Wall clock time and date at job start Wed Apr 1 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00563 * 2 1 4 4 C 1.52997 * 109.47308 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46971 * 64.99723 * 4 3 2 6 6 C 1.46902 * 110.99713 * 66.04944 * 5 4 3 7 7 C 1.46904 * 110.99850 * 189.99590 * 5 4 3 8 8 C 1.53001 * 109.46979 * 170.00011 * 7 5 4 9 9 N 1.46504 * 109.46889 * 180.02562 * 8 7 5 10 10 C 1.34777 * 119.99827 * 180.02562 * 9 8 7 11 11 O 1.21345 * 120.00010 * 359.97438 * 10 9 8 12 12 C 1.49454 * 119.99788 * 179.97438 * 10 9 8 13 13 O 1.21345 * 120.00202 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99788 * 179.97438 * 12 10 9 15 15 C 1.47027 * 125.64867 * 359.95106 * 14 12 10 16 16 C 1.54367 * 107.28564 * 181.13053 * 15 14 12 17 17 C 1.55156 * 102.92264 * 22.14605 * 16 15 14 18 18 O 1.42894 * 111.00661 * 82.63741 * 17 16 15 19 19 C 1.50705 * 111.00010 * 206.45343 * 17 16 15 20 20 H 1.07993 * 120.00222 * 356.17881 * 19 17 16 21 21 C 1.37881 * 119.99392 * 175.90919 * 19 17 16 22 22 N 1.31509 * 120.00570 * 354.23595 * 21 19 17 23 23 Si 1.86801 * 119.99492 * 174.24147 * 21 19 17 24 24 H 1.48500 * 109.47445 * 94.98741 * 23 21 19 25 25 H 1.48506 * 109.47043 * 214.98367 * 23 21 19 26 26 H 1.48496 * 109.47404 * 334.97778 * 23 21 19 27 27 C 1.47424 * 125.64700 * 179.97438 * 14 12 10 28 28 H 1.09003 * 109.47052 * 300.00081 * 1 2 3 29 29 H 1.08999 * 109.47117 * 60.00121 * 1 2 3 30 30 H 1.08999 * 109.47262 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47014 * 59.99777 * 3 2 1 32 32 H 1.09001 * 109.46796 * 300.00107 * 3 2 1 33 33 H 1.09001 * 109.47103 * 304.99865 * 4 3 2 34 34 H 1.09000 * 109.47021 * 184.99824 * 4 3 2 35 35 H 1.09004 * 109.46678 * 183.95208 * 6 5 4 36 36 H 1.08998 * 109.47081 * 303.94689 * 6 5 4 37 37 H 1.08996 * 109.47463 * 63.95148 * 6 5 4 38 38 H 1.09007 * 109.46948 * 50.00338 * 7 5 4 39 39 H 1.09000 * 109.47449 * 290.00727 * 7 5 4 40 40 H 1.08995 * 109.47006 * 60.00778 * 8 7 5 41 41 H 1.09002 * 109.47174 * 300.00319 * 8 7 5 42 42 H 0.96999 * 120.00200 * 359.97438 * 9 8 7 43 43 H 1.08996 * 109.88083 * 300.51793 * 15 14 12 44 44 H 1.09004 * 109.88118 * 61.68271 * 15 14 12 45 45 H 1.08998 * 110.70797 * 263.79195 * 16 15 14 46 46 H 1.09008 * 110.75397 * 140.50586 * 16 15 14 47 47 H 0.96708 * 113.99643 * 183.17930 * 18 17 16 48 48 H 0.96998 * 120.00806 * 180.02562 * 22 21 19 49 49 H 1.09000 * 110.36750 * 36.99474 * 27 14 12 50 50 H 1.08997 * 110.36842 * 274.66920 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9778 0.5620 -1.2543 6 6 3.6969 1.4345 -2.4023 7 6 5.4036 0.2130 -1.1948 8 6 5.7685 -0.6491 -2.4050 9 7 7.1902 -0.9977 -2.3454 10 6 7.7391 -1.7570 -3.3142 11 8 7.0555 -2.1523 -4.2356 12 6 9.1895 -2.1120 -3.2537 13 8 9.8731 -1.7163 -2.3325 14 7 9.7383 -2.8718 -4.2223 15 6 9.0289 -3.4167 -5.3891 16 6 10.0494 -4.2412 -6.2025 17 6 11.1383 -4.5807 -5.1506 18 8 10.7614 -5.7180 -4.3719 19 6 12.4759 -4.8000 -5.8093 20 1 12.5587 -4.7725 -6.8858 21 6 13.5950 -5.0300 -5.0374 22 7 13.5188 -4.9460 -3.7272 23 14 15.2195 -5.4608 -5.8528 24 1 16.0282 -4.2276 -6.0273 25 1 15.9620 -6.4229 -4.9993 26 1 14.9599 -6.0746 -7.1798 27 6 11.1492 -3.2944 -4.2869 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5683 0.8427 34 1 3.9785 2.1763 0.0902 35 1 3.9698 0.9209 -3.3242 36 1 2.6346 1.6775 -2.4225 37 1 4.2780 2.3522 -2.3119 38 1 5.6036 -0.3432 -0.2789 39 1 6.0015 1.1243 -1.2043 40 1 5.5685 -0.0929 -3.3208 41 1 5.1706 -1.5605 -2.3954 42 1 7.7367 -0.6814 -1.6090 43 1 8.2124 -4.0593 -5.0597 44 1 8.6392 -2.6021 -5.9996 45 1 10.4685 -3.6447 -7.0128 46 1 9.5903 -5.1510 -6.5895 47 1 11.3880 -5.9387 -3.6692 48 1 14.3061 -5.1075 -3.1842 49 1 11.5262 -3.5118 -3.2876 50 1 11.7549 -2.5230 -4.7624 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332211576.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:42 Heat of formation + Delta-G solvation = -144.773999 kcal Electronic energy + Delta-G solvation = -30284.744946 eV Core-core repulsion = 25926.934331 eV Total energy + Delta-G solvation = -4357.810614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31680 -39.00797 -38.40164 -37.33072 -37.13676 -34.98599 -34.08012 -32.24416 -31.00662 -30.20327 -28.87089 -27.88167 -27.04044 -26.29722 -25.53023 -23.77334 -22.50933 -21.47630 -21.28328 -19.76861 -19.38585 -17.34082 -17.12540 -17.02706 -16.95637 -16.37310 -16.08585 -15.68274 -15.50942 -15.39478 -15.12932 -14.68815 -14.53989 -14.43703 -14.16183 -13.86342 -13.58864 -13.05219 -12.95182 -12.87782 -12.76584 -12.47324 -12.26888 -12.24626 -12.04368 -11.79576 -11.68759 -11.52469 -11.42423 -11.21716 -11.06890 -11.04290 -10.75759 -10.54554 -10.49089 -10.20679 -9.99718 -9.35214 -9.18226 -9.11625 -8.72922 -8.72318 -8.40356 -7.87430 -6.29778 -4.39300 1.83850 2.58903 3.19699 3.28139 3.31934 3.39766 3.51644 3.64471 4.03596 4.26221 4.47888 4.54836 4.70269 4.74652 4.78131 4.89394 4.94092 4.97365 5.00495 5.04920 5.07594 5.20112 5.20277 5.34547 5.41397 5.50995 5.56542 5.67169 5.76150 5.80798 5.86348 6.07852 6.20663 6.36339 6.54206 6.56485 6.61599 6.75239 6.82729 6.86192 6.87470 7.19774 7.26176 7.33266 7.72360 7.90384 8.00675 8.08489 8.47888 8.64886 9.28809 9.34492 10.76789 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.030403 B = 0.001768 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.744677 B =15829.822519 C =16061.972571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.064 3.936 4 C 0.056 3.944 5 N -0.529 5.529 6 C 0.015 3.985 7 C 0.044 3.956 8 C 0.123 3.877 9 N -0.709 5.709 10 C 0.511 3.489 11 O -0.515 6.515 12 C 0.508 3.492 13 O -0.539 6.539 14 N -0.574 5.574 15 C 0.111 3.889 16 C -0.121 4.121 17 C 0.247 3.753 18 O -0.580 6.580 19 C -0.538 4.538 20 H 0.068 0.932 21 C 0.071 3.929 22 N -0.892 5.892 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.271 1.271 27 C 0.093 3.907 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.411 0.589 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.380 0.620 48 H 0.270 0.730 49 H 0.091 0.909 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.796 13.937 6.613 25.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.013 4.013 4 C -0.072 4.072 5 N -0.253 5.253 6 C -0.133 4.133 7 C -0.084 4.084 8 C -0.001 4.001 9 N -0.364 5.364 10 C 0.292 3.708 11 O -0.390 6.390 12 C 0.290 3.710 13 O -0.418 6.418 14 N -0.306 5.306 15 C -0.011 4.011 16 C -0.159 4.159 17 C 0.207 3.793 18 O -0.388 6.388 19 C -0.576 4.576 20 H 0.087 0.913 21 C -0.133 4.133 22 N -0.531 5.531 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.196 1.196 27 C -0.028 4.028 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.247 0.753 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.230 0.770 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.532 13.277 6.160 26.036 hybrid contribution 1.819 1.064 0.528 2.172 sum -19.713 14.341 6.688 25.279 Atomic orbital electron populations 1.22736 0.81517 1.02824 0.99549 1.88019 1.19021 1.26961 1.95226 1.22580 0.93296 0.85454 0.99972 1.22161 0.93832 0.98317 0.92888 1.61784 1.16630 1.43898 1.03029 1.22567 1.01536 0.94923 0.94277 1.22265 0.88186 0.98795 0.99163 1.21325 0.80607 1.00097 0.98074 1.45633 1.11006 1.52693 1.27029 1.20390 0.88921 0.79002 0.82459 1.90731 1.63164 1.51768 1.33325 1.19550 0.87351 0.81012 0.83093 1.90718 1.62909 1.54435 1.33783 1.48685 1.13319 1.46466 1.22152 1.22153 0.95321 0.97243 0.86423 1.22720 0.96216 0.99132 0.97857 1.19643 0.91413 0.81806 0.86455 1.86134 1.52838 1.49414 1.50453 1.21478 0.91777 1.50474 0.93893 0.91337 1.25091 0.99539 0.93665 0.94959 1.69749 1.31021 1.48281 1.04028 0.86384 0.82603 0.78400 0.79496 1.20541 1.20925 1.19599 1.23512 0.77044 0.98374 1.03825 0.94451 0.94285 0.89588 0.93020 0.93141 0.89525 0.93097 0.90618 0.91160 0.95446 0.89661 0.93908 0.91153 0.90020 0.75346 0.91140 0.91764 0.90372 0.90501 0.77005 0.91979 0.89052 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -3.42 10.65 -35.23 -0.38 -3.80 16 3 C 0.06 0.43 6.00 37.16 0.22 0.65 16 4 C 0.06 0.38 5.34 -3.83 -0.02 0.36 16 5 N -0.53 -4.48 4.71 -242.91 -1.14 -5.62 16 6 C 0.01 0.11 9.13 60.07 0.55 0.66 16 7 C 0.04 0.37 5.07 -3.82 -0.02 0.36 16 8 C 0.12 1.35 5.60 -4.04 -0.02 1.32 16 9 N -0.71 -9.39 5.55 -60.73 -0.34 -9.73 16 10 C 0.51 8.83 7.86 -11.58 -0.09 8.74 16 11 O -0.52 -9.62 14.12 5.50 0.08 -9.54 16 12 C 0.51 10.35 7.91 -11.58 -0.09 10.26 16 13 O -0.54 -11.88 16.73 5.50 0.09 -11.79 16 14 N -0.57 -12.36 3.33 -170.98 -0.57 -12.93 16 15 C 0.11 2.19 5.49 -3.04 -0.02 2.17 16 16 C -0.12 -2.50 6.13 -24.87 -0.15 -2.65 16 17 C 0.25 6.01 0.88 -89.61 -0.08 5.93 16 18 O -0.58 -14.80 13.17 -35.23 -0.46 -15.26 16 19 C -0.54 -13.88 8.25 -34.44 -0.28 -14.17 16 20 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 21 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 22 N -0.89 -23.48 10.70 55.43 0.59 -22.88 16 23 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 C 0.09 2.23 5.40 -2.51 -0.01 2.22 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.30 6.26 -51.93 -0.33 -0.02 16 33 H 0.09 0.61 7.93 -51.93 -0.41 0.20 16 34 H 0.05 0.28 8.12 -51.93 -0.42 -0.14 16 35 H 0.08 0.59 6.47 -51.93 -0.34 0.26 16 36 H 0.07 0.46 6.21 -51.93 -0.32 0.14 16 37 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 39 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 40 H 0.07 0.78 6.55 -51.93 -0.34 0.44 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.41 4.93 7.94 -40.82 -0.32 4.61 16 43 H 0.07 1.40 7.58 -51.93 -0.39 1.01 16 44 H 0.06 1.16 7.69 -51.93 -0.40 0.76 16 45 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 46 H 0.08 1.52 8.14 -51.92 -0.42 1.09 16 47 H 0.38 9.85 7.54 45.56 0.34 10.20 16 48 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 49 H 0.09 2.42 7.31 -51.93 -0.38 2.04 16 50 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -30.59 403.99 -7.54 -38.13 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -7.48 Total: 13.32 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: 1.00 Total: 18.88 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -1.46 Total: -51.16 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.67 Total: -40.39 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.59 -7.54 -38.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332211576.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.641 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds