Wall clock time and date at job start Wed Apr 1 2020 02:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00002 * 2 1 4 4 N 1.46504 * 109.46837 * 125.00154 * 3 2 1 5 5 C 1.37736 * 127.15733 * 86.08125 * 4 3 2 6 6 C 1.47323 * 126.48561 * 359.71261 * 5 4 3 7 7 N 1.32007 * 126.18757 * 0.02963 * 6 5 4 8 8 C 1.32927 * 109.77632 * 179.97438 * 7 6 5 9 9 N 1.30793 * 109.39370 * 359.97438 * 8 7 6 10 10 N 1.36026 * 126.19149 * 179.71467 * 6 5 4 11 11 C 1.46495 * 126.92794 * 0.02562 * 10 6 5 12 12 N 1.31424 * 107.03144 * 179.97438 * 5 4 3 13 13 N 1.28520 * 109.89011 * 359.97438 * 12 5 4 14 14 C 1.31531 * 110.09057 * 359.97438 * 13 12 5 15 15 N 1.38250 * 126.34710 * 179.97438 * 14 13 12 16 16 C 1.46846 * 110.99450 * 62.52660 * 15 14 13 17 17 C 1.53045 * 109.52111 * 174.16055 * 16 15 14 18 18 C 1.53121 * 109.27423 * 59.17483 * 17 16 15 19 19 C 1.50699 * 109.51935 * 182.44047 * 18 17 16 20 20 H 1.08001 * 120.00347 * 119.69054 * 19 18 17 21 21 C 1.37886 * 120.00352 * 299.68510 * 19 18 17 22 22 N 1.31511 * 119.99588 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00212 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47012 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47171 * 120.00090 * 23 21 19 26 26 H 1.48499 * 109.47064 * 240.00171 * 23 21 19 27 27 C 1.53110 * 109.16651 * 302.34709 * 18 17 16 28 28 C 1.46849 * 110.99945 * 298.31574 * 15 14 13 29 29 H 1.07997 * 120.00453 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00071 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00075 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46784 * 5.01056 * 3 2 1 33 33 H 1.08992 * 109.47843 * 245.00433 * 3 2 1 34 34 H 1.07989 * 125.30285 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.46919 * 90.00042 * 11 10 6 36 36 H 1.09003 * 109.47608 * 209.99685 * 11 10 6 37 37 H 1.08993 * 109.47472 * 330.00231 * 11 10 6 38 38 H 1.08994 * 109.46407 * 294.17350 * 16 15 14 39 39 H 1.08993 * 109.46694 * 54.14789 * 16 15 14 40 40 H 1.09004 * 109.50019 * 299.24208 * 17 16 15 41 41 H 1.08989 * 109.50274 * 179.12016 * 17 16 15 42 42 H 1.09000 * 109.52212 * 62.25741 * 18 17 16 43 43 H 0.97001 * 119.99640 * 179.97438 * 22 21 19 44 44 H 1.09004 * 109.50689 * 297.71455 * 27 18 17 45 45 H 1.09006 * 109.50733 * 177.59375 * 27 18 17 46 46 H 1.08995 * 109.46063 * 305.85218 * 28 15 14 47 47 H 1.09000 * 109.46221 * 65.82411 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.2759 0.8300 1.1663 6 6 4.9813 0.1515 0.0651 7 7 4.4983 -0.0871 -1.1400 8 6 5.4108 -0.7164 -1.8738 9 7 6.4933 -0.8944 -1.1617 10 7 6.2502 -0.3371 0.1044 11 6 7.1755 -0.2933 1.2392 12 7 4.7491 1.0660 2.3694 13 7 3.8634 1.6719 3.0766 14 6 2.7712 1.8603 2.3682 15 7 1.6117 2.4779 2.7988 16 6 1.8628 3.8810 3.1517 17 6 0.5371 4.5701 3.4830 18 6 -0.1327 3.8422 4.6519 19 6 -1.4668 4.4794 4.9438 20 1 -2.3721 3.8952 4.8696 21 6 -1.5317 5.8083 5.3059 22 7 -0.4294 6.5198 5.3959 23 14 -3.1853 6.5979 5.6685 24 1 -4.2631 5.5908 5.4964 25 1 -3.1972 7.1027 7.0650 26 1 -3.4103 7.7279 4.7317 27 6 -0.3390 2.3722 4.2767 28 6 1.0121 1.7468 3.9224 29 1 -0.5401 0.9352 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0898 33 1 2.6212 1.4028 -0.9313 34 1 5.2791 -1.0307 -2.8985 35 1 7.0461 -1.1879 1.8483 36 1 8.2005 -0.2496 0.8709 37 1 6.9685 0.5903 1.8429 38 1 2.5216 3.9251 4.0189 39 1 2.3354 4.3881 2.3106 40 1 -0.1172 4.5385 2.6117 41 1 0.7254 5.6073 3.7600 42 1 0.5039 3.9071 5.5343 43 1 -0.4751 7.4548 5.6502 44 1 -1.0070 2.3060 3.4179 45 1 -0.7766 1.8390 5.1208 46 1 0.8669 0.7038 3.6409 47 1 1.6749 1.8009 4.7860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340621094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:15 Heat of formation + Delta-G solvation = 206.444298 kcal Electronic energy + Delta-G solvation = -30390.668110 eV Core-core repulsion = 26419.981886 eV Total energy + Delta-G solvation = -3970.686224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.12916 -42.15400 -38.43745 -36.29258 -34.43818 -34.12116 -33.01357 -32.26733 -31.28136 -30.05197 -29.13322 -27.60918 -26.96652 -25.77904 -23.81387 -22.91999 -22.32632 -22.17459 -20.98191 -20.75734 -19.90839 -18.69198 -17.72998 -17.00524 -16.69229 -16.49236 -15.98711 -15.87107 -15.65206 -14.95141 -14.60120 -14.57044 -14.20526 -13.70703 -13.55211 -13.47561 -13.40069 -12.87642 -12.64430 -12.53594 -12.46050 -12.29616 -11.68564 -11.67190 -11.62818 -11.11483 -10.98051 -10.82780 -10.69167 -10.54819 -10.47280 -10.34762 -10.26743 -10.12922 -10.02054 -9.66671 -9.60287 -9.13825 -8.88001 -8.80664 -8.43749 -8.36325 -6.03027 -4.08403 0.60014 1.51910 1.81117 1.97906 2.41504 2.52377 2.92133 3.27331 3.27544 3.36298 3.39504 3.96196 4.14304 4.32859 4.41129 4.60645 4.72948 4.91234 4.95498 5.04011 5.13679 5.26661 5.28308 5.34157 5.45173 5.56944 5.67690 5.71040 5.83735 5.88105 5.91809 6.03186 6.08432 6.09724 6.20437 6.35259 6.38038 6.42613 6.45365 6.57199 6.70428 6.85287 6.97849 7.26527 7.31296 7.48962 7.62771 7.70487 7.93853 8.04712 8.39837 8.45492 8.95306 9.56669 11.03431 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.021566 B = 0.002648 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.029390 B =10572.432604 C =11260.716226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.172 4.172 3 C 0.140 3.860 4 N -0.432 5.432 5 C 0.213 3.787 6 C 0.363 3.637 7 N -0.527 5.527 8 C 0.204 3.796 9 N -0.308 5.308 10 N -0.351 5.351 11 C 0.093 3.907 12 N -0.252 5.252 13 N -0.304 5.304 14 C 0.392 3.608 15 N -0.465 5.465 16 C 0.068 3.932 17 C -0.103 4.103 18 C 0.046 3.954 19 C -0.510 4.510 20 H 0.056 0.944 21 C 0.061 3.939 22 N -0.891 5.891 23 Si 0.890 3.110 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.104 4.104 28 C 0.073 3.927 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.223 0.777 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.046 0.954 41 H 0.101 0.899 42 H 0.026 0.974 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.887 -13.333 -13.064 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.191 4.191 3 C 0.018 3.982 4 N -0.123 5.123 5 C -0.053 4.053 6 C 0.087 3.913 7 N -0.257 5.257 8 C -0.099 4.099 9 N -0.137 5.137 10 N -0.142 5.142 11 C -0.049 4.049 12 N -0.099 5.099 13 N -0.150 5.150 14 C 0.036 3.964 15 N -0.193 5.193 16 C -0.058 4.058 17 C -0.141 4.141 18 C 0.028 3.972 19 C -0.548 4.548 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.142 4.142 28 C -0.053 4.053 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.240 0.760 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.119 0.881 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.921 -13.378 -12.590 21.372 hybrid contribution -1.165 0.442 -0.206 1.263 sum 9.756 -12.936 -12.796 20.646 Atomic orbital electron populations 1.23981 0.95474 1.02691 0.96998 1.22839 0.96031 0.97434 1.02817 1.21167 0.91658 0.98189 0.87143 1.46339 1.11626 1.41593 1.12706 1.20345 0.84779 1.06004 0.94148 1.20048 0.83928 0.96211 0.91093 1.70710 1.31947 1.21855 1.01139 1.25921 0.86463 0.96486 1.00994 1.78132 1.23940 1.21371 0.90288 1.50489 1.10900 1.41465 1.11383 1.22254 0.92513 1.05564 0.84567 1.74328 1.23519 1.13095 0.98967 1.74854 0.98790 1.16948 1.24427 1.22719 0.93685 0.97098 0.82868 1.58925 1.17271 1.04153 1.38923 1.22458 1.01239 0.83037 0.99058 1.21752 0.91481 1.01913 0.98975 1.18721 0.96252 0.88574 0.93697 1.21190 0.92684 0.95241 1.45721 0.92581 1.24968 0.96264 0.97422 0.95333 1.69863 1.26500 1.08253 1.48348 0.86576 0.84430 0.79337 0.77879 1.19830 1.21113 1.21104 1.21724 0.93002 0.99231 1.00267 1.22234 0.97584 0.95868 0.89630 0.87556 0.87935 0.87226 0.87240 0.86776 0.76035 0.89709 0.88837 0.87095 0.93426 0.92448 0.93505 0.88092 0.95554 0.93036 0.92194 0.92222 0.92219 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 14.32 29.02 0.42 -1.11 16 2 C -0.17 -1.89 9.85 -36.02 -0.35 -2.24 16 3 C 0.14 1.65 6.14 -5.19 -0.03 1.62 16 4 N -0.43 -6.20 2.82 -116.11 -0.33 -6.53 16 5 C 0.21 3.08 7.86 -153.71 -1.21 1.87 16 6 C 0.36 4.67 7.83 -154.82 -1.21 3.46 16 7 N -0.53 -6.20 9.55 -12.47 -0.12 -6.32 16 8 C 0.20 2.00 13.00 -92.02 -1.20 0.81 16 9 N -0.31 -3.48 12.69 29.24 0.37 -3.11 16 10 N -0.35 -4.07 4.09 -65.60 -0.27 -4.34 16 11 C 0.09 0.80 11.13 59.84 0.67 1.46 16 12 N -0.25 -3.98 10.35 32.52 0.34 -3.64 16 13 N -0.30 -5.35 12.18 30.28 0.37 -4.98 16 14 C 0.39 6.49 6.39 -319.14 -2.04 4.45 16 15 N -0.47 -7.96 4.64 -174.61 -0.81 -8.77 16 16 C 0.07 1.27 5.38 -3.83 -0.02 1.25 16 17 C -0.10 -2.24 5.12 -26.65 -0.14 -2.37 16 18 C 0.05 1.07 2.16 -91.65 -0.20 0.87 16 19 C -0.51 -13.22 8.56 -34.44 -0.29 -13.51 16 20 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.62 5.31 -17.82 -0.09 1.53 16 22 N -0.89 -24.36 11.37 55.43 0.63 -23.73 16 23 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.10 -2.00 5.32 -26.66 -0.14 -2.15 16 28 C 0.07 1.27 5.37 -3.83 -0.02 1.25 16 29 H 0.11 1.05 7.84 -52.49 -0.41 0.64 16 30 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.11 1.29 7.77 -51.93 -0.40 0.88 16 33 H 0.11 1.27 6.90 -51.93 -0.36 0.91 16 34 H 0.22 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.11 1.04 6.58 -51.93 -0.34 0.70 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.02 8.10 -51.93 -0.42 0.59 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.10 2.48 6.17 -51.94 -0.32 2.16 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -29.67 389.11 -11.71 -41.38 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.87 Total: 1.45 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -5.87 Total: -2.82 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.18 Total: -61.42 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.67 -11.71 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340621094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.828 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 206.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds