Wall clock time and date at job start Wed Apr 1 2020 01:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99726 * 2 1 4 4 N 1.46497 * 109.46739 * 125.70154 * 3 2 1 5 5 C 1.36740 * 127.13595 * 275.28050 * 4 3 2 6 6 C 1.50700 * 126.34784 * 359.96936 * 5 4 3 7 7 C 1.50696 * 109.47068 * 89.99822 * 6 5 4 8 8 N 1.33240 * 125.52591 * 269.69164 * 7 6 5 9 9 C 1.30836 * 109.83082 * 179.85973 * 8 7 6 10 10 N 1.34432 * 108.07319 * 0.40273 * 9 8 7 11 11 H 0.96999 * 126.82066 * 179.78926 * 10 9 8 12 12 N 1.30716 * 125.52613 * 90.00592 * 7 6 5 13 13 N 1.30303 * 107.30383 * 179.83640 * 5 4 3 14 14 N 1.28525 * 110.05010 * 0.43994 * 13 5 4 15 15 C 1.31208 * 109.86481 * 359.72634 * 14 13 5 16 16 N 1.38581 * 126.47576 * 179.97438 * 15 14 13 17 17 C 1.46897 * 111.00531 * 108.74989 * 16 15 14 18 18 C 1.50701 * 109.47109 * 302.88989 * 17 16 15 19 19 H 1.08006 * 119.99664 * 0.41235 * 18 17 16 20 20 C 1.37873 * 120.00119 * 180.40074 * 18 17 16 21 21 N 1.31515 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99926 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47070 * 60.00516 * 22 20 18 24 24 H 1.48495 * 109.47102 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47428 * 300.00392 * 22 20 18 26 26 C 1.46899 * 110.99646 * 344.79386 * 16 15 14 27 27 C 1.52999 * 109.47012 * 192.26468 * 26 16 15 28 28 C 1.53002 * 117.49951 * 244.11557 * 27 26 16 29 29 C 1.53001 * 117.49804 * 175.46048 * 27 26 16 30 30 H 1.07998 * 119.99462 * 179.71974 * 1 2 3 31 31 H 1.08002 * 119.99692 * 359.72216 * 1 2 3 32 32 H 1.07995 * 120.00203 * 180.28553 * 2 1 3 33 33 H 1.09001 * 109.47073 * 245.70119 * 3 2 1 34 34 H 1.09000 * 109.47451 * 5.70371 * 3 2 1 35 35 H 1.09007 * 109.47317 * 209.99970 * 6 5 4 36 36 H 1.09003 * 109.47091 * 329.99418 * 6 5 4 37 37 H 1.07993 * 125.96573 * 180.19799 * 9 8 7 38 38 H 1.08998 * 109.47134 * 62.89456 * 17 16 15 39 39 H 1.08999 * 109.47535 * 182.89379 * 17 16 15 40 40 H 0.96988 * 120.00256 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.47418 * 312.26072 * 26 16 15 42 42 H 1.08999 * 109.47085 * 72.26514 * 26 16 15 43 43 H 1.08998 * 115.55662 * 29.78441 * 27 26 16 44 44 H 1.09000 * 117.49567 * 0.02562 * 28 27 26 45 45 H 1.08998 * 117.50347 * 145.01493 * 28 27 26 46 46 H 1.09008 * 117.49613 * 214.97908 * 29 27 26 47 47 H 1.09000 * 117.50117 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0057 1.3250 1.1216 5 6 2.7428 1.6853 2.4143 6 6 1.4153 2.1427 2.9617 7 6 0.6355 0.9494 3.4505 8 7 -0.2136 0.2274 2.7203 9 6 -0.7168 -0.7362 3.4484 10 7 -0.1955 -0.6413 4.6838 11 1 -0.3846 -1.2180 5.4405 12 7 0.6779 0.4584 4.6612 13 7 3.8521 1.5570 3.0856 14 7 4.7929 1.1522 2.3091 15 6 4.3290 0.9937 1.0920 16 7 5.0475 0.5701 -0.0148 17 6 4.6557 -0.7899 -0.4079 18 6 4.8547 -1.7263 0.7560 19 1 5.2280 -1.3475 1.6960 20 6 4.5600 -3.0664 0.6209 21 7 4.1057 -3.5277 -0.5238 22 14 4.8061 -4.2268 2.0639 23 1 3.9607 -3.7867 3.2028 24 1 4.4199 -5.6036 1.6634 25 1 6.2336 -4.2128 2.4727 26 6 6.4931 0.6505 0.2338 27 6 7.2479 0.4741 -1.0853 28 6 8.1473 -0.7557 -1.2256 29 6 8.7694 0.6324 -1.0552 30 1 -0.5399 -0.9353 -0.0046 31 1 -0.5400 0.9353 0.0045 32 1 1.8500 -0.9352 -0.0047 33 1 2.6114 1.4084 -0.9366 34 1 1.3596 2.1311 0.1021 35 1 1.5817 2.8320 3.7896 36 1 0.8528 2.6474 2.1762 37 1 -1.4294 -1.4764 3.1159 38 1 3.6064 -0.7948 -0.7030 39 1 5.2704 -1.1171 -1.2465 40 1 3.8988 -4.4705 -0.6189 41 1 6.7345 1.6228 0.6632 42 1 6.7866 -0.1366 0.9284 43 1 6.7237 0.8184 -1.9767 44 1 8.2009 -1.4393 -0.3782 45 1 8.2149 -1.2203 -2.2093 46 1 9.2461 1.0807 -1.9270 47 1 9.2326 0.8626 -0.0957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338870902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:03 Heat of formation + Delta-G solvation = 230.457585 kcal Electronic energy + Delta-G solvation = -31403.786540 eV Core-core repulsion = 27434.141610 eV Total energy + Delta-G solvation = -3969.644930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.31969 -41.89671 -37.83591 -35.75518 -35.40983 -33.62499 -32.55737 -32.15426 -31.59505 -30.04491 -27.69027 -27.04512 -26.19864 -25.23240 -22.86699 -22.54595 -21.83052 -21.32759 -20.56090 -20.14493 -19.29561 -19.04730 -18.27164 -16.90961 -16.33774 -15.87374 -15.58712 -15.34140 -15.22239 -14.86943 -14.42117 -14.29494 -13.93741 -13.74267 -13.43800 -13.32061 -12.85019 -12.59960 -12.44582 -12.03883 -11.83378 -11.80830 -11.32156 -11.25025 -11.01424 -10.94727 -10.87906 -10.71520 -10.46930 -10.24641 -10.05290 -10.04442 -9.98140 -9.80837 -9.67293 -9.56092 -9.39858 -9.26547 -8.81298 -8.70565 -8.50045 -7.37432 -6.12786 -4.17909 1.66172 2.33358 2.62400 2.74921 2.96122 3.25826 3.28177 3.30904 3.36226 3.63413 4.21499 4.29862 4.37101 4.64753 4.69598 4.82600 4.98788 5.08615 5.21308 5.28164 5.34776 5.38184 5.46317 5.56151 5.58821 5.68506 5.87661 5.93461 6.02259 6.09625 6.18471 6.24944 6.35444 6.38831 6.42214 6.46625 6.50195 6.66994 6.74108 6.92471 7.04705 7.04733 7.16597 7.17768 7.37703 7.38704 7.67776 7.83738 8.08002 8.13124 8.22696 8.90104 9.48195 9.55166 10.93600 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.004792 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.288627 B = 5841.149372 C = 6895.577060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.184 4.184 3 C 0.150 3.850 4 N -0.463 5.463 5 C 0.151 3.849 6 C 0.074 3.926 7 C 0.234 3.766 8 N -0.521 5.521 9 C 0.257 3.743 10 N -0.486 5.486 11 H 0.439 0.561 12 N -0.297 5.297 13 N -0.275 5.275 14 N -0.338 5.338 15 C 0.417 3.583 16 N -0.467 5.467 17 C 0.189 3.811 18 C -0.544 4.544 19 H 0.064 0.936 20 C 0.072 3.928 21 N -0.889 5.889 22 Si 0.886 3.114 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.109 3.891 27 C -0.134 4.134 28 C -0.169 4.169 29 C -0.186 4.186 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.218 0.782 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.262 0.738 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.304 7.953 1.038 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.203 4.203 3 C 0.027 3.973 4 N -0.157 5.157 5 C -0.117 4.117 6 C 0.032 3.968 7 C -0.050 4.050 8 N -0.248 5.248 9 C -0.042 4.042 10 N -0.204 5.204 11 H 0.284 0.716 12 N -0.126 5.126 13 N -0.115 5.115 14 N -0.182 5.182 15 C 0.061 3.939 16 N -0.191 5.191 17 C 0.066 3.934 18 C -0.583 4.583 19 H 0.082 0.918 20 C -0.131 4.131 21 N -0.528 5.528 22 Si 0.714 3.286 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.018 4.018 27 C -0.153 4.153 28 C -0.206 4.206 29 C -0.224 4.224 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.142 0.858 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.234 0.766 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.115 0.885 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.117 8.513 1.850 11.907 hybrid contribution -0.977 -2.349 0.646 2.625 sum -9.094 6.164 2.497 11.266 Atomic orbital electron populations 1.23425 0.94991 1.00933 0.97145 1.23103 0.96249 0.98272 1.02701 1.20794 0.90983 0.97134 0.88374 1.45962 1.09180 1.50875 1.09646 1.23684 0.97654 1.08557 0.81847 1.17920 0.86526 0.91040 1.01304 1.23822 0.95544 0.97893 0.87776 1.70463 1.14073 1.07478 1.32825 1.26041 0.97740 0.98087 0.82366 1.48135 1.34188 1.25404 1.12709 0.71582 1.78066 1.12186 1.00802 1.21568 1.73837 0.96333 1.15752 1.25566 1.74617 1.23324 1.22693 0.97613 1.22473 0.82104 0.97559 0.91787 1.59291 1.05320 1.28487 1.25959 1.20082 0.97593 0.79003 0.96769 1.21703 1.44671 0.93462 0.98504 0.91756 1.24814 0.94798 0.97974 0.95488 1.69915 1.44325 1.14734 1.23807 0.86734 0.79019 0.79769 0.83051 1.20682 1.21249 1.19982 1.21395 0.84125 1.01605 0.94688 1.22122 0.91077 1.02616 0.99477 1.22976 1.03830 0.90831 1.02978 1.22944 0.95741 1.01306 1.02403 0.89007 0.89170 0.85775 0.88123 0.89636 0.86653 0.87843 0.76556 0.94254 0.93063 0.92805 0.91432 0.91678 0.87740 0.88477 0.89410 0.89415 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 11.80 29.01 0.34 -1.38 16 2 C -0.18 -3.09 9.05 -36.02 -0.33 -3.41 16 3 C 0.15 2.35 5.82 -5.19 -0.03 2.32 16 4 N -0.46 -8.84 2.79 -115.36 -0.32 -9.17 16 5 C 0.15 2.85 7.30 -154.01 -1.12 1.73 16 6 C 0.07 1.06 6.22 -29.04 -0.18 0.88 16 7 C 0.23 3.61 7.38 -156.85 -1.16 2.45 16 8 N -0.52 -7.27 8.44 -11.98 -0.10 -7.37 16 9 C 0.26 2.85 13.13 -90.65 -1.19 1.66 16 10 N -0.49 -5.70 7.45 29.53 0.22 -5.48 16 11 H 0.44 3.50 8.96 -182.33 -1.63 1.87 16 12 N -0.30 -4.72 12.80 32.42 0.41 -4.30 16 13 N -0.27 -6.14 12.18 32.99 0.40 -5.74 16 14 N -0.34 -8.02 11.01 30.31 0.33 -7.69 16 15 C 0.42 9.18 5.70 -318.88 -1.82 7.36 16 16 N -0.47 -9.98 4.69 -175.89 -0.83 -10.80 16 17 C 0.19 4.57 4.94 -4.98 -0.02 4.54 16 18 C -0.54 -14.79 7.61 -34.44 -0.26 -15.05 16 19 H 0.06 1.89 6.43 -52.48 -0.34 1.55 16 20 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 21 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 22 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 23 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.11 2.20 4.54 -3.83 -0.02 2.18 16 27 C -0.13 -2.33 4.82 -90.62 -0.44 -2.76 16 28 C -0.17 -2.86 10.18 -26.70 -0.27 -3.13 16 29 C -0.19 -2.72 10.25 -26.70 -0.27 -3.00 16 30 H 0.09 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.09 1.05 7.84 -52.49 -0.41 0.64 16 32 H 0.12 2.71 6.60 -52.49 -0.35 2.36 16 33 H 0.10 1.58 8.10 -51.93 -0.42 1.16 16 34 H 0.09 1.06 7.07 -51.93 -0.37 0.69 16 35 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.10 1.18 7.39 -51.93 -0.38 0.79 16 37 H 0.22 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.04 0.99 5.23 -51.93 -0.27 0.72 16 39 H 0.05 1.31 7.18 -51.93 -0.37 0.93 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.07 1.32 7.90 -51.93 -0.41 0.91 16 42 H 0.06 1.49 6.47 -51.93 -0.34 1.15 16 43 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 44 H 0.10 1.81 8.03 -51.93 -0.42 1.39 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 47 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -34.84 390.04 -12.95 -47.79 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.80 Total: 7.59 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -6.87 Total: -3.72 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: 0.86 Total: -74.72 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.84 -12.95 -47.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338870902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 278.251 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 243.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 230.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds