Wall clock time and date at job start Wed Apr 1 2020 01:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99726 * 2 1 4 4 N 1.46497 * 109.46739 * 125.70154 * 3 2 1 5 5 C 1.36740 * 127.13595 * 275.28050 * 4 3 2 6 6 C 1.50700 * 126.34784 * 359.96936 * 5 4 3 7 7 C 1.50696 * 109.47068 * 89.99822 * 6 5 4 8 8 N 1.33240 * 125.52591 * 269.69164 * 7 6 5 9 9 C 1.30836 * 109.83082 * 179.85973 * 8 7 6 10 10 N 1.34432 * 108.07319 * 0.40273 * 9 8 7 11 11 H 0.96999 * 126.82066 * 179.78926 * 10 9 8 12 12 N 1.30716 * 125.52613 * 90.00592 * 7 6 5 13 13 N 1.30303 * 107.30383 * 179.83640 * 5 4 3 14 14 N 1.28525 * 110.05010 * 0.43994 * 13 5 4 15 15 C 1.31208 * 109.86481 * 359.72634 * 14 13 5 16 16 N 1.38581 * 126.47576 * 179.97438 * 15 14 13 17 17 C 1.46897 * 111.00531 * 108.74989 * 16 15 14 18 18 C 1.50701 * 109.47109 * 302.88989 * 17 16 15 19 19 H 1.08006 * 119.99664 * 0.41235 * 18 17 16 20 20 C 1.37873 * 120.00119 * 180.40074 * 18 17 16 21 21 N 1.31515 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99926 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47070 * 60.00516 * 22 20 18 24 24 H 1.48495 * 109.47102 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47428 * 300.00392 * 22 20 18 26 26 C 1.46899 * 110.99646 * 344.79386 * 16 15 14 27 27 C 1.52999 * 109.47012 * 192.26468 * 26 16 15 28 28 C 1.53002 * 117.49951 * 244.11557 * 27 26 16 29 29 C 1.53001 * 117.49804 * 175.46048 * 27 26 16 30 30 H 1.07998 * 119.99462 * 179.71974 * 1 2 3 31 31 H 1.08002 * 119.99692 * 359.72216 * 1 2 3 32 32 H 1.07995 * 120.00203 * 180.28553 * 2 1 3 33 33 H 1.09001 * 109.47073 * 245.70119 * 3 2 1 34 34 H 1.09000 * 109.47451 * 5.70371 * 3 2 1 35 35 H 1.09007 * 109.47317 * 209.99970 * 6 5 4 36 36 H 1.09003 * 109.47091 * 329.99418 * 6 5 4 37 37 H 1.07993 * 125.96573 * 180.19799 * 9 8 7 38 38 H 1.08998 * 109.47134 * 62.89456 * 17 16 15 39 39 H 1.08999 * 109.47535 * 182.89379 * 17 16 15 40 40 H 0.96988 * 120.00256 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.47418 * 312.26072 * 26 16 15 42 42 H 1.08999 * 109.47085 * 72.26514 * 26 16 15 43 43 H 1.08998 * 115.55662 * 29.78441 * 27 26 16 44 44 H 1.09000 * 117.49567 * 0.02562 * 28 27 26 45 45 H 1.08998 * 117.50347 * 145.01493 * 28 27 26 46 46 H 1.09008 * 117.49613 * 214.97908 * 29 27 26 47 47 H 1.09000 * 117.50117 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0057 1.3250 1.1216 5 6 2.7428 1.6853 2.4143 6 6 1.4153 2.1427 2.9617 7 6 0.6355 0.9494 3.4505 8 7 -0.2136 0.2274 2.7203 9 6 -0.7168 -0.7362 3.4484 10 7 -0.1955 -0.6413 4.6838 11 1 -0.3846 -1.2180 5.4405 12 7 0.6779 0.4584 4.6612 13 7 3.8521 1.5570 3.0856 14 7 4.7929 1.1522 2.3091 15 6 4.3290 0.9937 1.0920 16 7 5.0475 0.5701 -0.0148 17 6 4.6557 -0.7899 -0.4079 18 6 4.8547 -1.7263 0.7560 19 1 5.2280 -1.3475 1.6960 20 6 4.5600 -3.0664 0.6209 21 7 4.1057 -3.5277 -0.5238 22 14 4.8061 -4.2268 2.0639 23 1 3.9607 -3.7867 3.2028 24 1 4.4199 -5.6036 1.6634 25 1 6.2336 -4.2128 2.4727 26 6 6.4931 0.6505 0.2338 27 6 7.2479 0.4741 -1.0853 28 6 8.1473 -0.7557 -1.2256 29 6 8.7694 0.6324 -1.0552 30 1 -0.5399 -0.9353 -0.0046 31 1 -0.5400 0.9353 0.0045 32 1 1.8500 -0.9352 -0.0047 33 1 2.6114 1.4084 -0.9366 34 1 1.3596 2.1311 0.1021 35 1 1.5817 2.8320 3.7896 36 1 0.8528 2.6474 2.1762 37 1 -1.4294 -1.4764 3.1159 38 1 3.6064 -0.7948 -0.7030 39 1 5.2704 -1.1171 -1.2465 40 1 3.8988 -4.4705 -0.6189 41 1 6.7345 1.6228 0.6632 42 1 6.7866 -0.1366 0.9284 43 1 6.7237 0.8184 -1.9767 44 1 8.2009 -1.4393 -0.3782 45 1 8.2149 -1.2203 -2.2093 46 1 9.2461 1.0807 -1.9270 47 1 9.2326 0.8626 -0.0957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338870902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:02 Heat of formation + Delta-G solvation = 210.782126 kcal Electronic energy + Delta-G solvation = -31404.639732 eV Core-core repulsion = 27434.141610 eV Total energy + Delta-G solvation = -3970.498122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.84675 -42.94770 -39.41869 -37.21183 -36.83920 -34.89364 -34.50846 -33.46810 -32.71094 -31.33014 -29.55048 -28.50225 -27.52453 -27.01029 -24.55493 -23.69241 -23.13804 -22.69099 -22.03050 -21.38986 -20.77394 -20.40010 -19.22644 -18.77023 -17.99410 -17.47088 -17.10777 -16.73951 -16.50222 -16.22473 -15.95823 -15.64342 -15.35980 -15.13615 -14.75189 -14.62204 -14.54574 -14.12897 -13.78869 -13.45754 -13.18889 -13.18220 -13.06064 -13.00498 -12.66230 -12.52208 -12.36008 -12.30754 -12.18376 -12.04654 -11.93143 -11.30066 -11.18020 -11.10589 -11.04144 -10.88577 -10.73599 -10.72212 -10.64709 -10.42949 -9.98334 -9.13846 -8.26519 -6.36751 0.61900 0.92682 1.19950 1.21501 1.30502 1.31647 1.78970 1.82158 1.96692 2.13941 2.27164 2.92429 3.03310 3.15406 3.26054 3.50633 3.68680 3.85503 3.97259 4.05537 4.07762 4.13883 4.19573 4.29565 4.30988 4.40820 4.55108 4.59712 4.67605 4.76495 4.83733 4.93136 4.98707 5.09300 5.17227 5.19572 5.22630 5.28146 5.29134 5.34096 5.37787 5.40456 5.65525 5.73664 5.88733 5.91649 6.04078 6.08171 6.26916 6.51821 6.75224 7.13078 7.30342 7.92382 8.77948 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.004792 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.288627 B = 5841.149372 C = 6895.577060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.214 4.214 3 C 0.149 3.851 4 N -0.460 5.460 5 C 0.174 3.826 6 C 0.074 3.926 7 C 0.221 3.779 8 N -0.540 5.540 9 C 0.265 3.735 10 N -0.480 5.480 11 H 0.454 0.546 12 N -0.339 5.339 13 N -0.319 5.319 14 N -0.372 5.372 15 C 0.395 3.605 16 N -0.455 5.455 17 C 0.211 3.789 18 C -0.546 4.546 19 H 0.037 0.963 20 C 0.036 3.964 21 N -0.906 5.906 22 Si 0.932 3.068 23 H -0.295 1.295 24 H -0.268 1.268 25 H -0.276 1.276 26 C 0.117 3.883 27 C -0.149 4.149 28 C -0.182 4.182 29 C -0.151 4.151 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.265 0.735 38 H 0.032 0.968 39 H 0.037 0.963 40 H 0.266 0.734 41 H 0.069 0.931 42 H 0.028 0.972 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.120 0.880 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 8.704 0.311 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.234 4.234 3 C 0.028 3.972 4 N -0.153 5.153 5 C -0.096 4.096 6 C 0.032 3.968 7 C -0.063 4.063 8 N -0.268 5.268 9 C -0.033 4.033 10 N -0.200 5.200 11 H 0.302 0.698 12 N -0.170 5.170 13 N -0.158 5.158 14 N -0.216 5.216 15 C 0.037 3.963 16 N -0.179 5.179 17 C 0.086 3.914 18 C -0.585 4.585 19 H 0.055 0.945 20 C -0.165 4.165 21 N -0.545 5.545 22 Si 0.759 3.241 23 H -0.222 1.222 24 H -0.193 1.193 25 H -0.202 1.202 26 C -0.010 4.010 27 C -0.168 4.168 28 C -0.219 4.219 29 C -0.188 4.188 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.281 0.719 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.129 0.871 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.138 0.862 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.248 9.249 1.134 13.851 hybrid contribution -0.472 -2.616 0.952 2.824 sum -10.720 6.633 2.086 12.777 Atomic orbital electron populations 1.23649 0.93611 1.02692 0.92283 1.22655 0.97081 0.96324 1.07310 1.21068 0.90929 0.98179 0.87033 1.46250 1.08590 1.49787 1.10658 1.24530 0.98355 1.05371 0.81348 1.18226 0.84397 0.91311 1.02864 1.23917 0.96103 0.98323 0.87963 1.70402 1.14542 1.08359 1.33463 1.26982 0.97076 0.97694 0.81572 1.48083 1.33413 1.24682 1.13789 0.69844 1.77970 1.13904 1.02576 1.22511 1.73751 0.97539 1.18167 1.26379 1.74489 1.24933 1.23604 0.98615 1.22575 0.83563 0.98627 0.91509 1.59307 1.05887 1.26604 1.26067 1.19675 0.96628 0.80005 0.95057 1.21717 1.44205 0.94255 0.98294 0.94509 1.25314 0.94893 0.99024 0.97262 1.69963 1.44786 1.15095 1.24634 0.86038 0.78417 0.79216 0.80420 1.22165 1.19286 1.20163 1.21309 0.83810 1.00223 0.95663 1.22071 0.92766 1.03865 0.98061 1.22936 1.05057 0.91414 1.02538 1.23044 0.93256 0.98526 1.03978 0.88467 0.85825 0.91522 0.88631 0.85243 0.85266 0.84218 0.71946 0.95044 0.94519 0.92501 0.91238 0.95338 0.87072 0.91106 0.88284 0.86199 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.04 11.80 67.78 0.80 -1.24 16 2 C -0.21 -7.00 9.05 25.65 0.23 -6.77 16 3 C 0.15 4.47 5.82 85.64 0.50 4.96 16 4 N -0.46 -17.59 2.79 -518.90 -1.45 -19.04 16 5 C 0.17 6.52 7.30 137.64 1.01 7.52 16 6 C 0.07 1.97 6.22 29.10 0.18 2.15 16 7 C 0.22 6.44 7.38 138.63 1.02 7.46 16 8 N -0.54 -13.56 8.44 -191.81 -1.62 -15.18 16 9 C 0.27 5.08 13.13 180.36 2.37 7.44 16 10 N -0.48 -10.36 7.45 -60.49 -0.45 -10.81 16 11 H 0.45 6.44 8.96 -213.10 -1.91 4.53 16 12 N -0.34 -10.43 12.80 -51.34 -0.66 -11.09 16 13 N -0.32 -14.67 12.18 -49.53 -0.60 -15.27 16 14 N -0.37 -18.48 11.01 -58.01 -0.64 -19.12 16 15 C 0.40 18.00 5.70 260.11 1.48 19.48 16 16 N -0.46 -20.27 4.69 -710.38 -3.33 -23.60 16 17 C 0.21 10.66 4.94 85.56 0.42 11.08 16 18 C -0.55 -31.02 7.61 25.60 0.19 -30.82 16 19 H 0.04 2.28 6.43 -2.91 -0.02 2.27 16 20 C 0.04 2.05 5.46 84.65 0.46 2.51 16 21 N -0.91 -51.64 13.29 21.45 0.28 -51.35 16 22 Si 0.93 46.59 29.54 68.60 2.03 48.61 16 23 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 26 C 0.12 4.95 4.54 86.30 0.39 5.34 16 27 C -0.15 -5.21 4.82 -10.79 -0.05 -5.27 16 28 C -0.18 -6.25 10.18 30.62 0.31 -5.94 16 29 C -0.15 -4.20 10.25 30.62 0.31 -3.89 16 30 H 0.10 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.12 2.22 7.84 -2.91 -0.02 2.20 16 32 H 0.07 3.01 6.60 -2.91 -0.02 2.99 16 33 H 0.10 2.94 8.10 -2.39 -0.02 2.92 16 34 H 0.13 2.70 7.07 -2.39 -0.02 2.68 16 35 H 0.13 3.06 8.14 -2.38 -0.02 3.04 16 36 H 0.14 2.63 7.39 -2.39 -0.02 2.62 16 37 H 0.27 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.03 1.65 5.23 -2.39 -0.01 1.64 16 39 H 0.04 1.95 7.18 -2.39 -0.02 1.93 16 40 H 0.27 14.42 8.31 -92.72 -0.77 13.65 16 41 H 0.07 2.85 7.90 -2.39 -0.02 2.83 16 42 H 0.03 1.39 6.47 -2.39 -0.02 1.38 16 43 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 44 H 0.07 2.78 8.03 -2.39 -0.02 2.76 16 45 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 46 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 47 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -80.90 390.04 2.29 -78.60 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.90 Total: 24.21 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 9.63 Total: 14.03 kcal Atomic # 7 Polarization: -156.99 SS G_CDS: -8.46 Total: -165.46 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -80.90 2.29 -78.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338870902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 289.384 kcal (2) G-P(sol) polarization free energy of solvation -80.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 210.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds