Wall clock time and date at job start Wed Apr 1 2020 02:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36738 * 127.13644 * 2 1 4 4 C 1.50698 * 126.34773 * 359.97438 * 3 2 1 5 5 C 1.53004 * 109.46718 * 90.00583 * 4 3 2 6 6 C 1.50697 * 109.47130 * 180.02562 * 5 4 3 7 7 H 1.07999 * 120.00024 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00258 * 179.72383 * 6 5 4 9 9 N 1.31518 * 120.00226 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00368 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46902 * 59.99740 * 10 8 6 12 12 H 1.48502 * 109.47285 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47355 * 300.00322 * 10 8 6 14 14 N 1.30298 * 107.30557 * 180.26290 * 3 2 1 15 15 N 1.28531 * 110.05256 * 359.55947 * 14 3 2 16 16 C 1.31215 * 109.86085 * 0.44964 * 15 14 3 17 17 N 1.38578 * 126.47578 * 179.72836 * 16 15 14 18 18 C 1.46961 * 110.99731 * 61.97106 * 17 16 15 19 19 C 1.53049 * 109.36102 * 176.81065 * 18 17 16 20 20 N 1.46961 * 109.36458 * 58.40681 * 19 18 17 21 21 C 1.38406 * 110.99876 * 176.80753 * 20 19 18 22 22 N 1.32498 * 119.21472 * 123.52823 * 21 20 19 23 23 C 1.32277 * 120.73567 * 179.71910 * 22 21 20 24 24 C 1.38601 * 119.19695 * 0.54128 * 23 22 21 25 25 C 1.38599 * 118.55942 * 359.73491 * 24 23 22 26 26 N 1.32271 * 119.19873 * 359.97438 * 25 24 23 27 27 C 1.46953 * 110.87561 * 300.67371 * 20 19 18 28 28 C 1.46955 * 110.99821 * 298.17455 * 17 16 15 29 29 H 1.09000 * 109.47252 * 85.38212 * 1 2 3 30 30 H 1.08999 * 109.47044 * 205.37903 * 1 2 3 31 31 H 1.08995 * 109.47273 * 325.38454 * 1 2 3 32 32 H 1.08994 * 109.47615 * 330.00556 * 4 3 2 33 33 H 1.08999 * 109.47698 * 209.99863 * 4 3 2 34 34 H 1.08996 * 109.47783 * 59.99942 * 5 4 3 35 35 H 1.09000 * 109.47151 * 299.99797 * 5 4 3 36 36 H 0.96995 * 120.00613 * 180.02562 * 9 8 6 37 37 H 1.08992 * 109.48854 * 296.78245 * 18 17 16 38 38 H 1.09001 * 109.48331 * 56.84849 * 18 17 16 39 39 H 1.09000 * 109.49196 * 298.43128 * 19 18 17 40 40 H 1.09009 * 109.50275 * 178.37993 * 19 18 17 41 41 H 1.08006 * 120.39724 * 180.25555 * 23 22 21 42 42 H 1.08000 * 120.71642 * 179.71345 * 24 23 22 43 43 H 1.08003 * 120.39911 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.49606 * 299.35401 * 27 20 19 45 45 H 1.08999 * 109.50598 * 179.29909 * 27 20 19 46 46 H 1.08993 * 109.49103 * 303.15385 * 28 17 16 47 47 H 1.09001 * 109.48918 * 63.21995 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 -0.0005 5 6 1.7167 3.0242 1.4418 6 6 1.2877 4.4688 1.4414 7 1 1.1345 4.9863 0.5060 8 6 1.0858 5.1284 2.6352 9 7 1.2671 4.4967 3.7744 10 14 0.5547 6.9193 2.6347 11 1 -0.7450 7.0499 1.9283 12 1 0.4065 7.3921 4.0346 13 1 1.5798 7.7394 1.9406 14 7 3.5162 0.6481 -0.0057 15 7 3.5212 -0.6372 0.0000 16 6 2.2888 -1.0878 0.0000 17 7 1.8978 -2.4173 0.0000 18 6 2.3677 -3.1045 1.2111 19 6 1.8492 -4.5444 1.2110 20 7 2.3221 -5.2325 0.0015 21 6 1.9315 -6.5603 0.0016 22 7 1.2231 -7.0261 -1.0166 23 6 0.8387 -8.2913 -1.0501 24 6 1.1762 -9.1286 0.0017 25 6 1.9131 -8.6072 1.0534 26 7 2.2707 -7.3342 1.0221 27 6 1.8521 -4.5453 -1.2094 28 6 2.3706 -3.1053 -1.2094 29 1 -0.3634 0.0827 -1.0243 30 1 -0.3633 -0.9285 0.4405 31 1 -0.3633 0.8457 0.5837 32 1 0.9057 2.6301 -0.5146 33 1 2.6122 3.1362 -0.5142 34 1 2.6731 2.9290 1.9560 35 1 0.9666 2.4230 1.9556 36 1 1.1248 4.9605 4.6143 37 1 3.4575 -3.1103 1.2261 38 1 1.9943 -2.5835 2.0928 39 1 0.7593 -4.5386 1.2235 40 1 2.2203 -5.0649 2.0940 41 1 0.2649 -8.6663 -1.8848 42 1 0.8711 -10.1646 0.0018 43 1 2.1920 -9.2329 1.8884 44 1 0.7623 -4.5394 -1.2245 45 1 2.2251 -5.0661 -2.0913 46 1 1.9993 -2.5851 -2.0923 47 1 3.4605 -3.1112 -1.2218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340019694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:28 Heat of formation + Delta-G solvation = 141.856013 kcal Electronic energy + Delta-G solvation = -29253.885454 eV Core-core repulsion = 25280.398472 eV Total energy + Delta-G solvation = -3973.486982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.05266 -42.25459 -40.26627 -37.05364 -36.35422 -35.54373 -34.75728 -33.66224 -32.29831 -32.19061 -30.31984 -28.67124 -27.72757 -26.96735 -25.98684 -24.34461 -24.14846 -23.77430 -22.61135 -21.62112 -20.92522 -19.17623 -18.62855 -18.45928 -18.14536 -17.44940 -17.21641 -16.57798 -16.50629 -16.47321 -16.01406 -15.69063 -15.49668 -15.42466 -15.10004 -14.89534 -14.54151 -14.36750 -14.28949 -14.19066 -13.68870 -13.49633 -13.21500 -12.83218 -12.77876 -12.57483 -12.52301 -12.49445 -12.44426 -12.07863 -11.94258 -11.84137 -11.79318 -11.62040 -11.31921 -11.20656 -11.07696 -10.55807 -10.17390 -10.05820 -10.00771 -9.45871 -8.19589 -6.31928 -0.01864 0.20633 0.65271 1.20238 1.44182 1.47403 1.54850 1.71285 2.04344 2.42688 2.55167 2.79709 3.14705 3.18025 3.42177 3.50261 3.68574 3.80174 3.83175 3.84653 3.98154 4.01115 4.06435 4.17482 4.24712 4.31292 4.36070 4.39049 4.42474 4.60903 4.63217 4.66987 4.67390 4.71312 4.81867 4.84460 4.87474 4.91464 5.06342 5.29858 5.33049 5.44217 5.48823 5.57393 5.59362 5.71937 5.79031 6.11830 6.17510 6.25629 6.83942 7.14935 7.38104 7.65186 8.92249 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.027832 B = 0.001920 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.802535 B =14578.838151 C =14853.609622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.462 5.462 3 C 0.204 3.796 4 C -0.015 4.015 5 C 0.042 3.958 6 C -0.539 4.539 7 H 0.074 0.926 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.969 3.031 11 H -0.260 1.260 12 H -0.288 1.288 13 H -0.268 1.268 14 N -0.333 5.333 15 N -0.342 5.342 16 C 0.335 3.665 17 N -0.451 5.451 18 C 0.070 3.930 19 C 0.089 3.911 20 N -0.477 5.477 21 C 0.474 3.526 22 N -0.570 5.570 23 C 0.161 3.839 24 C -0.246 4.246 25 C 0.160 3.840 26 N -0.559 5.559 27 C 0.092 3.908 28 C 0.069 3.931 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.090 0.910 34 H -0.018 1.018 35 H -0.004 1.004 36 H 0.263 0.737 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.200 0.800 42 H 0.184 0.816 43 H 0.198 0.802 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.168 -29.818 -10.464 32.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.154 5.154 3 C -0.064 4.064 4 C -0.055 4.055 5 C 0.004 3.996 6 C -0.577 4.577 7 H 0.092 0.908 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.793 3.207 11 H -0.185 1.185 12 H -0.214 1.214 13 H -0.193 1.193 14 N -0.174 5.174 15 N -0.186 5.186 16 C -0.022 4.022 17 N -0.178 5.178 18 C -0.057 4.057 19 C -0.037 4.037 20 N -0.197 5.197 21 C 0.118 3.882 22 N -0.290 5.290 23 C -0.005 4.005 24 C -0.268 4.268 25 C -0.006 4.006 26 N -0.278 5.278 27 C -0.035 4.035 28 C -0.058 4.058 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.000 1.000 35 H 0.014 0.986 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.124 0.876 41 H 0.216 0.784 42 H 0.202 0.798 43 H 0.215 0.785 44 H 0.086 0.914 45 H 0.120 0.880 46 H 0.116 0.884 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.419 -28.779 -10.287 31.039 hybrid contribution -1.253 0.110 0.563 1.378 sum -6.672 -28.669 -9.724 30.999 Atomic orbital electron populations 1.22341 0.72778 1.05995 1.05605 1.46391 1.10292 1.05022 1.53696 1.25437 0.86530 0.92970 1.01500 1.20178 1.02469 0.82815 1.00049 1.18839 0.94794 0.95539 0.90422 1.21565 1.45939 0.96960 0.93210 0.90825 1.26006 0.95400 1.03261 0.95156 1.70114 1.50292 1.38957 0.98102 0.85446 0.79372 0.78890 0.77010 1.18496 1.21412 1.19294 1.73964 1.19233 1.03137 1.21031 1.74418 1.18968 1.03908 1.21326 1.22349 0.85669 0.88857 1.05359 1.59023 1.58767 0.94644 1.05369 1.22236 0.99332 0.93175 0.91000 1.22118 0.98788 0.91459 0.91354 1.58550 1.56305 0.98786 1.06043 1.21004 0.88229 0.91909 0.87028 1.68379 1.14156 1.18439 1.28056 1.23740 0.91888 0.86984 0.97874 1.23151 1.03172 1.04563 0.95962 1.23744 0.89301 0.89403 0.98122 1.68012 1.24445 1.07880 1.27480 1.21984 0.99695 0.90660 0.91163 1.22332 0.99147 0.93481 0.90824 0.87649 0.87254 0.89314 0.88201 0.89200 0.99957 0.98576 0.92821 0.93234 0.89358 0.92128 0.87578 0.78371 0.79832 0.78498 0.91386 0.87961 0.88439 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.73 10.88 127.77 1.39 3.12 16 2 N -0.46 -15.35 3.21 -538.20 -1.73 -17.08 16 3 C 0.20 8.23 7.32 137.64 1.01 9.24 16 4 C -0.02 -0.63 5.45 29.85 0.16 -0.46 16 5 C 0.04 2.20 4.96 29.85 0.15 2.35 16 6 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 7 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 9 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 10 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 N -0.33 -15.02 12.18 -49.54 -0.60 -15.63 16 15 N -0.34 -14.10 12.19 -58.00 -0.71 -14.80 16 16 C 0.33 11.27 6.45 260.11 1.68 12.95 16 17 N -0.45 -11.70 4.71 -705.54 -3.32 -15.02 16 18 C 0.07 1.75 5.53 86.31 0.48 2.23 16 19 C 0.09 1.85 5.46 86.31 0.47 2.32 16 20 N -0.48 -10.40 4.77 -708.30 -3.38 -13.78 16 21 C 0.47 9.92 7.17 261.49 1.88 11.79 16 22 N -0.57 -10.15 8.70 -197.98 -1.72 -11.87 16 23 C 0.16 1.66 11.30 84.71 0.96 2.62 16 24 C -0.25 -1.76 10.16 22.44 0.23 -1.53 16 25 C 0.16 1.83 11.30 84.71 0.96 2.78 16 26 N -0.56 -10.97 9.72 -197.99 -1.92 -12.89 16 27 C 0.09 1.79 4.76 86.31 0.41 2.20 16 28 C 0.07 1.58 5.53 86.31 0.48 2.06 16 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 2.15 8.12 -2.39 -0.02 2.13 16 31 H 0.09 2.26 8.05 -2.39 -0.02 2.24 16 32 H 0.10 3.43 7.97 -2.39 -0.02 3.41 16 33 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 34 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 35 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 2.24 8.13 -2.39 -0.02 2.22 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.11 2.16 7.64 -2.38 -0.02 2.15 16 41 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16 42 H 0.18 -0.12 8.06 -2.91 -0.02 -0.15 16 43 H 0.20 0.86 8.06 -2.91 -0.02 0.84 16 44 H 0.07 1.28 8.03 -2.39 -0.02 1.26 16 45 H 0.10 1.89 7.81 -2.39 -0.02 1.87 16 46 H 0.10 2.03 8.13 -2.39 -0.02 2.01 16 47 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -78.68 391.55 0.83 -77.85 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.97 Total: 11.39 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 10.94 Total: 23.00 kcal Atomic # 7 Polarization: -144.26 SS G_CDS: -13.10 Total: -157.36 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -78.68 0.83 -77.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340019694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.703 kcal (2) G-P(sol) polarization free energy of solvation -78.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds