Wall clock time and date at job start Wed Apr 1 2020 02:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36738 * 127.13644 * 2 1 4 4 C 1.50698 * 126.34773 * 359.97438 * 3 2 1 5 5 C 1.53004 * 109.46718 * 90.00583 * 4 3 2 6 6 C 1.50697 * 109.47130 * 180.02562 * 5 4 3 7 7 H 1.07999 * 120.00024 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00258 * 179.72383 * 6 5 4 9 9 N 1.31518 * 120.00226 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00368 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46902 * 59.99740 * 10 8 6 12 12 H 1.48502 * 109.47285 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47355 * 300.00322 * 10 8 6 14 14 N 1.30298 * 107.30557 * 180.26290 * 3 2 1 15 15 N 1.28531 * 110.05256 * 359.55947 * 14 3 2 16 16 C 1.31215 * 109.86085 * 0.44964 * 15 14 3 17 17 N 1.38578 * 126.47578 * 179.72836 * 16 15 14 18 18 C 1.46961 * 110.99731 * 61.97106 * 17 16 15 19 19 C 1.53049 * 109.36102 * 176.81065 * 18 17 16 20 20 N 1.46961 * 109.36458 * 58.40681 * 19 18 17 21 21 C 1.38406 * 110.99876 * 176.80753 * 20 19 18 22 22 N 1.32498 * 119.21472 * 123.52823 * 21 20 19 23 23 C 1.32277 * 120.73567 * 179.71910 * 22 21 20 24 24 C 1.38601 * 119.19695 * 0.54128 * 23 22 21 25 25 C 1.38599 * 118.55942 * 359.73491 * 24 23 22 26 26 N 1.32271 * 119.19873 * 359.97438 * 25 24 23 27 27 C 1.46953 * 110.87561 * 300.67371 * 20 19 18 28 28 C 1.46955 * 110.99821 * 298.17455 * 17 16 15 29 29 H 1.09000 * 109.47252 * 85.38212 * 1 2 3 30 30 H 1.08999 * 109.47044 * 205.37903 * 1 2 3 31 31 H 1.08995 * 109.47273 * 325.38454 * 1 2 3 32 32 H 1.08994 * 109.47615 * 330.00556 * 4 3 2 33 33 H 1.08999 * 109.47698 * 209.99863 * 4 3 2 34 34 H 1.08996 * 109.47783 * 59.99942 * 5 4 3 35 35 H 1.09000 * 109.47151 * 299.99797 * 5 4 3 36 36 H 0.96995 * 120.00613 * 180.02562 * 9 8 6 37 37 H 1.08992 * 109.48854 * 296.78245 * 18 17 16 38 38 H 1.09001 * 109.48331 * 56.84849 * 18 17 16 39 39 H 1.09000 * 109.49196 * 298.43128 * 19 18 17 40 40 H 1.09009 * 109.50275 * 178.37993 * 19 18 17 41 41 H 1.08006 * 120.39724 * 180.25555 * 23 22 21 42 42 H 1.08000 * 120.71642 * 179.71345 * 24 23 22 43 43 H 1.08003 * 120.39911 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.49606 * 299.35401 * 27 20 19 45 45 H 1.08999 * 109.50598 * 179.29909 * 27 20 19 46 46 H 1.08993 * 109.49103 * 303.15385 * 28 17 16 47 47 H 1.09001 * 109.48918 * 63.21995 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 -0.0005 5 6 1.7167 3.0242 1.4418 6 6 1.2877 4.4688 1.4414 7 1 1.1345 4.9863 0.5060 8 6 1.0858 5.1284 2.6352 9 7 1.2671 4.4967 3.7744 10 14 0.5547 6.9193 2.6347 11 1 -0.7450 7.0499 1.9283 12 1 0.4065 7.3921 4.0346 13 1 1.5798 7.7394 1.9406 14 7 3.5162 0.6481 -0.0057 15 7 3.5212 -0.6372 0.0000 16 6 2.2888 -1.0878 0.0000 17 7 1.8978 -2.4173 0.0000 18 6 2.3677 -3.1045 1.2111 19 6 1.8492 -4.5444 1.2110 20 7 2.3221 -5.2325 0.0015 21 6 1.9315 -6.5603 0.0016 22 7 1.2231 -7.0261 -1.0166 23 6 0.8387 -8.2913 -1.0501 24 6 1.1762 -9.1286 0.0017 25 6 1.9131 -8.6072 1.0534 26 7 2.2707 -7.3342 1.0221 27 6 1.8521 -4.5453 -1.2094 28 6 2.3706 -3.1053 -1.2094 29 1 -0.3634 0.0827 -1.0243 30 1 -0.3633 -0.9285 0.4405 31 1 -0.3633 0.8457 0.5837 32 1 0.9057 2.6301 -0.5146 33 1 2.6122 3.1362 -0.5142 34 1 2.6731 2.9290 1.9560 35 1 0.9666 2.4230 1.9556 36 1 1.1248 4.9605 4.6143 37 1 3.4575 -3.1103 1.2261 38 1 1.9943 -2.5835 2.0928 39 1 0.7593 -4.5386 1.2235 40 1 2.2203 -5.0649 2.0940 41 1 0.2649 -8.6663 -1.8848 42 1 0.8711 -10.1646 0.0018 43 1 2.1920 -9.2329 1.8884 44 1 0.7623 -4.5394 -1.2245 45 1 2.2251 -5.0661 -2.0913 46 1 1.9993 -2.5851 -2.0923 47 1 3.4605 -3.1112 -1.2218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340019694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:29 Heat of formation + Delta-G solvation = 162.118633 kcal Electronic energy + Delta-G solvation = -29253.006801 eV Core-core repulsion = 25280.398472 eV Total energy + Delta-G solvation = -3972.608329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.62240 -41.62155 -39.37736 -36.08655 -34.81600 -34.17095 -33.82265 -31.99629 -31.38749 -31.30613 -28.86756 -27.46142 -26.60790 -25.34526 -25.17506 -23.54945 -23.42466 -21.96716 -21.39949 -20.21220 -19.77390 -18.39875 -17.84420 -17.14673 -16.51891 -16.23216 -16.10840 -15.84329 -15.64578 -15.02271 -14.89706 -14.69205 -14.55333 -14.42493 -13.98302 -13.82737 -13.41262 -13.20785 -13.07515 -12.62397 -12.51077 -12.27361 -11.71750 -11.63724 -11.57378 -11.37534 -11.31834 -11.21541 -11.12551 -10.98116 -10.73254 -10.64612 -10.37402 -9.99745 -9.87422 -9.72301 -9.58112 -9.25769 -8.91724 -8.74502 -8.45524 -8.41923 -6.06545 -4.10977 0.53660 0.71041 2.04726 2.46817 2.73481 3.23258 3.30209 3.35348 3.36155 3.37532 3.68194 3.73393 4.18391 4.25829 4.40107 4.48941 4.67896 4.71897 4.76581 4.83330 4.90015 4.97918 5.03370 5.10401 5.19201 5.29190 5.29658 5.34355 5.44207 5.47265 5.50677 5.60745 5.64026 5.67322 5.83742 5.90794 6.15117 6.28963 6.31891 6.35574 6.44001 6.53970 6.65448 6.82719 6.92140 7.42135 7.53337 7.66983 7.74449 7.90498 8.27823 8.94892 9.13537 9.53698 11.04473 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.027832 B = 0.001920 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.802535 B =14578.838151 C =14853.609622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.466 5.466 3 C 0.218 3.782 4 C -0.032 4.032 5 C 0.032 3.968 6 C -0.525 4.525 7 H 0.059 0.941 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.297 5.297 15 N -0.308 5.308 16 C 0.316 3.684 17 N -0.462 5.462 18 C 0.067 3.933 19 C 0.074 3.926 20 N -0.461 5.461 21 C 0.497 3.503 22 N -0.552 5.552 23 C 0.174 3.826 24 C -0.265 4.265 25 C 0.175 3.825 26 N -0.530 5.530 27 C 0.077 3.923 28 C 0.066 3.934 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.026 0.974 35 H 0.014 0.986 36 H 0.262 0.738 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.105 0.895 41 H 0.168 0.832 42 H 0.147 0.853 43 H 0.170 0.830 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 -28.148 -9.047 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.158 5.158 3 C -0.049 4.049 4 C -0.072 4.072 5 C -0.006 4.006 6 C -0.563 4.563 7 H 0.077 0.923 8 C -0.143 4.143 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.201 1.201 14 N -0.137 5.137 15 N -0.152 5.152 16 C -0.041 4.041 17 N -0.188 5.188 18 C -0.061 4.061 19 C -0.052 4.052 20 N -0.181 5.181 21 C 0.141 3.859 22 N -0.272 5.272 23 C 0.007 3.993 24 C -0.289 4.289 25 C 0.007 3.993 26 N -0.248 5.248 27 C -0.051 4.051 28 C -0.062 4.062 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.185 0.815 42 H 0.164 0.836 43 H 0.187 0.813 44 H 0.083 0.917 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.160 -27.070 -8.846 28.653 hybrid contribution -1.923 -0.165 0.114 1.934 sum -5.083 -27.235 -8.732 29.049 Atomic orbital electron populations 1.22014 0.75398 1.05274 1.03595 1.46208 1.08854 1.05985 1.54782 1.25671 0.86310 0.92517 1.00384 1.20469 1.00941 0.82491 1.03318 1.19068 0.97886 0.95914 0.87761 1.21095 1.46623 0.96055 0.92556 0.92309 1.25017 0.95375 0.98319 0.95570 1.69959 1.48875 1.36874 0.97364 0.86604 0.79154 0.84921 0.77008 1.20224 1.21290 1.20060 1.74072 1.17704 1.02010 1.19959 1.74494 1.16969 1.04466 1.19270 1.22001 0.86371 0.87549 1.08150 1.58749 1.59422 0.96295 1.04382 1.22268 1.00459 0.91886 0.91503 1.22309 0.98781 0.93113 0.91001 1.58560 1.55379 0.98066 1.06047 1.21032 0.86773 0.92120 0.85988 1.68399 1.13807 1.16682 1.28300 1.23079 0.92011 0.87769 0.96470 1.22743 1.05427 1.03143 0.97567 1.23125 0.89351 0.90170 0.96620 1.68036 1.23453 1.06269 1.27078 1.22144 0.99779 0.92098 0.91040 1.22299 1.00165 0.92393 0.91351 0.90624 0.89139 0.88575 0.91096 0.89186 0.95599 0.96760 0.92786 0.91325 0.89017 0.92623 0.87708 0.81494 0.83565 0.81275 0.91713 0.88463 0.89349 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.88 59.84 0.65 1.66 16 2 N -0.47 -7.80 3.21 -121.46 -0.39 -8.19 16 3 C 0.22 4.32 7.32 -154.01 -1.13 3.20 16 4 C -0.03 -0.65 5.45 -27.88 -0.15 -0.80 16 5 C 0.03 0.80 4.96 -27.88 -0.14 0.66 16 6 C -0.53 -14.24 9.11 -34.44 -0.31 -14.55 16 7 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 10 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 N -0.30 -6.46 12.18 32.99 0.40 -6.06 16 15 N -0.31 -6.12 12.19 30.32 0.37 -5.75 16 16 C 0.32 5.26 6.45 -318.87 -2.06 3.21 16 17 N -0.46 -6.04 4.71 -174.36 -0.82 -6.86 16 18 C 0.07 0.81 5.53 -3.76 -0.02 0.79 16 19 C 0.07 0.77 5.46 -3.77 -0.02 0.75 16 20 N -0.46 -5.08 4.77 -175.23 -0.84 -5.92 16 21 C 0.50 5.39 7.17 -322.81 -2.31 3.08 16 22 N -0.55 -5.35 8.70 -13.93 -0.12 -5.47 16 23 C 0.17 1.14 11.30 -17.23 -0.19 0.94 16 24 C -0.27 -1.39 10.16 -39.31 -0.40 -1.79 16 25 C 0.18 1.19 11.30 -17.23 -0.19 0.99 16 26 N -0.53 -5.44 9.72 -13.93 -0.14 -5.58 16 27 C 0.08 0.77 4.76 -3.77 -0.02 0.75 16 28 C 0.07 0.75 5.53 -3.76 -0.02 0.73 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 31 H 0.10 1.27 8.05 -51.93 -0.42 0.86 16 32 H 0.07 1.27 7.97 -51.93 -0.41 0.85 16 33 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 1.06 7.64 -51.92 -0.40 0.66 16 41 H 0.17 0.55 8.06 -52.48 -0.42 0.12 16 42 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 43 H 0.17 0.60 8.06 -52.48 -0.42 0.17 16 44 H 0.06 0.65 8.03 -51.93 -0.42 0.24 16 45 H 0.10 0.93 7.81 -51.93 -0.41 0.53 16 46 H 0.09 0.96 8.13 -51.93 -0.42 0.54 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -34.86 391.55 -13.42 -48.28 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.09 Total: -1.96 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -6.42 Total: 1.17 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -0.80 Total: -69.47 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.86 -13.42 -48.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340019694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.398 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds