Wall clock time and date at job start Wed Apr 1 2020 02:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99607 * 2 1 4 4 N 1.46498 * 109.46914 * 124.99933 * 3 2 1 5 5 C 1.37735 * 127.16014 * 269.90599 * 4 3 2 6 6 C 1.47318 * 126.48279 * 359.97438 * 5 4 3 7 7 N 1.32004 * 126.19089 * 359.69205 * 6 5 4 8 8 C 1.32923 * 109.76983 * 179.82773 * 7 6 5 9 9 N 1.30784 * 109.40398 * 0.44531 * 8 7 6 10 10 N 1.36030 * 126.18685 * 180.02562 * 6 5 4 11 11 C 1.46501 * 126.93177 * 359.97438 * 10 6 5 12 12 N 1.31425 * 107.02838 * 179.83617 * 5 4 3 13 13 N 1.28520 * 109.89576 * 0.43711 * 12 5 4 14 14 C 1.31543 * 110.08871 * 359.72081 * 13 12 5 15 15 N 1.38237 * 126.34681 * 180.02562 * 14 13 12 16 16 C 1.46900 * 111.00109 * 256.19720 * 15 14 13 17 17 C 1.50700 * 109.47215 * 59.44198 * 16 15 14 18 18 H 1.08004 * 119.99703 * 3.90027 * 17 16 15 19 19 C 1.37870 * 120.00205 * 183.90434 * 17 16 15 20 20 N 1.31512 * 120.00109 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00031 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46919 * 90.00140 * 21 19 17 23 23 H 1.48499 * 109.46933 * 210.00219 * 21 19 17 24 24 H 1.48498 * 109.47114 * 330.00117 * 21 19 17 25 25 C 1.46894 * 111.00269 * 20.15426 * 15 14 13 26 26 C 1.52999 * 109.47257 * 163.77673 * 25 15 14 27 27 C 1.53000 * 117.49808 * 243.44769 * 26 25 15 28 28 C 1.53002 * 117.50060 * 174.78980 * 26 25 15 29 29 H 1.07998 * 120.00115 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00374 * 359.72823 * 1 2 3 31 31 H 1.07997 * 120.00020 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46750 * 244.99813 * 3 2 1 33 33 H 1.08995 * 109.47254 * 4.99860 * 3 2 1 34 34 H 1.08007 * 125.29806 * 180.16179 * 8 7 6 35 35 H 1.08993 * 109.47199 * 90.00331 * 11 10 6 36 36 H 1.09007 * 109.46989 * 210.00380 * 11 10 6 37 37 H 1.09002 * 109.46863 * 329.99619 * 11 10 6 38 38 H 1.08996 * 109.46948 * 179.44466 * 16 15 14 39 39 H 1.08999 * 109.46789 * 299.44042 * 16 15 14 40 40 H 0.97004 * 120.00480 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.47239 * 283.77588 * 25 15 14 42 42 H 1.09006 * 109.47221 * 43.77815 * 25 15 14 43 43 H 1.08992 * 115.55056 * 29.12007 * 26 25 15 44 44 H 1.08999 * 117.50306 * 359.97438 * 27 26 25 45 45 H 1.09002 * 117.49979 * 145.02159 * 27 26 25 46 46 H 1.09002 * 117.50175 * 214.98273 * 28 26 25 47 47 H 1.09008 * 117.49526 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7437 1.7984 2.4031 6 6 1.4784 2.3723 2.8927 7 7 0.3743 2.5394 2.1886 8 6 -0.5688 3.0808 2.9530 9 7 -0.0923 3.2812 4.1544 10 7 1.2383 2.8317 4.1503 11 6 2.1778 2.8526 5.2742 12 7 3.8468 1.6318 3.0978 13 7 4.7568 1.1098 2.3553 14 6 4.2886 0.9058 1.1430 15 7 4.9812 0.3600 0.0784 16 6 5.3840 1.4008 -0.8768 17 6 6.2616 2.4089 -0.1808 18 1 6.5483 2.2555 0.8491 19 6 6.6986 3.5271 -0.8588 20 7 7.4649 4.4066 -0.2516 21 14 6.2032 3.7922 -2.6403 22 1 4.9342 4.5619 -2.6919 23 1 7.2701 4.5488 -3.3434 24 1 6.0114 2.4765 -3.3017 25 6 6.1450 -0.4057 0.5445 26 6 6.6437 -1.3122 -0.5827 27 6 6.5773 -2.8237 -0.3553 28 6 7.9287 -2.1050 -0.3355 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5401 0.9353 0.0044 31 1 1.8500 -0.9353 -0.0004 32 1 2.6212 1.4026 -0.9313 33 1 1.3585 2.1316 0.0895 34 1 -1.5710 3.3223 2.6308 35 1 2.7269 3.7942 5.2712 36 1 1.6272 2.7560 6.2099 37 1 2.8783 2.0231 5.1776 38 1 5.9354 0.9453 -1.6993 39 1 4.4964 1.8993 -1.2665 40 1 7.7720 5.1935 -0.7284 41 1 6.9390 0.2817 0.8361 42 1 5.8592 -1.0155 1.4016 43 1 6.4643 -0.9470 -1.5938 44 1 6.1788 -3.1724 0.5974 45 1 6.3547 -3.4530 -1.2170 46 1 8.5946 -2.2617 -1.1841 47 1 8.4185 -1.9811 0.6304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339905183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:34 Heat of formation + Delta-G solvation = 244.374685 kcal Electronic energy + Delta-G solvation = -30943.112618 eV Core-core repulsion = 26974.071179 eV Total energy + Delta-G solvation = -3969.041439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.63770 -41.79502 -38.07602 -36.09280 -35.70263 -34.01408 -32.64574 -32.59979 -31.75715 -29.27457 -28.10600 -27.28994 -26.68818 -25.62035 -23.52793 -22.54936 -22.10959 -21.87260 -20.78054 -20.41088 -19.69543 -19.36519 -17.36021 -17.17821 -16.57250 -16.29175 -15.95648 -15.63576 -15.19662 -14.94232 -14.72866 -14.39195 -14.23732 -14.02449 -13.59005 -13.40190 -13.16275 -13.07460 -12.62765 -12.48559 -12.26808 -11.91657 -11.61875 -11.51905 -11.43520 -11.24653 -11.19693 -10.86851 -10.63686 -10.58926 -10.25266 -10.21037 -10.07197 -10.00601 -9.85366 -9.76720 -9.59908 -9.54816 -9.46088 -8.77224 -8.69692 -7.66268 -6.22038 -4.25250 1.02211 1.87691 2.19344 2.30169 2.82457 2.95370 3.14532 3.22155 3.24093 3.40004 3.69266 4.07479 4.24873 4.37982 4.46005 4.70006 4.88500 5.00429 5.06424 5.11484 5.20408 5.24950 5.29544 5.31122 5.34232 5.51381 5.64137 5.71371 5.73144 5.77962 5.86811 5.87013 6.00285 6.12946 6.19727 6.27255 6.34707 6.35101 6.44870 6.51225 6.59455 6.60176 6.64822 6.72788 6.74728 6.90772 7.18573 7.49116 7.79543 7.95879 8.26608 8.86040 9.02146 9.35997 10.90185 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.004297 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.370623 B = 6514.488696 C = 7328.631052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.170 4.170 3 C 0.138 3.862 4 N -0.442 5.442 5 C 0.200 3.800 6 C 0.376 3.624 7 N -0.532 5.532 8 C 0.201 3.799 9 N -0.315 5.315 10 N -0.354 5.354 11 C 0.094 3.906 12 N -0.246 5.246 13 N -0.308 5.308 14 C 0.433 3.567 15 N -0.458 5.458 16 C 0.159 3.841 17 C -0.562 4.562 18 H 0.091 0.909 19 C 0.081 3.919 20 N -0.885 5.885 21 Si 0.869 3.131 22 H -0.276 1.276 23 H -0.283 1.283 24 H -0.263 1.263 25 C 0.104 3.896 26 C -0.133 4.133 27 C -0.184 4.184 28 C -0.178 4.178 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.220 0.780 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.051 0.949 39 H 0.025 0.975 40 H 0.266 0.734 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.957 -9.028 2.201 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.188 4.188 3 C 0.016 3.984 4 N -0.135 5.135 5 C -0.066 4.066 6 C 0.100 3.900 7 N -0.262 5.262 8 C -0.102 4.102 9 N -0.144 5.144 10 N -0.145 5.145 11 C -0.048 4.048 12 N -0.092 5.092 13 N -0.155 5.155 14 C 0.077 3.923 15 N -0.181 5.181 16 C 0.034 3.966 17 C -0.600 4.600 18 H 0.109 0.891 19 C -0.123 4.123 20 N -0.522 5.522 21 Si 0.695 3.305 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.187 1.187 25 C -0.023 4.023 26 C -0.151 4.151 27 C -0.221 4.221 28 C -0.215 4.215 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.236 0.764 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.127 0.873 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.618 -8.903 3.363 15.019 hybrid contribution -0.396 0.881 -1.795 2.039 sum -12.014 -8.022 1.568 14.531 Atomic orbital electron populations 1.23901 0.95557 1.02151 0.97960 1.22983 0.96133 0.97756 1.01972 1.21128 0.91687 0.98130 0.87440 1.45857 1.10709 1.46839 1.10129 1.20136 0.93778 1.08834 0.83814 1.20070 0.91167 0.95731 0.83030 1.70656 0.99059 1.23847 1.32628 1.25835 1.00144 0.96966 0.87205 1.78066 0.90283 1.23606 1.22468 1.50420 1.09786 1.44425 1.09847 1.22223 0.90800 1.05620 0.86118 1.74198 0.95982 1.13418 1.25644 1.74824 1.20225 1.19236 1.01223 1.22357 0.82367 0.94243 0.93303 1.59090 1.24888 1.24227 1.09909 1.20437 0.96069 0.88776 0.91307 1.21655 1.31644 1.05434 1.01259 0.89071 1.24877 0.94244 0.95502 0.97697 1.69907 1.33933 1.11325 1.37023 0.86971 0.78775 0.79048 0.85699 1.20158 1.20830 1.18725 1.21544 0.91246 0.94814 0.94701 1.22198 1.00515 0.91822 1.00607 1.23017 1.01127 0.95408 1.02564 1.22927 0.90843 1.04664 1.03077 0.88481 0.87574 0.86926 0.87792 0.86996 0.76374 0.89732 0.89176 0.87094 0.93135 0.95678 0.92442 0.90142 0.91236 0.87318 0.89204 0.89400 0.89033 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 14.32 29.01 0.42 -1.32 16 2 C -0.17 -2.21 9.85 -36.02 -0.35 -2.57 16 3 C 0.14 2.12 6.25 -5.19 -0.03 2.08 16 4 N -0.44 -8.16 2.82 -116.12 -0.33 -8.48 16 5 C 0.20 3.73 7.86 -153.71 -1.21 2.52 16 6 C 0.38 6.21 7.83 -154.82 -1.21 5.00 16 7 N -0.53 -7.88 9.43 -12.47 -0.12 -8.00 16 8 C 0.20 2.53 12.99 -92.03 -1.20 1.33 16 9 N -0.31 -4.45 12.69 29.24 0.37 -4.08 16 10 N -0.35 -5.28 4.09 -65.59 -0.27 -5.55 16 11 C 0.09 1.13 11.14 59.85 0.67 1.79 16 12 N -0.25 -4.94 10.35 32.52 0.34 -4.60 16 13 N -0.31 -6.70 10.95 30.28 0.33 -6.36 16 14 C 0.43 8.81 5.79 -319.13 -1.85 6.97 16 15 N -0.46 -8.88 4.68 -175.94 -0.82 -9.70 16 16 C 0.16 3.47 3.96 -4.98 -0.02 3.45 16 17 C -0.56 -14.85 8.16 -34.44 -0.28 -15.13 16 18 H 0.09 2.71 6.49 -52.48 -0.34 2.37 16 19 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 20 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 21 Si 0.87 20.17 27.39 -169.99 -4.66 15.51 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.26 -5.68 6.66 56.52 0.38 -5.31 16 25 C 0.10 1.89 4.58 -3.83 -0.02 1.87 16 26 C -0.13 -2.05 5.69 -90.62 -0.52 -2.56 16 27 C -0.18 -2.33 10.18 -26.69 -0.27 -2.61 16 28 C -0.18 -2.36 10.25 -26.69 -0.27 -2.63 16 29 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.11 1.13 7.84 -52.48 -0.41 0.72 16 31 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.10 1.62 6.46 -51.93 -0.34 1.28 16 33 H 0.11 1.67 6.30 -51.93 -0.33 1.34 16 34 H 0.22 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.11 1.41 6.57 -51.93 -0.34 1.06 16 38 H 0.05 1.08 5.95 -51.93 -0.31 0.77 16 39 H 0.03 0.55 5.77 -51.93 -0.30 0.25 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.08 1.71 6.43 -51.93 -0.33 1.38 16 42 H 0.07 1.22 7.56 -51.93 -0.39 0.83 16 43 H 0.11 1.74 6.80 -51.93 -0.35 1.39 16 44 H 0.09 1.10 8.03 -51.93 -0.42 0.69 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.09 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 388.94 15.07 5.86 5.86 Total: -1.00 -31.85 388.94 -11.17 -43.02 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.40 Total: 7.57 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -6.25 Total: 0.33 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: 0.28 Total: -72.29 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.66 Total: 15.51 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.85 -11.17 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339905183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 287.396 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 255.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 244.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds