Wall clock time and date at job start Wed Apr 1 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00107 * 2 1 4 4 N 1.46507 * 109.47079 * 125.00055 * 3 2 1 5 5 C 1.37497 * 127.17299 * 270.02339 * 4 3 2 6 6 C 1.47952 * 126.47476 * 0.02562 * 5 4 3 7 7 C 1.36712 * 126.92951 * 179.97438 * 6 5 4 8 8 N 1.35204 * 106.01296 * 179.97438 * 7 6 5 9 9 C 1.46497 * 125.73102 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.46890 * 125.00389 * 9 8 7 11 11 C 1.50701 * 109.47274 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99851 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00022 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00311 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99754 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47215 * 60.00277 * 15 13 11 17 17 H 1.48499 * 109.46986 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47326 * 299.99929 * 15 13 11 19 19 N 1.28644 * 108.53898 * 0.02562 * 8 7 6 20 20 N 1.28606 * 110.54564 * 359.75317 * 19 8 7 21 21 N 1.31226 * 107.05201 * 179.97438 * 5 4 3 22 22 N 1.28517 * 109.95658 * 359.72607 * 21 5 4 23 23 C 1.31255 * 110.09680 * 0.45787 * 22 21 5 24 24 N 1.38534 * 126.37795 * 179.81852 * 23 22 21 25 25 C 1.46901 * 110.99858 * 123.64189 * 24 23 22 26 26 C 1.46898 * 110.99809 * 359.68467 * 24 23 22 27 27 C 1.53004 * 117.49905 * 248.62072 * 26 24 23 28 28 C 1.53002 * 60.00087 * 252.51634 * 27 26 24 29 29 H 1.08004 * 119.99441 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00417 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99804 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47626 * 5.00133 * 3 2 1 33 33 H 1.09003 * 109.47533 * 245.00078 * 3 2 1 34 34 H 1.07997 * 126.99747 * 359.97438 * 7 6 5 35 35 H 1.08999 * 109.47917 * 245.00338 * 9 8 7 36 36 H 1.09000 * 109.47162 * 5.01050 * 9 8 7 37 37 H 1.09001 * 109.47016 * 300.00145 * 10 9 8 38 38 H 1.08994 * 109.47054 * 60.00564 * 10 9 8 39 39 H 0.96993 * 120.00277 * 180.02562 * 14 13 11 40 40 H 1.09002 * 109.47401 * 59.99776 * 25 24 23 41 41 H 1.09001 * 109.46874 * 299.99789 * 25 24 23 42 42 H 1.09004 * 109.46970 * 179.97438 * 25 24 23 43 43 H 1.08996 * 115.55035 * 34.33424 * 26 24 23 44 44 H 1.09005 * 117.49458 * 0.02562 * 27 26 24 45 45 H 1.08996 * 117.49960 * 145.02332 * 27 26 24 46 46 H 1.09001 * 117.49883 * 252.51333 * 28 27 26 47 47 H 1.08998 * 117.50488 * 107.49112 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.7440 1.7953 2.4016 6 6 1.4721 2.3682 2.8945 7 6 1.2134 2.8311 4.1546 8 7 -0.0698 3.2566 4.1395 9 6 -0.7921 3.8369 5.2743 10 6 -1.3563 5.2021 4.8754 11 6 -2.0988 5.7994 6.0429 12 1 -2.1616 5.2595 6.9762 13 6 -2.6978 7.0351 5.9196 14 7 -2.6208 7.6928 4.7833 15 14 -3.6188 7.7751 7.3665 16 1 -2.6893 7.9398 8.5129 17 1 -4.1662 9.1001 6.9795 18 1 -4.7324 6.8740 7.7577 19 7 -0.5503 3.0653 2.9616 20 7 0.3373 2.5432 2.1914 21 7 3.8466 1.6326 3.0944 22 7 4.7542 1.1010 2.3560 23 6 4.2901 0.9009 1.1446 24 7 4.9837 0.3499 0.0795 25 6 4.2789 -0.8215 -0.4581 26 6 6.3578 0.0052 0.4681 27 6 7.4930 0.8259 -0.1473 28 6 7.2591 -0.6166 -0.6005 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.8953 2.8525 4.9918 35 1 -1.6098 3.1757 5.5612 36 1 -0.1100 3.9575 6.1159 37 1 -0.5386 5.8634 4.5886 38 1 -2.0384 5.0816 4.0339 39 1 -3.0419 8.5622 4.6967 40 1 3.2887 -0.5234 -0.8026 41 1 4.1801 -1.5759 0.3225 42 1 4.8448 -1.2343 -1.2933 43 1 6.4839 -0.3382 1.4948 44 1 7.2201 1.6220 -0.8401 45 1 8.3661 1.0228 0.4747 46 1 7.9785 -1.3688 -0.2767 47 1 6.8326 -0.7699 -1.5918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339470170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:21 Heat of formation + Delta-G solvation = 228.209696 kcal Electronic energy + Delta-G solvation = -29314.488952 eV Core-core repulsion = 25344.746546 eV Total energy + Delta-G solvation = -3969.742406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.42223 -43.92866 -39.60098 -37.46877 -36.79454 -35.39962 -34.80655 -33.82178 -32.95023 -31.81603 -30.26533 -28.21606 -27.44331 -26.94746 -24.87739 -24.43555 -23.61464 -23.03960 -22.66640 -21.71713 -21.20937 -20.59391 -19.08484 -18.72861 -17.84786 -17.73850 -17.49954 -17.21368 -16.66028 -16.45941 -16.12175 -15.88754 -15.59553 -15.43020 -15.09728 -14.92333 -14.45581 -14.32307 -13.85556 -13.66333 -13.46989 -13.14304 -13.04457 -12.84075 -12.76162 -12.68501 -12.49781 -12.34686 -12.26504 -12.21299 -11.93025 -11.85289 -11.49492 -11.47055 -11.39760 -11.26151 -11.18838 -10.95739 -10.60813 -10.57841 -10.29604 -9.18086 -8.25122 -6.38754 0.08594 0.67119 0.74253 1.26709 1.31415 1.44239 1.46351 1.52281 1.54959 2.01413 2.39984 2.43288 2.73569 2.79780 3.10678 3.48163 3.53797 3.69700 3.77093 3.83331 3.93530 3.95560 4.02925 4.10105 4.18916 4.24600 4.26801 4.37988 4.45553 4.48344 4.57323 4.68120 4.72280 4.74389 4.81980 4.86193 4.91271 4.93942 5.08670 5.26170 5.28794 5.29389 5.45020 5.49271 5.52649 5.64772 5.67230 5.75111 6.02366 6.05170 6.77420 7.31372 7.32879 7.54450 8.87005 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.002124 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.189834 B =13182.202399 C =13907.890486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.202 4.202 3 C 0.134 3.866 4 N -0.462 5.462 5 C 0.264 3.736 6 C 0.018 3.982 7 C 0.014 3.986 8 N -0.271 5.271 9 C 0.123 3.877 10 C 0.022 3.978 11 C -0.542 4.542 12 H 0.082 0.918 13 C 0.001 3.999 14 N -0.933 5.933 15 Si 0.971 3.029 16 H -0.262 1.262 17 H -0.290 1.290 18 H -0.264 1.264 19 N -0.097 5.097 20 N -0.266 5.266 21 N -0.286 5.286 22 N -0.342 5.342 23 C 0.373 3.627 24 N -0.423 5.423 25 C 0.006 3.994 26 C -0.010 4.010 27 C -0.163 4.163 28 C -0.139 4.139 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.229 0.771 35 H 0.110 0.890 36 H 0.132 0.868 37 H -0.007 1.007 38 H 0.002 0.998 39 H 0.264 0.736 40 H 0.092 0.908 41 H 0.039 0.961 42 H 0.116 0.884 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.582 -20.562 -11.629 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.221 4.221 3 C 0.013 3.987 4 N -0.156 5.156 5 C -0.004 4.004 6 C -0.122 4.122 7 C -0.141 4.141 8 N -0.062 5.062 9 C 0.005 3.995 10 C -0.016 4.016 11 C -0.580 4.580 12 H 0.100 0.900 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.795 3.205 16 H -0.187 1.187 17 H -0.216 1.216 18 H -0.188 1.188 19 N -0.077 5.077 20 N -0.134 5.134 21 N -0.128 5.128 22 N -0.188 5.188 23 C 0.016 3.984 24 N -0.146 5.146 25 C -0.140 4.140 26 C -0.117 4.117 27 C -0.201 4.201 28 C -0.177 4.177 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.139 0.861 34 H 0.245 0.755 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.011 0.989 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.058 0.942 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.123 0.877 46 H 0.138 0.862 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.235 -19.893 -11.873 27.728 hybrid contribution -0.752 0.514 0.714 1.158 sum 14.483 -19.379 -11.159 26.643 Atomic orbital electron populations 1.24191 0.95726 1.03213 0.94043 1.23073 0.96459 0.97003 1.05519 1.21296 0.91585 0.99053 0.86743 1.46264 1.10900 1.47073 1.11342 1.20859 0.93681 1.03421 0.82462 1.18556 0.91685 1.09366 0.92559 1.24007 0.87676 1.01460 1.01005 1.47802 1.09671 1.37860 1.10912 1.22677 0.97559 0.96016 0.83282 1.19168 0.95217 0.90094 0.97093 1.21417 1.34071 1.03563 0.98961 0.90027 1.26008 0.97224 0.97729 0.98785 1.70117 1.45246 1.14650 1.27167 0.85400 0.78984 0.77229 0.78846 1.18698 1.21630 1.18828 1.78239 1.21992 1.17213 0.90209 1.75178 0.98183 1.14834 1.25209 1.74219 0.96645 1.16544 1.25384 1.74463 1.23752 1.21270 0.99290 1.22726 0.82710 1.00760 0.92195 1.58475 1.02313 1.30293 1.23531 1.23109 1.00730 0.89177 1.00971 1.22432 0.82726 1.08178 0.98397 1.23144 0.98261 0.95511 1.03168 1.23299 0.99965 0.96185 0.98210 0.88501 0.86139 0.85336 0.88163 0.86060 0.75500 0.87199 0.84978 0.98906 0.97922 0.92704 0.88988 0.94220 0.86556 0.88261 0.88701 0.87686 0.86230 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 14.32 67.78 0.97 -1.51 16 2 C -0.20 -3.66 8.68 25.64 0.22 -3.43 16 3 C 0.13 2.88 5.40 85.63 0.46 3.35 16 4 N -0.46 -12.54 2.81 -520.62 -1.46 -14.00 16 5 C 0.26 8.53 7.94 136.28 1.08 9.61 16 6 C 0.02 0.61 7.06 40.93 0.29 0.90 16 7 C 0.01 0.44 11.54 83.82 0.97 1.40 16 8 N -0.27 -9.60 3.43 -346.68 -1.19 -10.79 16 9 C 0.12 4.32 6.39 86.38 0.55 4.87 16 10 C 0.02 1.08 5.10 29.85 0.15 1.24 16 11 C -0.54 -27.84 9.11 25.60 0.23 -27.61 16 12 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 15 Si 0.97 41.73 29.54 68.60 2.03 43.76 16 16 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 17 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 19 N -0.10 -3.81 12.88 37.02 0.48 -3.33 16 20 N -0.27 -9.51 10.76 -49.48 -0.53 -10.04 16 21 N -0.29 -9.79 12.21 -50.78 -0.62 -10.41 16 22 N -0.34 -10.97 10.95 -57.92 -0.63 -11.60 16 23 C 0.37 9.92 7.23 260.05 1.88 11.80 16 24 N -0.42 -8.09 4.95 -706.65 -3.50 -11.59 16 25 C 0.01 0.07 8.60 127.69 1.10 1.17 16 26 C -0.01 -0.17 4.94 44.92 0.22 0.05 16 27 C -0.16 -2.32 10.46 30.60 0.32 -2.00 16 28 C -0.14 -1.31 9.72 30.60 0.30 -1.02 16 29 H 0.10 2.14 7.84 -2.91 -0.02 2.12 16 30 H 0.12 1.76 8.06 -2.91 -0.02 1.73 16 31 H 0.13 1.92 6.16 -2.91 -0.02 1.90 16 32 H 0.10 2.55 6.34 -2.39 -0.02 2.54 16 33 H 0.12 2.05 7.57 -2.39 -0.02 2.03 16 34 H 0.23 5.46 8.06 -2.91 -0.02 5.44 16 35 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.13 3.77 8.06 -2.39 -0.02 3.75 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.00 0.13 8.11 -2.39 -0.02 0.11 16 39 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.09 1.10 3.46 -2.39 -0.01 1.09 16 41 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.12 0.82 6.76 -2.38 -0.02 0.80 16 43 H 0.10 2.07 7.47 -2.39 -0.02 2.05 16 44 H 0.09 1.46 8.14 -2.38 -0.02 1.45 16 45 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.11 0.78 7.25 -2.39 -0.02 0.76 16 Total: -1.00 -71.30 394.14 5.05 -66.26 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.99 Total: 17.37 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 9.21 Total: -0.65 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -7.18 Total: -126.73 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -71.30 5.05 -66.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339470170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 294.465 kcal (2) G-P(sol) polarization free energy of solvation -71.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 223.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 228.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds