.72899 3.84656 4.00133 4.08057 4.20827 4.22929 4.28251 4.37017 4.41958 4.42677 4.48208 4.55692 4.57534 4.61255 4.70923 4.74405 4.79471 4.81500 4.89955 4.98858 5.02735 5.14115 5.19686 5.27945 5.44561 5.47947 5.55609 5.80116 5.93553 6.07236 6.32691 6.59452 6.62900 6.91013 6.92041 7.26297 7.43698 8.01698 8.79285 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010479 B = 0.002795 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.263430 B =10015.444448 C =11226.588164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C -0.108 4.108 4 H 0.115 0.885 5 C -0.140 4.140 6 C 0.034 3.966 7 O -0.386 6.386 8 C 0.055 3.945 9 H 0.099 0.901 10 C 0.515 3.485 11 O -0.581 6.581 12 N -0.698 5.698 13 C 0.141 3.859 14 C 0.081 3.919 15 H 0.128 0.872 16 C 0.047 3.953 17 O -0.592 6.592 18 N -0.675 5.675 19 C 0.060 3.940 20 C 0.448 3.552 21 O -0.615 6.615 22 N -0.590 5.590 23 C -0.327 4.327 24 H 0.052 0.948 25 C -0.018 4.018 26 N -0.938 5.938 27 Si 0.967 3.033 28 H -0.259 1.259 29 H -0.278 1.278 30 H -0.225 1.225 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.415 0.585 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.397 0.603 46 H 0.349 0.651 47 H 0.126 0.874 48 H 0.078 0.922 49 H 0.390 0.610 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.432 -8.621 -21.214 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C -0.127 4.127 4 H 0.133 0.867 5 C -0.178 4.178 6 C -0.042 4.042 7 O -0.305 6.305 8 C -0.006 4.006 9 H 0.117 0.883 10 C 0.302 3.698 11 O -0.460 6.460 12 N -0.352 5.352 13 C 0.016 3.984 14 C -0.029 4.029 15 H 0.145 0.855 16 C -0.033 4.033 17 O -0.400 6.400 18 N -0.308 5.308 19 C -0.072 4.072 20 C 0.236 3.764 21 O -0.499 6.499 22 N -0.232 5.232 23 C -0.456 4.456 24 H 0.070 0.930 25 C -0.216 4.216 26 N -0.579 5.579 27 Si 0.786 3.214 28 H -0.184 1.184 29 H -0.204 1.204 30 H -0.148 1.148 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.253 0.747 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.247 0.753 46 H 0.168 0.832 47 H 0.143 0.857 48 H 0.096 0.904 49 H 0.226 0.774 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.660 -7.248 -22.192 26.557 hybrid contribution 0.213 -1.294 1.568 2.044 sum -12.447 -8.542 -20.624 25.559 Atomic orbital electron populations 1.21727 0.93606 1.02304 1.02557 1.21938 0.97838 0.94484 1.02387 1.22632 0.90431 0.98799 1.00833 0.86723 1.23218 0.98777 0.99575 0.96188 1.23903 0.85357 0.93325 1.01604 1.88967 1.41273 1.60564 1.39692 1.22884 0.96564 0.91150 0.89995 0.88315 1.20704 0.79075 0.87841 0.82184 1.90660 1.41733 1.73726 1.39920 1.45888 1.55427 1.15233 1.18652 1.21167 0.98683 0.81988 0.96518 1.22095 1.01275 0.89664 0.89874 0.85466 1.22884 0.81744 0.97294 1.01392 1.86478 1.19527 1.38445 1.95547 1.60085 1.08157 1.56272 1.06281 1.21744 0.99627 0.97314 0.88471 1.21058 0.84860 0.86539 0.83921 1.90577 1.31802 1.45444 1.82119 1.42008 1.31585 1.38465 1.11191 1.18985 1.15556 1.19202 0.91905 0.92988 1.26154 1.01941 0.99238 0.94252 1.69819 1.43406 1.39899 1.04746 0.85344 0.77480 0.78197 0.80337 1.18385 1.20363 1.14779 0.92237 0.91611 0.92246 0.93777 0.90074 0.87130 0.90778 0.90366 0.87804 0.74665 0.90624 0.93600 0.92037 0.90599 0.75349 0.83186 0.85661 0.90426 0.77399 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.76 71.98 0.70 -0.89 16 2 C -0.13 -1.97 4.11 30.59 0.13 -1.84 16 3 C -0.11 -1.70 3.07 -9.80 -0.03 -1.73 16 4 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 5 C -0.14 -1.88 5.84 31.89 0.19 -1.69 16 6 C 0.03 0.58 7.72 72.66 0.56 1.14 16 7 O -0.39 -10.69 10.74 -130.27 -1.40 -12.09 16 8 C 0.06 1.31 3.84 30.22 0.12 1.43 16 9 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 10 C 0.52 14.80 5.58 87.66 0.49 15.29 16 11 O -0.58 -21.99 16.53 15.70 0.26 -21.74 16 12 N -0.70 -16.22 3.66 -463.06 -1.70 -17.91 16 13 C 0.14 3.15 5.26 86.38 0.45 3.60 16 14 C 0.08 1.40 2.57 44.92 0.12 1.51 16 15 H 0.13 1.40 7.80 -2.39 -0.02 1.38 16 16 C 0.05 0.66 6.72 71.98 0.48 1.14 16 17 O -0.59 -11.18 12.05 -148.98 -1.80 -12.97 16 18 N -0.68 -17.28 5.32 -495.56 -2.63 -19.92 16 19 C 0.06 1.53 5.96 85.56 0.51 2.04 16 20 C 0.45 18.75 7.82 87.66 0.69 19.43 16 21 O -0.62 -32.95 15.78 -3.06 -0.05 -33.00 16 22 N -0.59 -26.09 5.09 -306.98 -1.56 -27.66 16 23 C -0.33 -18.62 10.16 84.04 0.85 -17.77 16 24 H 0.05 3.58 7.39 -2.91 -0.02 3.56 16 25 C -0.02 -0.95 5.50 84.92 0.47 -0.49 16 26 N -0.94 -55.82 13.96 21.66 0.30 -55.52 16 27 Si 0.97 36.98 27.74 68.60 1.90 38.88 16 28 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 29 H -0.28 -10.72 7.11 99.48 0.71 -10.02 16 30 H -0.22 -6.92 6.52 99.48 0.65 -6.27 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.59 7.49 -2.39 -0.02 0.58 16 34 H 0.04 0.88 7.62 -2.39 -0.02 0.86 16 35 H 0.08 1.21 5.14 -2.39 -0.01 1.20 16 36 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.07 1.09 7.83 -2.39 -0.02 1.07 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.42 8.55 7.21 -92.70 -0.67 7.88 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.35 7.39 -2.39 -0.02 1.34 16 43 H 0.06 0.77 7.35 -2.39 -0.02 0.75 16 44 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.40 4.09 9.12 -74.06 -0.68 3.42 16 46 H 0.35 11.12 7.64 -89.70 -0.69 10.44 16 47 H 0.13 2.31 8.06 -2.39 -0.02 2.29 16 48 H 0.08 1.53 7.36 -2.39 -0.02 1.51 16 49 H 0.39 13.87 5.76 -92.70 -0.53 13.33 16 50 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -88.76 400.25 -2.58 -91.34 By element: Atomic # 1 Polarization: 51.03 SS G_CDS: -1.63 Total: 49.41 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 5.72 Total: 21.18 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -5.59 Total: -121.00 kcal Atomic # 8 Polarization: -76.81 SS G_CDS: -2.98 Total: -79.80 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 1.90 Total: 38.88 kcal Total: -88.76 -2.58 -91.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331725536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.237 kcal (2) G-P(sol) polarization free energy of solvation -88.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds