Wall clock time and date at job start Wed Apr 1 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 114.00271 * 2 1 4 4 C 1.52998 * 109.47223 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47284 * 64.99897 * 4 3 2 6 6 C 1.42901 * 114.00284 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47562 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47523 * 64.99694 * 7 6 5 9 9 C 1.34776 * 120.00411 * 180.02562 * 8 7 6 10 10 O 1.21344 * 119.99754 * 359.97438 * 9 8 7 11 11 C 1.49454 * 120.00113 * 180.02562 * 9 8 7 12 12 O 1.21345 * 120.00128 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99709 * 179.97438 * 11 9 8 14 14 C 1.46504 * 119.99730 * 179.97438 * 13 11 9 15 15 C 1.53081 * 109.43848 * 84.79387 * 14 13 11 16 16 C 1.53190 * 109.29209 * 181.23616 * 15 14 13 17 17 N 1.46921 * 108.89311 * 305.57883 * 16 15 14 18 18 C 1.36940 * 120.63187 * 233.51481 * 17 16 15 19 19 H 1.08001 * 120.00319 * 152.61971 * 18 17 16 20 20 C 1.38813 * 119.99903 * 332.62203 * 18 17 16 21 21 N 1.31624 * 120.00070 * 159.34992 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 339.35529 * 20 18 17 23 23 H 1.48494 * 109.47321 * 92.87851 * 22 20 18 24 24 H 1.48501 * 109.47194 * 212.88430 * 22 20 18 25 25 H 1.48509 * 109.46983 * 332.87654 * 22 20 18 26 26 C 1.46923 * 118.74178 * 53.54201 * 17 16 15 27 27 C 1.53035 * 109.45960 * 204.99782 * 14 13 11 28 28 H 1.08996 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47061 * 300.00244 * 1 2 3 30 30 H 1.09007 * 109.46823 * 59.99838 * 1 2 3 31 31 H 1.09003 * 109.46710 * 59.99750 * 3 2 1 32 32 H 1.08997 * 109.46747 * 299.99942 * 3 2 1 33 33 H 1.09002 * 109.47217 * 304.99886 * 4 3 2 34 34 H 1.08993 * 109.47105 * 185.00118 * 4 3 2 35 35 H 1.09002 * 109.46979 * 59.99706 * 6 5 4 36 36 H 1.09003 * 109.47028 * 300.00405 * 6 5 4 37 37 H 1.09006 * 109.46950 * 305.00084 * 7 6 5 38 38 H 1.09001 * 109.47474 * 184.99779 * 7 6 5 39 39 H 0.96998 * 119.99930 * 0.02562 * 8 7 6 40 40 H 0.96998 * 120.00063 * 359.97438 * 13 11 9 41 41 H 1.08998 * 109.46073 * 324.97324 * 14 13 11 42 42 H 1.08992 * 109.38800 * 61.36034 * 15 14 13 43 43 H 1.09002 * 109.61927 * 301.25313 * 15 14 13 44 44 H 1.08999 * 109.58729 * 185.71870 * 16 15 14 45 45 H 1.09004 * 109.58886 * 65.43758 * 16 15 14 46 46 H 0.97001 * 119.99914 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.59094 * 66.17180 * 26 17 16 48 48 H 1.09001 * 109.59077 * 186.46452 * 26 17 16 49 49 H 1.09002 * 109.49848 * 58.67960 * 27 14 13 50 50 H 1.09002 * 109.52425 * 298.59433 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3811 0.4191 -1.3246 7 6 5.7246 -0.2340 -2.6648 8 7 5.3569 0.6702 -3.7572 9 6 5.5688 0.3028 -5.0364 10 8 6.0646 -0.7769 -5.2834 11 6 5.1943 1.2256 -6.1508 12 8 4.6989 2.3054 -5.9039 13 7 5.4067 0.8583 -7.4301 14 6 5.0390 1.7626 -8.5225 15 6 6.1781 2.7555 -8.7672 16 6 5.7777 3.7187 -9.8890 17 7 5.3901 2.9373 -11.0713 18 6 5.9724 3.1767 -12.2874 19 1 6.0447 2.3836 -13.0170 20 6 6.4697 4.4386 -12.5825 21 7 7.3661 4.5866 -13.5349 22 14 5.8670 5.9268 -11.6278 23 1 6.7730 6.1777 -10.4783 24 1 5.8562 7.1151 -12.5183 25 1 4.4922 5.6706 -11.1278 26 6 4.3655 1.8946 -10.9243 27 6 4.7829 0.9493 -9.7933 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5682 0.8410 34 1 3.9785 2.1764 0.0889 35 1 5.7350 -0.2135 -0.5104 36 1 5.8629 1.3949 -1.2622 37 1 5.1728 -1.1687 -2.7655 38 1 6.7946 -0.4375 -2.7062 39 1 4.9610 1.5334 -3.5598 40 1 5.8030 -0.0048 -7.6275 41 1 4.1353 2.3091 -8.2529 42 1 7.0763 2.2110 -9.0585 43 1 6.3739 3.3199 -7.8555 44 1 6.6218 4.3622 -10.1369 45 1 4.9359 4.3298 -9.5629 46 1 7.7139 5.4684 -13.7408 47 1 3.4079 2.3549 -10.6810 48 1 4.2763 1.3360 -11.8560 49 1 3.9866 0.2281 -9.6094 50 1 5.6933 0.4215 -10.0776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341007258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:25 Heat of formation + Delta-G solvation = -134.742712 kcal Electronic energy + Delta-G solvation = -29992.682959 eV Core-core repulsion = 25635.307334 eV Total energy + Delta-G solvation = -4357.375625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.71499 -39.18699 -38.73474 -37.73771 -37.53116 -35.39888 -34.47974 -32.18074 -31.30241 -30.44792 -30.20583 -29.37355 -26.69083 -25.85197 -24.28599 -23.06187 -22.89076 -22.65419 -21.63400 -20.37925 -19.84253 -18.42320 -17.63439 -17.32967 -16.99313 -16.81638 -16.18751 -16.02788 -15.95475 -15.63682 -15.61915 -15.09266 -14.79705 -14.41553 -14.17697 -14.04032 -13.81879 -13.76482 -13.38516 -13.08861 -12.93342 -12.69311 -12.63543 -12.37700 -12.10617 -11.98232 -11.82331 -11.77808 -11.70343 -11.51331 -11.08345 -10.84995 -10.62883 -10.20197 -10.17467 -10.13419 -10.08289 -9.96542 -9.55333 -9.51313 -9.49008 -8.94581 -8.62196 -7.00405 -5.94948 -3.31285 1.40156 2.30083 3.04772 3.21229 3.29587 3.34120 3.50085 3.53386 3.61066 4.32404 4.44977 4.53705 4.54877 4.62185 4.67348 4.81338 4.85633 4.86511 4.94018 4.94821 4.99225 5.10787 5.17103 5.25088 5.26433 5.27244 5.38867 5.39744 5.61094 5.79204 5.94958 6.00038 6.01915 6.12794 6.26031 6.35773 6.54794 6.55513 6.58468 6.63697 6.65989 6.71418 6.86014 6.92763 7.37096 7.69920 7.95264 8.01580 8.32403 8.92971 9.71611 10.08554 11.20779 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.001906 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.932508 B =14686.759067 C =15057.591608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.061 3.939 4 C 0.064 3.936 5 O -0.377 6.377 6 C 0.048 3.952 7 C 0.121 3.879 8 N -0.698 5.698 9 C 0.508 3.492 10 O -0.523 6.523 11 C 0.504 3.496 12 O -0.523 6.523 13 N -0.691 5.691 14 C 0.148 3.852 15 C -0.142 4.142 16 C 0.129 3.871 17 N -0.606 5.606 18 C -0.261 4.261 19 H 0.086 0.914 20 C 0.024 3.976 21 N -0.907 5.907 22 Si 0.882 3.118 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.270 1.270 26 C 0.152 3.848 27 C -0.142 4.142 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.415 0.585 40 H 0.410 0.590 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.026 0.974 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 -9.030 29.998 32.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.016 4.016 4 C -0.013 4.013 5 O -0.296 6.296 6 C -0.029 4.029 7 C -0.002 4.002 8 N -0.352 5.352 9 C 0.289 3.711 10 O -0.399 6.399 11 C 0.284 3.716 12 O -0.399 6.399 13 N -0.342 5.342 14 C 0.045 3.955 15 C -0.182 4.182 16 C 0.003 3.997 17 N -0.330 5.330 18 C -0.389 4.389 19 H 0.104 0.896 20 C -0.175 4.175 21 N -0.550 5.550 22 Si 0.712 3.288 23 H -0.216 1.216 24 H -0.231 1.231 25 H -0.195 1.195 26 C 0.025 3.975 27 C -0.182 4.182 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.252 0.748 40 H 0.245 0.755 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.044 0.956 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.305 -9.154 29.719 32.187 hybrid contribution -0.225 1.270 0.827 1.532 sum -8.530 -7.884 30.546 32.680 Atomic orbital electron populations 1.22759 0.80872 1.02967 0.99986 1.87949 1.19766 1.27230 1.95403 1.22573 0.92244 0.85646 1.01124 1.22537 0.93587 0.97626 0.87521 1.88015 1.21333 1.82158 1.38132 1.22782 0.82556 1.00475 0.97066 1.21495 1.01209 0.93833 0.83680 1.45667 1.62725 1.22052 1.04749 1.20312 0.79494 0.87015 0.84294 1.90757 1.42475 1.22506 1.84117 1.20010 0.80236 0.86924 0.84402 1.90762 1.42825 1.22385 1.83948 1.46121 1.61378 1.21859 1.04863 1.21181 0.98813 0.90585 0.84892 1.22424 0.98183 0.98208 0.99409 1.21318 0.98528 0.93280 0.86608 1.44402 1.43141 1.40134 1.05294 1.18914 1.32501 0.95547 0.91944 0.89598 1.25282 0.98153 0.97407 0.96700 1.69840 1.28447 1.23240 1.33497 0.86970 0.80042 0.83364 0.78415 1.21605 1.23126 1.19469 1.20869 0.90880 0.89745 0.95957 1.22357 1.01984 0.98763 0.95046 0.89508 0.94167 0.93844 0.91740 0.92130 0.92277 0.91528 0.91133 0.92239 0.89890 0.89295 0.74798 0.75468 0.89484 0.91327 0.92245 0.90620 0.95408 0.92761 0.95616 0.91168 0.91850 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.43 10.67 -40.08 -0.43 -3.86 16 3 C 0.06 0.40 6.32 37.16 0.23 0.63 16 4 C 0.06 0.38 6.32 37.16 0.23 0.62 16 5 O -0.38 -3.17 10.25 -40.08 -0.41 -3.59 16 6 C 0.05 0.29 6.07 37.15 0.23 0.51 16 7 C 0.12 0.96 6.06 -4.05 -0.02 0.94 16 8 N -0.70 -7.19 5.50 -60.73 -0.33 -7.53 16 9 C 0.51 6.61 7.89 -11.58 -0.09 6.52 16 10 O -0.52 -7.67 16.48 5.50 0.09 -7.58 16 11 C 0.50 7.34 7.85 -11.58 -0.09 7.25 16 12 O -0.52 -8.70 16.14 5.50 0.09 -8.61 16 13 N -0.69 -9.78 5.07 -54.17 -0.27 -10.05 16 14 C 0.15 2.39 2.41 -67.87 -0.16 2.23 16 15 C -0.14 -2.62 5.66 -26.59 -0.15 -2.77 16 16 C 0.13 2.85 4.20 -3.71 -0.02 2.83 16 17 N -0.61 -14.21 2.77 -172.32 -0.48 -14.69 16 18 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 19 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 20 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 21 N -0.91 -27.78 13.97 55.49 0.78 -27.01 16 22 Si 0.88 22.53 24.34 -169.99 -4.14 18.39 16 23 H -0.29 -7.15 6.62 56.52 0.37 -6.78 16 24 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 25 H -0.27 -6.78 6.64 56.52 0.38 -6.41 16 26 C 0.15 2.89 6.52 -3.71 -0.02 2.86 16 27 C -0.14 -2.21 5.55 -26.61 -0.15 -2.35 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.25 8.14 -51.92 -0.42 -0.18 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.42 4.08 7.94 -40.82 -0.32 3.75 16 40 H 0.41 5.22 8.07 -40.82 -0.33 4.89 16 41 H 0.09 1.50 7.58 -51.93 -0.39 1.10 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.08 1.83 4.50 -51.93 -0.23 1.60 16 45 H 0.03 0.62 7.07 -51.93 -0.37 0.25 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 49 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 406.41 15.07 6.12 6.12 Total: -1.00 -34.69 406.41 -6.56 -41.25 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.44 Total: 3.36 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 0.86 Total: 13.79 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.31 Total: -59.28 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.66 Total: -23.64 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.39 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.69 -6.56 -41.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341007258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.495 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds