Wall clock time and date at job start Wed Apr 1 2020 02:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46493 * 119.99837 * 2 1 4 4 C 1.53005 * 109.47065 * 269.99576 * 3 2 1 5 5 H 1.09008 * 109.46736 * 60.00746 * 4 3 2 6 6 O 1.42896 * 109.47709 * 300.00449 * 4 3 2 7 7 C 1.52996 * 109.47225 * 179.97438 * 4 3 2 8 8 N 1.46894 * 109.47350 * 185.00398 * 7 4 3 9 9 C 1.46908 * 111.00217 * 180.02562 * 8 7 4 10 10 C 1.50706 * 109.47078 * 179.97438 * 9 8 7 11 11 O 1.21296 * 119.99710 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99924 * 179.97438 * 10 9 8 13 13 C 1.37099 * 120.00089 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99675 * 0.02562 * 13 12 10 15 15 C 1.38944 * 120.00050 * 180.02562 * 13 12 10 16 16 N 1.31410 * 120.00275 * 179.97438 * 15 13 12 17 17 Si 1.86810 * 119.99991 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46785 * 90.00232 * 17 15 13 19 19 H 1.48499 * 109.47091 * 210.00041 * 17 15 13 20 20 H 1.48500 * 109.47275 * 330.00346 * 17 15 13 21 21 C 1.34775 * 119.99980 * 180.02562 * 2 1 3 22 22 O 1.21287 * 120.00198 * 180.02562 * 21 2 1 23 23 C 1.50703 * 120.00358 * 359.97438 * 21 2 1 24 24 C 1.52996 * 109.47317 * 180.02562 * 23 21 2 25 25 H 1.08999 * 110.33258 * 52.74904 * 24 23 21 26 26 C 1.54477 * 110.37090 * 175.00290 * 24 23 21 27 27 C 1.54507 * 104.06510 * 142.92040 * 26 24 23 28 28 C 1.54483 * 104.06211 * 359.97438 * 27 26 24 29 29 O 1.44428 * 104.89902 * 335.96812 * 28 27 26 30 30 H 1.09003 * 109.47315 * 269.99960 * 1 2 3 31 31 H 1.08999 * 109.47678 * 30.00417 * 1 2 3 32 32 H 1.09002 * 109.47464 * 150.00043 * 1 2 3 33 33 H 1.08994 * 109.47475 * 30.00033 * 3 2 1 34 34 H 1.08998 * 109.47257 * 150.00402 * 3 2 1 35 35 H 0.96705 * 113.99540 * 300.00215 * 6 4 3 36 36 H 1.09007 * 109.47502 * 305.00487 * 7 4 3 37 37 H 1.08998 * 109.47130 * 65.00422 * 7 4 3 38 38 H 1.00907 * 111.00223 * 56.05104 * 8 7 4 39 39 H 1.09000 * 109.46745 * 300.00127 * 9 8 7 40 40 H 1.08997 * 109.47093 * 60.00029 * 9 8 7 41 41 H 0.96999 * 119.99953 * 0.02562 * 12 10 9 42 42 H 0.97004 * 120.00191 * 179.97438 * 16 15 13 43 43 H 1.09006 * 109.46527 * 60.00272 * 23 21 2 44 44 H 1.08996 * 109.47292 * 300.00827 * 23 21 2 45 45 H 1.09000 * 110.51486 * 24.27482 * 26 24 23 46 46 H 1.09000 * 110.62726 * 261.62101 * 26 24 23 47 47 H 1.09005 * 110.51421 * 241.35469 * 27 26 24 48 48 H 1.09004 * 110.63217 * 118.69765 * 27 26 24 49 49 H 1.09002 * 110.37322 * 94.85326 * 28 27 26 50 50 H 1.08999 * 110.37312 * 217.08002 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 1.5000 1.8407 -1.9564 6 8 3.2247 0.7145 -2.1162 7 6 3.2169 3.0357 -1.4426 8 7 3.3571 3.5200 -2.8223 9 6 4.0884 4.7936 -2.8614 10 6 4.2128 5.2577 -4.2898 11 8 3.7385 4.5932 -5.1869 12 7 4.8502 6.4116 -4.5703 13 6 4.9629 6.8341 -5.8697 14 1 4.5406 6.2425 -6.6684 15 6 5.6205 8.0235 -6.1589 16 7 5.7290 8.4283 -7.4044 17 14 6.3503 9.0472 -4.7772 18 1 7.7517 8.6210 -4.5325 19 1 6.3288 10.4819 -5.1596 20 1 5.5507 8.8522 -3.5411 21 6 2.1388 -1.1672 -0.0005 22 8 3.3517 -1.1672 -0.0001 23 6 1.3854 -2.4724 -0.0005 24 6 2.3796 -3.6352 -0.0005 25 1 3.0960 -3.5210 0.8130 26 6 1.6326 -4.9814 0.1256 27 6 2.4347 -5.9423 -0.7802 28 6 3.5713 -5.0628 -1.3470 29 8 3.0678 -3.7112 -1.2713 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1498 1.1384 0.5138 35 1 4.0872 0.5460 -1.7126 36 1 2.6691 3.7711 -0.8533 37 1 4.2051 2.8851 -1.0082 38 1 2.4563 3.6062 -3.2687 39 1 3.5471 5.5413 -2.2818 40 1 5.0827 4.6548 -2.4370 41 1 5.2291 6.9431 -3.8529 42 1 6.1877 9.2588 -7.6063 43 1 0.7584 -2.5299 -0.8904 44 1 0.7590 -2.5303 0.8896 45 1 0.6078 -4.8847 -0.2331 46 1 1.6434 -5.3314 1.1579 47 1 1.8066 -6.3206 -1.5867 48 1 2.8444 -6.7674 -0.1973 49 1 4.4706 -5.1673 -0.7400 50 1 3.7796 -5.3327 -2.3823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332487550.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:45 Heat of formation + Delta-G solvation = -189.835408 kcal Electronic energy + Delta-G solvation = -30003.295013 eV Core-core repulsion = 25643.530389 eV Total energy + Delta-G solvation = -4359.764624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.18690 -40.34812 -39.96397 -38.58131 -36.45255 -36.09054 -35.60062 -33.76371 -33.39786 -32.64696 -31.42286 -29.12907 -27.78426 -27.41732 -26.07010 -24.50090 -23.13585 -22.58061 -21.83997 -21.30565 -20.29697 -20.15396 -18.26663 -18.09543 -17.50016 -17.40116 -17.15504 -16.80773 -16.72669 -16.55183 -16.28190 -16.08290 -15.94336 -15.46163 -15.11260 -14.95901 -14.66252 -14.48058 -14.44799 -14.21597 -13.92058 -13.72481 -13.36869 -13.27152 -13.17517 -13.00211 -12.93125 -12.77815 -12.59718 -12.57332 -12.42397 -12.12434 -12.04798 -11.99833 -11.98311 -11.53209 -11.46115 -11.16874 -10.69624 -10.67003 -10.44614 -10.26458 -9.48869 -9.27392 -8.42454 -6.03903 1.29064 1.35497 1.44139 1.74539 1.93819 2.08985 2.22373 2.71298 3.01239 3.13472 3.32413 3.58165 3.65694 3.70344 3.83874 3.91137 4.06079 4.11896 4.14490 4.16944 4.21733 4.26646 4.38104 4.39260 4.46211 4.51301 4.52725 4.60134 4.64722 4.68610 4.72893 4.81030 4.85991 4.93266 4.97461 4.99389 5.11729 5.14623 5.22447 5.50695 5.56370 5.88856 5.98679 6.04001 6.35227 6.46024 6.58569 6.86488 6.87574 7.31628 7.37896 7.95220 8.75353 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021583 B = 0.001720 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.009410 B =16270.914759 C =16928.284337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.615 5.615 3 C 0.090 3.910 4 C 0.097 3.903 5 H 0.090 0.910 6 O -0.564 6.564 7 C 0.035 3.965 8 N -0.685 5.685 9 C 0.064 3.936 10 C 0.446 3.554 11 O -0.616 6.616 12 N -0.590 5.590 13 C -0.332 4.332 14 H 0.053 0.947 15 C -0.016 4.016 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.230 1.230 21 C 0.509 3.491 22 O -0.571 6.571 23 C -0.129 4.129 24 C 0.082 3.918 25 H 0.059 0.941 26 C -0.144 4.144 27 C -0.151 4.151 28 C 0.032 3.968 29 O -0.396 6.396 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.374 0.626 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.343 0.657 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.390 0.610 42 H 0.280 0.720 43 H 0.108 0.892 44 H 0.140 0.860 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.056 0.944 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.137 -23.111 28.845 39.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.348 5.348 3 C -0.034 4.034 4 C 0.036 3.964 5 H 0.108 0.892 6 O -0.370 6.370 7 C -0.094 4.094 8 N -0.318 5.318 9 C -0.068 4.068 10 C 0.234 3.766 11 O -0.501 6.501 12 N -0.231 5.231 13 C -0.461 4.461 14 H 0.071 0.929 15 C -0.214 4.214 16 N -0.575 5.575 17 Si 0.787 3.213 18 H -0.183 1.183 19 H -0.198 1.198 20 H -0.153 1.153 21 C 0.298 3.702 22 O -0.450 6.450 23 C -0.168 4.168 24 C 0.024 3.976 25 H 0.077 0.923 26 C -0.181 4.181 27 C -0.188 4.188 28 C -0.045 4.045 29 O -0.316 6.316 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.222 0.778 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.161 0.839 39 H 0.099 0.901 40 H 0.129 0.871 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.126 0.874 44 H 0.158 0.842 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.099 0.901 48 H 0.110 0.890 49 H 0.074 0.926 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.720 -23.634 27.431 38.377 hybrid contribution 0.570 1.419 0.354 1.570 sum -12.151 -22.214 27.785 37.591 Atomic orbital electron populations 1.22089 0.77204 1.04509 1.03474 1.47827 1.08278 1.05237 1.73452 1.22112 0.98941 0.86296 0.96080 1.22353 0.94495 0.86471 0.93087 0.89185 1.86586 1.33431 1.59484 1.57459 1.22676 1.01604 0.96625 0.88525 1.59901 1.25429 1.28533 1.17938 1.21633 1.01927 0.91868 0.91400 1.21056 0.81643 0.81530 0.92384 1.90555 1.52394 1.56902 1.50223 1.42013 1.52361 1.21530 1.07243 1.19015 1.36177 1.06774 0.84144 0.92924 1.26157 0.97184 0.97916 1.00171 1.69811 1.43233 1.23863 1.20579 0.85327 0.79658 0.77797 0.78470 1.18276 1.19821 1.15272 1.21068 0.87868 0.86426 0.74808 1.90659 1.15902 1.87766 1.50646 1.21866 0.98521 0.89774 1.06666 1.22895 0.93051 0.95078 0.86601 0.92340 1.22999 1.00419 0.92875 1.01835 1.22939 0.97095 0.98688 1.00113 1.23547 0.97008 0.81766 1.02182 1.89309 1.73586 1.30709 1.37981 0.90092 0.90283 0.89934 0.86543 0.90567 0.77788 0.91559 0.90093 0.83874 0.90069 0.87118 0.77392 0.91093 0.87397 0.84224 0.89063 0.88504 0.90085 0.88973 0.92618 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 10.24 127.77 1.31 1.80 16 2 N -0.62 -9.50 2.83 -846.77 -2.39 -11.90 16 3 C 0.09 1.39 5.15 86.38 0.44 1.83 16 4 C 0.10 2.07 3.41 30.59 0.10 2.18 16 5 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 6 O -0.56 -17.36 12.09 -140.63 -1.70 -19.06 16 7 C 0.04 0.74 5.32 86.30 0.46 1.20 16 8 N -0.69 -21.57 6.07 -517.92 -3.15 -24.72 16 9 C 0.06 2.03 6.17 85.56 0.53 2.56 16 10 C 0.45 21.07 7.82 87.66 0.69 21.76 16 11 O -0.62 -36.12 15.78 -3.08 -0.05 -36.17 16 12 N -0.59 -28.71 5.09 -306.98 -1.56 -30.27 16 13 C -0.33 -20.04 10.16 84.04 0.85 -19.19 16 14 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 15 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 16 N -0.93 -57.41 13.96 21.66 0.30 -57.11 16 17 Si 0.97 39.40 27.74 68.60 1.90 41.30 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 21 C 0.51 10.53 7.11 87.66 0.62 11.15 16 22 O -0.57 -16.86 13.98 14.40 0.20 -16.65 16 23 C -0.13 -1.70 3.88 29.85 0.12 -1.59 16 24 C 0.08 1.37 2.74 31.09 0.09 1.45 16 25 H 0.06 1.13 7.90 -2.39 -0.02 1.11 16 26 C -0.14 -1.31 6.63 31.61 0.21 -1.10 16 27 C -0.15 -1.56 7.09 31.61 0.22 -1.34 16 28 C 0.03 0.55 7.62 72.49 0.55 1.10 16 29 O -0.40 -9.81 10.95 -142.78 -1.56 -11.38 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.20 16 31 H 0.08 0.49 8.07 -2.39 -0.02 0.47 16 32 H 0.08 0.44 6.44 -2.39 -0.02 0.42 16 33 H 0.12 1.02 8.07 -2.39 -0.02 1.00 16 34 H 0.08 1.39 7.42 -2.39 -0.02 1.38 16 35 H 0.37 11.22 8.45 -74.05 -0.63 10.59 16 36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.34 11.54 8.43 -89.69 -0.76 10.78 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.39 15.59 5.76 -92.71 -0.53 15.06 16 42 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 43 H 0.11 1.31 7.40 -2.38 -0.02 1.30 16 44 H 0.14 0.72 8.11 -2.39 -0.02 0.70 16 45 H 0.09 0.58 7.87 -2.39 -0.02 0.56 16 46 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 49 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -92.96 407.27 -2.35 -95.32 By element: Atomic # 1 Polarization: 50.25 SS G_CDS: -1.01 Total: 49.25 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 6.66 Total: 21.38 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -6.80 Total: -123.99 kcal Atomic # 8 Polarization: -80.14 SS G_CDS: -3.11 Total: -83.26 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.90 Total: 41.30 kcal Total: -92.96 -2.35 -95.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332487550.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.519 kcal (2) G-P(sol) polarization free energy of solvation -92.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds