Wall clock time and date at job start Wed Apr 1 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00002 * 2 1 4 4 N 1.46504 * 109.46837 * 125.00154 * 3 2 1 5 5 C 1.37736 * 127.15733 * 86.08125 * 4 3 2 6 6 C 1.47323 * 126.48561 * 359.71261 * 5 4 3 7 7 N 1.32007 * 126.18757 * 0.02963 * 6 5 4 8 8 C 1.32927 * 109.77632 * 179.97438 * 7 6 5 9 9 N 1.30793 * 109.39370 * 359.97438 * 8 7 6 10 10 N 1.36026 * 126.19149 * 179.71467 * 6 5 4 11 11 C 1.46495 * 126.92794 * 0.02562 * 10 6 5 12 12 N 1.31424 * 107.03144 * 179.97438 * 5 4 3 13 13 N 1.28520 * 109.89011 * 359.97438 * 12 5 4 14 14 C 1.31531 * 110.09057 * 359.97438 * 13 12 5 15 15 N 1.38250 * 126.34710 * 179.97438 * 14 13 12 16 16 C 1.46846 * 110.99450 * 62.52660 * 15 14 13 17 17 C 1.53045 * 109.52111 * 174.16055 * 16 15 14 18 18 C 1.53121 * 109.27423 * 59.17483 * 17 16 15 19 19 C 1.50699 * 109.51935 * 182.44047 * 18 17 16 20 20 H 1.08001 * 120.00347 * 119.69054 * 19 18 17 21 21 C 1.37886 * 120.00352 * 299.68510 * 19 18 17 22 22 N 1.31511 * 119.99588 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00212 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47012 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47171 * 120.00090 * 23 21 19 26 26 H 1.48499 * 109.47064 * 240.00171 * 23 21 19 27 27 C 1.53110 * 109.16651 * 302.34709 * 18 17 16 28 28 C 1.46849 * 110.99945 * 298.31574 * 15 14 13 29 29 H 1.07997 * 120.00453 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00071 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00075 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46784 * 5.01056 * 3 2 1 33 33 H 1.08992 * 109.47843 * 245.00433 * 3 2 1 34 34 H 1.07989 * 125.30285 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.46919 * 90.00042 * 11 10 6 36 36 H 1.09003 * 109.47608 * 209.99685 * 11 10 6 37 37 H 1.08993 * 109.47472 * 330.00231 * 11 10 6 38 38 H 1.08994 * 109.46407 * 294.17350 * 16 15 14 39 39 H 1.08993 * 109.46694 * 54.14789 * 16 15 14 40 40 H 1.09004 * 109.50019 * 299.24208 * 17 16 15 41 41 H 1.08989 * 109.50274 * 179.12016 * 17 16 15 42 42 H 1.09000 * 109.52212 * 62.25741 * 18 17 16 43 43 H 0.97001 * 119.99640 * 179.97438 * 22 21 19 44 44 H 1.09004 * 109.50689 * 297.71455 * 27 18 17 45 45 H 1.09006 * 109.50733 * 177.59375 * 27 18 17 46 46 H 1.08995 * 109.46063 * 305.85218 * 28 15 14 47 47 H 1.09000 * 109.46221 * 65.82411 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.2759 0.8300 1.1663 6 6 4.9813 0.1515 0.0651 7 7 4.4983 -0.0871 -1.1400 8 6 5.4108 -0.7164 -1.8738 9 7 6.4933 -0.8944 -1.1617 10 7 6.2502 -0.3371 0.1044 11 6 7.1755 -0.2933 1.2392 12 7 4.7491 1.0660 2.3694 13 7 3.8634 1.6719 3.0766 14 6 2.7712 1.8603 2.3682 15 7 1.6117 2.4779 2.7988 16 6 1.8628 3.8810 3.1517 17 6 0.5371 4.5701 3.4830 18 6 -0.1327 3.8422 4.6519 19 6 -1.4668 4.4794 4.9438 20 1 -2.3721 3.8952 4.8696 21 6 -1.5317 5.8083 5.3059 22 7 -0.4294 6.5198 5.3959 23 14 -3.1853 6.5979 5.6685 24 1 -4.2631 5.5908 5.4964 25 1 -3.1972 7.1027 7.0650 26 1 -3.4103 7.7279 4.7317 27 6 -0.3390 2.3722 4.2767 28 6 1.0121 1.7468 3.9224 29 1 -0.5401 0.9352 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0898 33 1 2.6212 1.4028 -0.9313 34 1 5.2791 -1.0307 -2.8985 35 1 7.0461 -1.1879 1.8483 36 1 8.2005 -0.2496 0.8709 37 1 6.9685 0.5903 1.8429 38 1 2.5216 3.9251 4.0189 39 1 2.3354 4.3881 2.3106 40 1 -0.1172 4.5385 2.6117 41 1 0.7254 5.6073 3.7600 42 1 0.5039 3.9071 5.5343 43 1 -0.4751 7.4548 5.6502 44 1 -1.0070 2.3060 3.4179 45 1 -0.7766 1.8390 5.1208 46 1 0.8669 0.7038 3.6409 47 1 1.6749 1.8009 4.7860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340621094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:14 Heat of formation + Delta-G solvation = 193.693390 kcal Electronic energy + Delta-G solvation = -30391.221031 eV Core-core repulsion = 26419.981886 eV Total energy + Delta-G solvation = -3971.239145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.29841 -43.03972 -39.96006 -37.30088 -35.94631 -35.14619 -33.97814 -33.66869 -32.66584 -31.64986 -30.36062 -28.47879 -27.98654 -27.46405 -24.86572 -24.46075 -23.90367 -23.17414 -22.06192 -21.92665 -20.81402 -20.31878 -18.85696 -18.37896 -17.97984 -17.74611 -17.31675 -16.87524 -16.60227 -16.46816 -15.85738 -15.60282 -15.40848 -15.07696 -14.62132 -14.60848 -14.39891 -14.22040 -14.20901 -14.11409 -13.48871 -13.24551 -13.19216 -12.91931 -12.78480 -12.70355 -12.54929 -12.37960 -12.14581 -12.01717 -11.95184 -11.65095 -11.41022 -11.35418 -11.18741 -10.90410 -10.86855 -10.71202 -10.48889 -10.37171 -9.98240 -9.89625 -8.04514 -6.16565 -0.41889 0.52377 0.76037 1.14159 1.35565 1.43754 1.47111 1.56664 1.56981 1.93525 2.26560 2.47666 2.70468 3.23853 3.28196 3.53066 3.60964 3.81857 3.86428 4.00696 4.15232 4.18552 4.24255 4.32784 4.37054 4.42300 4.46353 4.57265 4.60646 4.68481 4.70601 4.76686 4.89611 4.98483 5.01858 5.03242 5.12424 5.23963 5.28724 5.30193 5.43809 5.55152 5.62473 5.64132 5.72090 5.74415 6.01572 6.12816 6.18322 6.42506 6.77634 6.94948 7.24524 7.51528 9.00602 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.021566 B = 0.002648 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.029390 B =10572.432604 C =11260.716226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.183 4.183 3 C 0.139 3.861 4 N -0.426 5.426 5 C 0.227 3.773 6 C 0.342 3.658 7 N -0.529 5.529 8 C 0.207 3.793 9 N -0.319 5.319 10 N -0.351 5.351 11 C 0.088 3.912 12 N -0.265 5.265 13 N -0.329 5.329 14 C 0.379 3.621 15 N -0.455 5.455 16 C 0.083 3.917 17 C -0.090 4.090 18 C 0.042 3.958 19 C -0.525 4.525 20 H 0.056 0.944 21 C 0.013 3.987 22 N -0.917 5.917 23 Si 0.950 3.050 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.282 1.282 27 C -0.093 4.093 28 C 0.082 3.918 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.070 0.930 42 H -0.009 1.009 43 H 0.259 0.741 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.522 -14.922 -15.001 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.202 4.202 3 C 0.019 3.981 4 N -0.116 5.116 5 C -0.040 4.040 6 C 0.066 3.934 7 N -0.259 5.259 8 C -0.094 4.094 9 N -0.148 5.148 10 N -0.143 5.143 11 C -0.053 4.053 12 N -0.111 5.111 13 N -0.176 5.176 14 C 0.022 3.978 15 N -0.182 5.182 16 C -0.044 4.044 17 C -0.128 4.128 18 C 0.024 3.976 19 C -0.563 4.563 20 H 0.074 0.926 21 C -0.185 4.185 22 N -0.557 5.557 23 Si 0.776 3.224 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.208 1.208 27 C -0.130 4.130 28 C -0.045 4.045 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.278 0.722 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.010 0.990 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.557 -14.985 -14.535 23.393 hybrid contribution -0.987 0.865 0.318 1.350 sum 9.570 -14.120 -14.217 22.206 Atomic orbital electron populations 1.24151 0.95113 1.03556 0.95077 1.22720 0.96292 0.96643 1.04520 1.21344 0.91449 0.98868 0.86452 1.46461 1.11894 1.40801 1.12462 1.20615 0.84586 1.04671 0.94093 1.19942 0.84699 0.97522 0.91268 1.70713 1.32533 1.21843 1.00835 1.26746 0.85360 0.95170 1.02159 1.78134 1.24731 1.21696 0.90241 1.50738 1.10720 1.40806 1.12010 1.22427 0.93162 1.05584 0.84103 1.74294 1.23358 1.13840 0.99615 1.74781 0.99484 1.17688 1.25620 1.22492 0.93301 0.98268 0.83718 1.58804 1.17737 1.03155 1.38457 1.22147 0.99076 0.84335 0.98841 1.21459 0.92811 1.00356 0.98207 1.18687 0.94660 0.91369 0.92895 1.21550 0.93720 0.95564 1.45438 0.92599 1.25694 0.99272 0.98114 0.95430 1.70005 1.28251 1.08361 1.49117 0.85633 0.80876 0.78472 0.77410 1.19026 1.21216 1.20845 1.21547 0.94275 0.96567 1.00655 1.22112 0.96155 0.96758 0.89449 0.87397 0.86346 0.87669 0.87168 0.86030 0.72159 0.88653 0.86718 0.88087 0.95151 0.91219 0.93560 0.91198 0.99039 0.93171 0.91540 0.91689 0.90061 0.94672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 14.32 67.79 0.97 -1.47 16 2 C -0.18 -3.64 9.85 25.65 0.25 -3.39 16 3 C 0.14 3.06 6.14 85.63 0.53 3.58 16 4 N -0.43 -11.78 2.82 -521.28 -1.47 -13.25 16 5 C 0.23 6.37 7.86 135.96 1.07 7.44 16 6 C 0.34 8.30 7.83 136.35 1.07 9.37 16 7 N -0.53 -11.33 9.55 -193.36 -1.85 -13.17 16 8 C 0.21 3.50 13.00 180.84 2.35 5.85 16 9 N -0.32 -6.47 12.69 -61.39 -0.78 -7.25 16 10 N -0.35 -7.59 4.09 -361.46 -1.48 -9.06 16 11 C 0.09 1.41 11.13 127.77 1.42 2.83 16 12 N -0.26 -8.29 10.35 -51.01 -0.53 -8.82 16 13 N -0.33 -11.61 12.18 -58.13 -0.71 -12.32 16 14 C 0.38 12.33 6.39 260.20 1.66 13.99 16 15 N -0.45 -15.34 4.64 -706.35 -3.28 -18.62 16 16 C 0.08 3.15 5.38 86.33 0.46 3.61 16 17 C -0.09 -4.00 5.12 30.65 0.16 -3.84 16 18 C 0.04 2.01 2.16 -11.46 -0.02 1.98 16 19 C -0.52 -27.45 8.56 25.60 0.22 -27.23 16 20 H 0.06 2.86 7.74 -2.91 -0.02 2.84 16 21 C 0.01 0.71 5.31 84.66 0.45 1.16 16 22 N -0.92 -51.46 11.37 21.45 0.24 -51.21 16 23 Si 0.95 42.36 29.54 68.60 2.03 44.39 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 C -0.09 -3.51 5.32 30.64 0.16 -3.35 16 28 C 0.08 2.79 5.37 86.33 0.46 3.25 16 29 H 0.11 1.86 7.84 -2.91 -0.02 1.83 16 30 H 0.12 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.11 2.22 8.06 -2.91 -0.02 2.19 16 32 H 0.11 2.41 7.77 -2.39 -0.02 2.40 16 33 H 0.12 2.48 6.90 -2.39 -0.02 2.47 16 34 H 0.26 1.86 8.06 -2.92 -0.02 1.83 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.85 6.58 -2.39 -0.02 1.84 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 2.47 8.10 -2.39 -0.02 2.45 16 40 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.07 3.57 6.17 -2.39 -0.01 3.56 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 44 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 46 H 0.08 2.45 8.10 -2.39 -0.02 2.44 16 47 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -64.30 389.11 4.37 -59.92 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.97 Total: 15.59 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 11.21 Total: 13.80 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -9.84 Total: -133.70 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -64.30 4.37 -59.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340621094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.618 kcal (2) G-P(sol) polarization free energy of solvation -64.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds