Wall clock time and date at job start Wed Apr 1 2020 02:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00107 * 2 1 4 4 N 1.46507 * 109.47079 * 125.00055 * 3 2 1 5 5 C 1.37497 * 127.17299 * 270.02339 * 4 3 2 6 6 C 1.47952 * 126.47476 * 0.02562 * 5 4 3 7 7 C 1.36712 * 126.92951 * 179.97438 * 6 5 4 8 8 N 1.35204 * 106.01296 * 179.97438 * 7 6 5 9 9 C 1.46497 * 125.73102 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.46890 * 125.00389 * 9 8 7 11 11 C 1.50701 * 109.47274 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99851 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00022 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00311 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99754 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47215 * 60.00277 * 15 13 11 17 17 H 1.48499 * 109.46986 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47326 * 299.99929 * 15 13 11 19 19 N 1.28644 * 108.53898 * 0.02562 * 8 7 6 20 20 N 1.28606 * 110.54564 * 359.75317 * 19 8 7 21 21 N 1.31226 * 107.05201 * 179.97438 * 5 4 3 22 22 N 1.28517 * 109.95658 * 359.72607 * 21 5 4 23 23 C 1.31255 * 110.09680 * 0.45787 * 22 21 5 24 24 N 1.38534 * 126.37795 * 179.81852 * 23 22 21 25 25 C 1.46901 * 110.99858 * 123.64189 * 24 23 22 26 26 C 1.46898 * 110.99809 * 359.68467 * 24 23 22 27 27 C 1.53004 * 117.49905 * 248.62072 * 26 24 23 28 28 C 1.53002 * 60.00087 * 252.51634 * 27 26 24 29 29 H 1.08004 * 119.99441 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00417 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99804 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47626 * 5.00133 * 3 2 1 33 33 H 1.09003 * 109.47533 * 245.00078 * 3 2 1 34 34 H 1.07997 * 126.99747 * 359.97438 * 7 6 5 35 35 H 1.08999 * 109.47917 * 245.00338 * 9 8 7 36 36 H 1.09000 * 109.47162 * 5.01050 * 9 8 7 37 37 H 1.09001 * 109.47016 * 300.00145 * 10 9 8 38 38 H 1.08994 * 109.47054 * 60.00564 * 10 9 8 39 39 H 0.96993 * 120.00277 * 180.02562 * 14 13 11 40 40 H 1.09002 * 109.47401 * 59.99776 * 25 24 23 41 41 H 1.09001 * 109.46874 * 299.99789 * 25 24 23 42 42 H 1.09004 * 109.46970 * 179.97438 * 25 24 23 43 43 H 1.08996 * 115.55035 * 34.33424 * 26 24 23 44 44 H 1.09005 * 117.49458 * 0.02562 * 27 26 24 45 45 H 1.08996 * 117.49960 * 145.02332 * 27 26 24 46 46 H 1.09001 * 117.49883 * 252.51333 * 28 27 26 47 47 H 1.08998 * 117.50488 * 107.49112 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.7440 1.7953 2.4016 6 6 1.4721 2.3682 2.8945 7 6 1.2134 2.8311 4.1546 8 7 -0.0698 3.2566 4.1395 9 6 -0.7921 3.8369 5.2743 10 6 -1.3563 5.2021 4.8754 11 6 -2.0988 5.7994 6.0429 12 1 -2.1616 5.2595 6.9762 13 6 -2.6978 7.0351 5.9196 14 7 -2.6208 7.6928 4.7833 15 14 -3.6188 7.7751 7.3665 16 1 -2.6893 7.9398 8.5129 17 1 -4.1662 9.1001 6.9795 18 1 -4.7324 6.8740 7.7577 19 7 -0.5503 3.0653 2.9616 20 7 0.3373 2.5432 2.1914 21 7 3.8466 1.6326 3.0944 22 7 4.7542 1.1010 2.3560 23 6 4.2901 0.9009 1.1446 24 7 4.9837 0.3499 0.0795 25 6 4.2789 -0.8215 -0.4581 26 6 6.3578 0.0052 0.4681 27 6 7.4930 0.8259 -0.1473 28 6 7.2591 -0.6166 -0.6005 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.8953 2.8525 4.9918 35 1 -1.6098 3.1757 5.5612 36 1 -0.1100 3.9575 6.1159 37 1 -0.5386 5.8634 4.5886 38 1 -2.0384 5.0816 4.0339 39 1 -3.0419 8.5622 4.6967 40 1 3.2887 -0.5234 -0.8026 41 1 4.1801 -1.5759 0.3225 42 1 4.8448 -1.2343 -1.2933 43 1 6.4839 -0.3382 1.4948 44 1 7.2201 1.6220 -0.8401 45 1 8.3661 1.0228 0.4747 46 1 7.9785 -1.3688 -0.2767 47 1 6.8326 -0.7699 -1.5918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339470170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:22 Heat of formation + Delta-G solvation = 244.874052 kcal Electronic energy + Delta-G solvation = -29313.766331 eV Core-core repulsion = 25344.746546 eV Total energy + Delta-G solvation = -3969.019785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.15493 -42.72567 -38.87050 -36.52119 -35.28283 -34.57545 -33.05917 -32.76935 -31.74065 -30.08959 -29.14927 -27.28997 -26.16343 -25.66509 -23.66843 -23.06728 -22.58870 -22.20977 -21.46576 -20.57984 -20.09540 -19.71368 -17.95962 -17.24255 -16.78503 -16.47316 -16.23284 -15.87150 -15.61563 -15.24711 -15.00043 -14.75736 -14.58184 -14.22297 -14.06458 -13.68052 -13.47971 -13.17243 -12.63014 -12.50229 -12.41265 -11.86850 -11.82428 -11.68974 -11.56617 -11.46268 -11.21502 -11.14331 -10.94838 -10.91597 -10.73737 -10.57093 -10.39145 -10.27098 -10.22407 -10.06102 -9.78424 -9.51132 -9.45794 -9.22637 -8.56075 -8.08063 -6.20298 -4.27412 1.25392 1.66975 2.02066 2.28265 2.44567 2.76810 3.22858 3.23877 3.28554 3.29759 3.31456 3.42300 3.92946 4.30136 4.42805 4.49731 4.53595 4.59465 4.62500 4.74960 4.79035 4.87454 4.96857 5.08303 5.14894 5.16485 5.20176 5.22956 5.31233 5.42951 5.47010 5.58488 5.63478 5.74138 5.77900 5.82561 5.85761 5.97700 6.04365 6.19331 6.30379 6.32120 6.43740 6.49427 6.81904 6.99644 7.34395 7.42869 7.73493 8.05216 8.65611 8.73347 8.77443 9.38505 10.90609 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.002124 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.189834 B =13182.202399 C =13907.890486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.204 4.204 3 C 0.137 3.863 4 N -0.463 5.463 5 C 0.281 3.719 6 C 0.025 3.975 7 C 0.004 3.996 8 N -0.265 5.265 9 C 0.110 3.890 10 C 0.015 3.985 11 C -0.534 4.534 12 H 0.061 0.939 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 N -0.059 5.059 20 N -0.270 5.270 21 N -0.269 5.269 22 N -0.313 5.313 23 C 0.360 3.640 24 N -0.426 5.426 25 C 0.008 3.992 26 C 0.016 3.984 27 C -0.155 4.155 28 C -0.172 4.172 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.198 0.802 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.025 0.975 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.584 -18.553 -11.836 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.223 4.223 3 C 0.015 3.985 4 N -0.157 5.157 5 C 0.014 3.986 6 C -0.115 4.115 7 C -0.152 4.152 8 N -0.057 5.057 9 C -0.009 4.009 10 C -0.023 4.023 11 C -0.572 4.572 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.727 3.273 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.039 5.039 20 N -0.139 5.139 21 N -0.110 5.110 22 N -0.159 5.159 23 C 0.004 3.996 24 N -0.148 5.148 25 C -0.139 4.139 26 C -0.091 4.091 27 C -0.193 4.193 28 C -0.210 4.210 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.215 0.785 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.134 0.866 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.239 -17.855 -12.068 25.830 hybrid contribution -0.566 -0.057 0.910 1.073 sum 13.673 -17.912 -11.158 25.145 Atomic orbital electron populations 1.24123 0.95594 1.03062 0.94222 1.23058 0.96556 0.97199 1.05472 1.21141 0.91825 0.98760 0.86807 1.46131 1.10481 1.47543 1.11534 1.20939 0.94007 1.02337 0.81337 1.18338 0.91622 1.09297 0.92222 1.23511 0.88350 1.02991 1.00339 1.47900 1.09027 1.37436 1.11315 1.22898 0.96168 0.99077 0.82729 1.19421 0.96985 0.87252 0.98628 1.20879 1.34951 1.03515 0.97875 0.92066 1.24995 0.96052 0.96877 0.96093 1.69955 1.43583 1.14169 1.24633 0.86526 0.80070 0.78413 0.82255 1.20028 1.21122 1.20005 1.78242 1.20869 1.15510 0.89285 1.75204 0.97992 1.15335 1.25323 1.74312 0.96220 1.16086 1.24400 1.74524 1.23447 1.19809 0.98100 1.22333 0.82995 1.02150 0.92120 1.58318 1.01840 1.29258 1.25409 1.22968 1.00219 0.90335 1.00359 1.22383 0.82940 1.05863 0.97953 1.23087 0.98700 0.94376 1.03113 1.23185 1.01799 0.97184 0.98799 0.86839 0.88015 0.86973 0.86389 0.88131 0.78486 0.88761 0.88228 0.95670 0.94362 0.92484 0.89356 0.93918 0.89387 0.86554 0.88094 0.88091 0.88022 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 14.32 29.01 0.42 -0.86 16 2 C -0.20 -1.97 8.68 -36.03 -0.31 -2.28 16 3 C 0.14 1.51 5.40 -5.19 -0.03 1.48 16 4 N -0.46 -6.37 2.81 -115.91 -0.33 -6.69 16 5 C 0.28 4.53 7.94 -153.82 -1.22 3.31 16 6 C 0.02 0.41 7.06 -83.21 -0.59 -0.17 16 7 C 0.00 0.06 11.54 -16.62 -0.19 -0.13 16 8 N -0.27 -4.71 3.43 -60.93 -0.21 -4.92 16 9 C 0.11 1.97 6.39 -4.04 -0.03 1.94 16 10 C 0.02 0.36 5.10 -27.88 -0.14 0.21 16 11 C -0.53 -13.76 9.11 -34.44 -0.31 -14.07 16 12 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 15 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 N -0.06 -1.13 12.88 60.35 0.78 -0.35 16 20 N -0.27 -4.73 10.76 33.01 0.36 -4.38 16 21 N -0.27 -4.58 12.21 32.60 0.40 -4.19 16 22 N -0.31 -5.01 10.95 30.34 0.33 -4.68 16 23 C 0.36 4.90 7.23 -318.69 -2.30 2.60 16 24 N -0.43 -4.40 4.95 -174.71 -0.87 -5.26 16 25 C 0.01 0.06 8.60 60.07 0.52 0.58 16 26 C 0.02 0.15 4.94 -67.71 -0.33 -0.18 16 27 C -0.16 -1.22 10.46 -26.73 -0.28 -1.50 16 28 C -0.17 -1.07 9.72 -26.73 -0.26 -1.33 16 29 H 0.11 1.23 7.84 -52.48 -0.41 0.81 16 30 H 0.10 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.11 0.96 6.16 -52.49 -0.32 0.63 16 32 H 0.12 1.47 6.34 -51.93 -0.33 1.14 16 33 H 0.10 0.92 7.57 -51.93 -0.39 0.52 16 34 H 0.20 2.55 8.06 -52.49 -0.42 2.12 16 35 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.10 1.54 8.06 -51.93 -0.42 1.12 16 37 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 1.00 8.11 -51.93 -0.42 0.58 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.09 0.64 3.46 -51.93 -0.18 0.46 16 41 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.48 6.76 -51.93 -0.35 0.13 16 43 H 0.12 1.23 7.47 -51.93 -0.39 0.84 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.54 7.25 -51.93 -0.38 0.16 16 LS Contribution 394.14 15.07 5.94 5.94 Total: -1.00 -31.64 394.14 -9.57 -41.21 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.52 Total: 1.47 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -5.17 Total: -8.79 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 1.20 Total: -55.24 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.64 -9.57 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339470170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 286.084 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 254.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 244.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds