Wall clock time and date at job start Wed Apr 1 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00563 * 2 1 4 4 C 1.52997 * 109.47308 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46971 * 64.99723 * 4 3 2 6 6 C 1.46902 * 110.99713 * 66.04944 * 5 4 3 7 7 C 1.46904 * 110.99850 * 189.99590 * 5 4 3 8 8 C 1.53001 * 109.46979 * 170.00011 * 7 5 4 9 9 N 1.46504 * 109.46889 * 180.02562 * 8 7 5 10 10 C 1.34777 * 119.99827 * 180.02562 * 9 8 7 11 11 O 1.21345 * 120.00010 * 359.97438 * 10 9 8 12 12 C 1.49454 * 119.99788 * 179.97438 * 10 9 8 13 13 O 1.21345 * 120.00202 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99788 * 179.97438 * 12 10 9 15 15 C 1.47027 * 125.64867 * 359.95106 * 14 12 10 16 16 C 1.54367 * 107.28564 * 181.13053 * 15 14 12 17 17 C 1.55156 * 102.92264 * 22.14605 * 16 15 14 18 18 O 1.42894 * 111.00661 * 82.63741 * 17 16 15 19 19 C 1.50705 * 111.00010 * 206.45343 * 17 16 15 20 20 H 1.07993 * 120.00222 * 356.17881 * 19 17 16 21 21 C 1.37881 * 119.99392 * 175.90919 * 19 17 16 22 22 N 1.31509 * 120.00570 * 354.23595 * 21 19 17 23 23 Si 1.86801 * 119.99492 * 174.24147 * 21 19 17 24 24 H 1.48500 * 109.47445 * 94.98741 * 23 21 19 25 25 H 1.48506 * 109.47043 * 214.98367 * 23 21 19 26 26 H 1.48496 * 109.47404 * 334.97778 * 23 21 19 27 27 C 1.47424 * 125.64700 * 179.97438 * 14 12 10 28 28 H 1.09003 * 109.47052 * 300.00081 * 1 2 3 29 29 H 1.08999 * 109.47117 * 60.00121 * 1 2 3 30 30 H 1.08999 * 109.47262 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47014 * 59.99777 * 3 2 1 32 32 H 1.09001 * 109.46796 * 300.00107 * 3 2 1 33 33 H 1.09001 * 109.47103 * 304.99865 * 4 3 2 34 34 H 1.09000 * 109.47021 * 184.99824 * 4 3 2 35 35 H 1.09004 * 109.46678 * 183.95208 * 6 5 4 36 36 H 1.08998 * 109.47081 * 303.94689 * 6 5 4 37 37 H 1.08996 * 109.47463 * 63.95148 * 6 5 4 38 38 H 1.09007 * 109.46948 * 50.00338 * 7 5 4 39 39 H 1.09000 * 109.47449 * 290.00727 * 7 5 4 40 40 H 1.08995 * 109.47006 * 60.00778 * 8 7 5 41 41 H 1.09002 * 109.47174 * 300.00319 * 8 7 5 42 42 H 0.96999 * 120.00200 * 359.97438 * 9 8 7 43 43 H 1.08996 * 109.88083 * 300.51793 * 15 14 12 44 44 H 1.09004 * 109.88118 * 61.68271 * 15 14 12 45 45 H 1.08998 * 110.70797 * 263.79195 * 16 15 14 46 46 H 1.09008 * 110.75397 * 140.50586 * 16 15 14 47 47 H 0.96708 * 113.99643 * 183.17930 * 18 17 16 48 48 H 0.96998 * 120.00806 * 180.02562 * 22 21 19 49 49 H 1.09000 * 110.36750 * 36.99474 * 27 14 12 50 50 H 1.08997 * 110.36842 * 274.66920 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9778 0.5620 -1.2543 6 6 3.6969 1.4345 -2.4023 7 6 5.4036 0.2130 -1.1948 8 6 5.7685 -0.6491 -2.4050 9 7 7.1902 -0.9977 -2.3454 10 6 7.7391 -1.7570 -3.3142 11 8 7.0555 -2.1523 -4.2356 12 6 9.1895 -2.1120 -3.2537 13 8 9.8731 -1.7163 -2.3325 14 7 9.7383 -2.8718 -4.2223 15 6 9.0289 -3.4167 -5.3891 16 6 10.0494 -4.2412 -6.2025 17 6 11.1383 -4.5807 -5.1506 18 8 10.7614 -5.7180 -4.3719 19 6 12.4759 -4.8000 -5.8093 20 1 12.5587 -4.7725 -6.8858 21 6 13.5950 -5.0300 -5.0374 22 7 13.5188 -4.9460 -3.7272 23 14 15.2195 -5.4608 -5.8528 24 1 16.0282 -4.2276 -6.0273 25 1 15.9620 -6.4229 -4.9993 26 1 14.9599 -6.0746 -7.1798 27 6 11.1492 -3.2944 -4.2869 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5683 0.8427 34 1 3.9785 2.1763 0.0902 35 1 3.9698 0.9209 -3.3242 36 1 2.6346 1.6775 -2.4225 37 1 4.2780 2.3522 -2.3119 38 1 5.6036 -0.3432 -0.2789 39 1 6.0015 1.1243 -1.2043 40 1 5.5685 -0.0929 -3.3208 41 1 5.1706 -1.5605 -2.3954 42 1 7.7367 -0.6814 -1.6090 43 1 8.2124 -4.0593 -5.0597 44 1 8.6392 -2.6021 -5.9996 45 1 10.4685 -3.6447 -7.0128 46 1 9.5903 -5.1510 -6.5895 47 1 11.3880 -5.9387 -3.6692 48 1 14.3061 -5.1075 -3.1842 49 1 11.5262 -3.5118 -3.2876 50 1 11.7549 -2.5230 -4.7624 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332211576.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:41 Heat of formation + Delta-G solvation = -170.706263 kcal Electronic energy + Delta-G solvation = -30285.869453 eV Core-core repulsion = 25926.934331 eV Total energy + Delta-G solvation = -4358.935122 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81410 -40.13469 -39.42442 -38.87153 -38.00540 -36.39948 -35.60356 -34.23649 -31.95251 -31.71997 -29.77116 -29.52095 -27.85423 -27.40233 -26.65594 -25.23965 -23.66114 -22.70154 -21.93953 -21.54080 -20.83550 -19.17707 -18.73878 -18.10037 -17.50643 -17.42976 -17.33632 -17.07428 -16.69670 -16.49221 -16.27418 -16.11331 -15.78324 -15.61430 -15.15990 -14.86728 -14.79069 -14.67991 -14.61114 -14.27619 -13.95718 -13.57126 -13.38063 -13.31823 -13.08189 -12.87275 -12.82852 -12.70091 -12.60077 -12.52498 -12.39654 -12.34413 -12.23544 -12.13786 -12.09528 -11.74560 -11.19570 -10.75332 -10.62339 -10.50770 -10.36169 -10.30128 -9.63869 -9.30505 -8.24980 -6.41862 0.33519 1.23189 1.43478 1.46884 1.56881 2.11562 2.36049 2.44702 2.92097 3.00258 3.02761 3.36884 3.76481 3.77764 3.96560 4.05755 4.09993 4.15889 4.22500 4.32868 4.40113 4.43522 4.48623 4.53272 4.59551 4.62253 4.66597 4.68040 4.73921 4.81623 4.88825 4.91281 4.92942 4.98634 5.06568 5.09642 5.12235 5.16746 5.35073 5.43141 5.74765 5.94950 5.99167 6.03383 6.06321 6.37332 6.38404 6.61538 6.68043 6.91528 7.26738 7.33333 8.80241 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.030403 B = 0.001768 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.744677 B =15829.822519 C =16061.972571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.062 3.938 4 C 0.055 3.945 5 N -0.546 5.546 6 C 0.016 3.984 7 C 0.052 3.948 8 C 0.126 3.874 9 N -0.688 5.688 10 C 0.518 3.482 11 O -0.530 6.530 12 C 0.502 3.498 13 O -0.561 6.561 14 N -0.583 5.583 15 C 0.119 3.881 16 C -0.115 4.115 17 C 0.232 3.768 18 O -0.587 6.587 19 C -0.557 4.557 20 H 0.071 0.929 21 C 0.029 3.971 22 N -0.914 5.914 23 Si 0.965 3.035 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.267 1.267 27 C 0.108 3.892 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.418 0.582 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.374 0.626 48 H 0.271 0.729 49 H 0.059 0.941 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.855 15.181 6.300 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.015 4.015 4 C -0.072 4.072 5 N -0.271 5.271 6 C -0.132 4.132 7 C -0.076 4.076 8 C 0.003 3.997 9 N -0.342 5.342 10 C 0.298 3.702 11 O -0.406 6.406 12 C 0.286 3.714 13 O -0.441 6.441 14 N -0.315 5.315 15 C -0.003 4.003 16 C -0.153 4.153 17 C 0.191 3.809 18 O -0.394 6.394 19 C -0.595 4.595 20 H 0.089 0.911 21 C -0.173 4.173 22 N -0.552 5.552 23 Si 0.791 3.209 24 H -0.202 1.202 25 H -0.209 1.209 26 H -0.191 1.191 27 C -0.014 4.014 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.256 0.744 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.223 0.777 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.633 14.552 5.862 27.539 hybrid contribution 2.086 0.719 0.692 2.312 sum -20.548 15.270 6.554 26.426 Atomic orbital electron populations 1.22846 0.80348 1.03260 1.00509 1.87968 1.20520 1.28548 1.95459 1.22701 0.92995 0.84779 1.01040 1.22221 0.94171 0.98969 0.91876 1.61756 1.16306 1.44951 1.04069 1.22564 1.02154 0.94979 0.93502 1.22159 0.88779 0.98833 0.97825 1.21437 0.78517 1.00055 0.99683 1.45580 1.12064 1.50750 1.25807 1.19761 0.87227 0.79905 0.83334 1.90726 1.62815 1.52884 1.34192 1.20195 0.88828 0.80138 0.82263 1.90696 1.63922 1.55045 1.34441 1.48731 1.12520 1.47042 1.23231 1.22168 0.94623 0.97683 0.85822 1.22734 0.95272 0.99919 0.97348 1.19876 0.92486 0.81303 0.87201 1.86128 1.52728 1.50141 1.50408 1.21767 0.92755 1.50829 0.94153 0.91127 1.25807 1.02528 0.93487 0.95429 1.69859 1.31710 1.48634 1.05042 0.85430 0.78854 0.78044 0.78610 1.20224 1.20884 1.19132 1.23079 0.78488 0.98158 1.01691 0.93163 0.93603 0.89531 0.91389 0.92539 0.89998 0.91364 0.91467 0.90514 0.94483 0.89315 0.92605 0.90811 0.91229 0.74435 0.91332 0.89690 0.88869 0.89618 0.77742 0.92011 0.92288 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -6.97 10.65 -148.98 -1.59 -8.55 16 3 C 0.06 0.70 6.00 71.98 0.43 1.14 16 4 C 0.06 0.65 5.34 86.30 0.46 1.11 16 5 N -0.55 -8.28 4.71 -922.43 -4.35 -12.62 16 6 C 0.02 0.20 9.13 127.69 1.17 1.37 16 7 C 0.05 0.79 5.07 86.30 0.44 1.23 16 8 C 0.13 2.58 5.60 86.38 0.48 3.06 16 9 N -0.69 -17.31 5.55 -464.41 -2.58 -19.88 16 10 C 0.52 17.39 7.86 87.27 0.69 18.08 16 11 O -0.53 -19.11 14.12 -3.23 -0.05 -19.16 16 12 C 0.50 20.42 7.91 87.27 0.69 21.12 16 13 O -0.56 -24.88 16.73 -3.23 -0.05 -24.94 16 14 N -0.58 -25.12 3.33 -813.22 -2.70 -27.82 16 15 C 0.12 4.55 5.49 86.74 0.48 5.03 16 16 C -0.11 -4.61 6.13 31.80 0.19 -4.42 16 17 C 0.23 11.32 0.88 -10.14 -0.01 11.31 16 18 O -0.59 -30.37 13.17 -148.98 -1.96 -32.33 16 19 C -0.56 -28.75 8.25 25.60 0.21 -28.54 16 20 H 0.07 3.53 7.79 -2.91 -0.02 3.51 16 21 C 0.03 1.48 5.27 84.66 0.45 1.93 16 22 N -0.91 -48.88 10.70 21.45 0.23 -48.65 16 23 Si 0.97 41.21 29.54 68.60 2.03 43.24 16 24 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 27 C 0.11 5.27 5.40 86.86 0.47 5.74 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.56 6.26 -2.39 -0.01 0.55 16 33 H 0.08 1.03 7.93 -2.39 -0.02 1.02 16 34 H 0.07 0.57 8.12 -2.39 -0.02 0.55 16 35 H 0.07 0.96 6.47 -2.38 -0.02 0.94 16 36 H 0.08 0.86 6.21 -2.39 -0.01 0.85 16 37 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.09 1.28 7.93 -2.38 -0.02 1.27 16 39 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 40 H 0.07 1.51 6.55 -2.39 -0.02 1.50 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.42 9.44 7.94 -92.71 -0.74 8.70 16 43 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 44 H 0.08 2.91 7.69 -2.39 -0.02 2.89 16 45 H 0.09 3.43 8.03 -2.39 -0.02 3.41 16 46 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 47 H 0.37 19.97 7.54 -74.05 -0.56 19.41 16 48 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 49 H 0.06 3.24 7.31 -2.39 -0.02 3.23 16 50 H 0.06 2.81 8.03 -2.39 -0.02 2.79 16 Total: -1.00 -65.22 403.99 -3.96 -69.18 By element: Atomic # 1 Polarization: 42.19 SS G_CDS: -0.33 Total: 41.86 kcal Atomic # 6 Polarization: 32.28 SS G_CDS: 7.39 Total: 39.67 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -9.40 Total: -108.98 kcal Atomic # 8 Polarization: -81.33 SS G_CDS: -3.65 Total: -84.98 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -65.22 -3.96 -69.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332211576.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.524 kcal (2) G-P(sol) polarization free energy of solvation -65.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds