Wall clock time and date at job start Wed Apr 1 2020 02:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 114.00271 * 2 1 4 4 C 1.52998 * 109.47223 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47284 * 64.99897 * 4 3 2 6 6 C 1.42901 * 114.00284 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47562 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47523 * 64.99694 * 7 6 5 9 9 C 1.34776 * 120.00411 * 180.02562 * 8 7 6 10 10 O 1.21344 * 119.99754 * 359.97438 * 9 8 7 11 11 C 1.49454 * 120.00113 * 180.02562 * 9 8 7 12 12 O 1.21345 * 120.00128 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99709 * 179.97438 * 11 9 8 14 14 C 1.46504 * 119.99730 * 179.97438 * 13 11 9 15 15 C 1.53081 * 109.43848 * 84.79387 * 14 13 11 16 16 C 1.53190 * 109.29209 * 181.23616 * 15 14 13 17 17 N 1.46921 * 108.89311 * 305.57883 * 16 15 14 18 18 C 1.36940 * 120.63187 * 233.51481 * 17 16 15 19 19 H 1.08001 * 120.00319 * 152.61971 * 18 17 16 20 20 C 1.38813 * 119.99903 * 332.62203 * 18 17 16 21 21 N 1.31624 * 120.00070 * 159.34992 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 339.35529 * 20 18 17 23 23 H 1.48494 * 109.47321 * 92.87851 * 22 20 18 24 24 H 1.48501 * 109.47194 * 212.88430 * 22 20 18 25 25 H 1.48509 * 109.46983 * 332.87654 * 22 20 18 26 26 C 1.46923 * 118.74178 * 53.54201 * 17 16 15 27 27 C 1.53035 * 109.45960 * 204.99782 * 14 13 11 28 28 H 1.08996 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47061 * 300.00244 * 1 2 3 30 30 H 1.09007 * 109.46823 * 59.99838 * 1 2 3 31 31 H 1.09003 * 109.46710 * 59.99750 * 3 2 1 32 32 H 1.08997 * 109.46747 * 299.99942 * 3 2 1 33 33 H 1.09002 * 109.47217 * 304.99886 * 4 3 2 34 34 H 1.08993 * 109.47105 * 185.00118 * 4 3 2 35 35 H 1.09002 * 109.46979 * 59.99706 * 6 5 4 36 36 H 1.09003 * 109.47028 * 300.00405 * 6 5 4 37 37 H 1.09006 * 109.46950 * 305.00084 * 7 6 5 38 38 H 1.09001 * 109.47474 * 184.99779 * 7 6 5 39 39 H 0.96998 * 119.99930 * 0.02562 * 8 7 6 40 40 H 0.96998 * 120.00063 * 359.97438 * 13 11 9 41 41 H 1.08998 * 109.46073 * 324.97324 * 14 13 11 42 42 H 1.08992 * 109.38800 * 61.36034 * 15 14 13 43 43 H 1.09002 * 109.61927 * 301.25313 * 15 14 13 44 44 H 1.08999 * 109.58729 * 185.71870 * 16 15 14 45 45 H 1.09004 * 109.58886 * 65.43758 * 16 15 14 46 46 H 0.97001 * 119.99914 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.59094 * 66.17180 * 26 17 16 48 48 H 1.09001 * 109.59077 * 186.46452 * 26 17 16 49 49 H 1.09002 * 109.49848 * 58.67960 * 27 14 13 50 50 H 1.09002 * 109.52425 * 298.59433 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3811 0.4191 -1.3246 7 6 5.7246 -0.2340 -2.6648 8 7 5.3569 0.6702 -3.7572 9 6 5.5688 0.3028 -5.0364 10 8 6.0646 -0.7769 -5.2834 11 6 5.1943 1.2256 -6.1508 12 8 4.6989 2.3054 -5.9039 13 7 5.4067 0.8583 -7.4301 14 6 5.0390 1.7626 -8.5225 15 6 6.1781 2.7555 -8.7672 16 6 5.7777 3.7187 -9.8890 17 7 5.3901 2.9373 -11.0713 18 6 5.9724 3.1767 -12.2874 19 1 6.0447 2.3836 -13.0170 20 6 6.4697 4.4386 -12.5825 21 7 7.3661 4.5866 -13.5349 22 14 5.8670 5.9268 -11.6278 23 1 6.7730 6.1777 -10.4783 24 1 5.8562 7.1151 -12.5183 25 1 4.4922 5.6706 -11.1278 26 6 4.3655 1.8946 -10.9243 27 6 4.7829 0.9493 -9.7933 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5682 0.8410 34 1 3.9785 2.1764 0.0889 35 1 5.7350 -0.2135 -0.5104 36 1 5.8629 1.3949 -1.2622 37 1 5.1728 -1.1687 -2.7655 38 1 6.7946 -0.4375 -2.7062 39 1 4.9610 1.5334 -3.5598 40 1 5.8030 -0.0048 -7.6275 41 1 4.1353 2.3091 -8.2529 42 1 7.0763 2.2110 -9.0585 43 1 6.3739 3.3199 -7.8555 44 1 6.6218 4.3622 -10.1369 45 1 4.9359 4.3298 -9.5629 46 1 7.7139 5.4684 -13.7408 47 1 3.4079 2.3549 -10.6810 48 1 4.2763 1.3360 -11.8560 49 1 3.9866 0.2281 -9.6094 50 1 5.6933 0.4215 -10.0776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341007258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:24 Heat of formation + Delta-G solvation = -163.342779 kcal Electronic energy + Delta-G solvation = -29993.923151 eV Core-core repulsion = 25635.307334 eV Total energy + Delta-G solvation = -4358.615817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.80822 -40.19044 -39.44434 -38.98285 -38.27333 -36.49939 -35.71662 -34.05718 -32.00873 -31.90666 -31.81389 -29.99986 -27.38182 -27.11739 -25.62933 -24.45817 -23.71793 -23.50694 -22.89587 -21.54219 -21.22683 -19.60282 -18.75537 -18.23490 -18.01372 -17.73539 -17.39863 -17.00364 -16.84759 -16.52016 -16.31714 -16.19685 -15.95868 -15.71303 -15.45892 -15.36305 -15.06036 -14.77840 -14.56854 -14.43728 -14.13319 -13.95742 -13.85414 -13.44987 -13.27189 -13.08170 -12.87341 -12.69124 -12.56645 -12.53897 -12.24867 -12.24137 -12.03308 -11.97116 -11.78238 -11.51470 -11.47238 -10.84512 -10.70820 -10.65699 -10.56195 -10.34955 -10.21158 -8.96837 -8.16360 -5.48185 0.32076 1.28789 1.30169 1.41167 1.49844 2.11754 2.41473 2.54507 2.67843 2.86521 3.04404 3.32590 3.42406 3.75511 3.83154 3.88477 4.12012 4.16868 4.18810 4.22950 4.28751 4.40938 4.44638 4.44955 4.48091 4.53304 4.58886 4.62912 4.65752 4.68132 4.78577 4.80035 4.81291 4.85529 4.91255 4.97357 5.07017 5.14169 5.14660 5.26963 5.41057 5.86779 5.90173 6.13482 6.13929 6.27483 6.33190 6.71083 6.90760 6.92376 7.61647 8.02220 9.03174 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.001906 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.932508 B =14686.759067 C =15057.591608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.054 3.946 4 C 0.060 3.940 5 O -0.406 6.406 6 C 0.051 3.949 7 C 0.118 3.882 8 N -0.685 5.685 9 C 0.511 3.489 10 O -0.542 6.542 11 C 0.505 3.495 12 O -0.544 6.544 13 N -0.683 5.683 14 C 0.157 3.843 15 C -0.132 4.132 16 C 0.125 3.875 17 N -0.619 5.619 18 C -0.245 4.245 19 H 0.058 0.942 20 C -0.034 4.034 21 N -0.955 5.955 22 Si 0.941 3.059 23 H -0.279 1.279 24 H -0.310 1.310 25 H -0.261 1.261 26 C 0.145 3.855 27 C -0.129 4.129 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.419 0.581 40 H 0.418 0.582 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.039 0.961 48 H 0.069 0.931 49 H 0.097 0.903 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 -9.464 32.989 35.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.022 4.022 4 C -0.016 4.016 5 O -0.326 6.326 6 C -0.025 4.025 7 C -0.005 4.005 8 N -0.338 5.338 9 C 0.291 3.709 10 O -0.420 6.420 11 C 0.286 3.714 12 O -0.422 6.422 13 N -0.335 5.335 14 C 0.053 3.947 15 C -0.173 4.173 16 C 0.000 4.000 17 N -0.344 5.344 18 C -0.375 4.375 19 H 0.076 0.924 20 C -0.229 4.229 21 N -0.601 5.601 22 Si 0.770 3.230 23 H -0.206 1.206 24 H -0.239 1.239 25 H -0.186 1.186 26 C 0.020 3.980 27 C -0.168 4.168 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.256 0.744 40 H 0.256 0.744 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.057 0.943 48 H 0.087 0.913 49 H 0.115 0.885 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.245 -9.617 32.781 35.391 hybrid contribution 0.017 1.318 -0.048 1.319 sum -9.228 -8.300 32.733 35.007 Atomic orbital electron populations 1.22884 0.79840 1.03579 1.00720 1.87902 1.21141 1.28773 1.95590 1.22763 0.92707 0.84934 1.01790 1.22707 0.93297 0.98760 0.86850 1.87971 1.22574 1.82702 1.39403 1.22848 0.81822 1.01604 0.96255 1.21700 1.01788 0.93126 0.83875 1.45737 1.61329 1.22361 1.04392 1.20004 0.79722 0.86444 0.84706 1.90755 1.43806 1.23080 1.84378 1.20300 0.79564 0.86799 0.84752 1.90754 1.43772 1.23356 1.84288 1.45926 1.61267 1.21849 1.04431 1.20932 0.97514 0.90480 0.85745 1.22264 0.98848 0.98050 0.98096 1.21298 0.97710 0.93855 0.87167 1.44528 1.44332 1.41250 1.04280 1.18888 1.31109 0.94589 0.92908 0.92393 1.25871 0.98755 1.00039 0.98223 1.69960 1.30442 1.23586 1.36125 0.86000 0.79898 0.79800 0.77270 1.20557 1.23928 1.18576 1.21092 0.90261 0.89201 0.97472 1.22194 1.03104 0.98248 0.93240 0.89071 0.92544 0.93964 0.89488 0.92980 0.91648 0.89375 0.89099 0.90613 0.90999 0.88043 0.74405 0.74407 0.89904 0.91829 0.91635 0.93054 0.94977 0.93005 0.94317 0.91255 0.88474 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.01 10.67 -144.34 -1.54 -8.55 16 3 C 0.05 0.63 6.32 71.98 0.45 1.08 16 4 C 0.06 0.60 6.32 71.98 0.45 1.05 16 5 O -0.41 -6.11 10.25 -144.34 -1.48 -7.59 16 6 C 0.05 0.48 6.07 71.98 0.44 0.92 16 7 C 0.12 1.64 6.06 86.38 0.52 2.16 16 8 N -0.69 -12.85 5.50 -464.42 -2.55 -15.40 16 9 C 0.51 12.39 7.89 87.27 0.69 13.08 16 10 O -0.54 -15.00 16.48 -3.23 -0.05 -15.05 16 11 C 0.51 13.70 7.85 87.27 0.69 14.38 16 12 O -0.54 -17.06 16.14 -3.23 -0.05 -17.11 16 13 N -0.68 -17.73 5.07 -443.67 -2.25 -19.98 16 14 C 0.16 4.69 2.41 45.03 0.11 4.80 16 15 C -0.13 -4.66 5.66 30.68 0.17 -4.49 16 16 C 0.13 5.39 4.20 86.36 0.36 5.75 16 17 N -0.62 -28.57 2.77 -699.09 -1.94 -30.51 16 18 C -0.25 -13.75 10.03 84.03 0.84 -12.91 16 19 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 20 C -0.03 -1.99 5.23 84.86 0.44 -1.55 16 21 N -0.95 -60.09 13.97 21.65 0.30 -59.79 16 22 Si 0.94 47.07 24.34 68.60 1.67 48.74 16 23 H -0.28 -13.34 6.62 99.48 0.66 -12.68 16 24 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 25 H -0.26 -12.54 6.64 99.48 0.66 -11.88 16 26 C 0.14 5.24 6.52 86.37 0.56 5.80 16 27 C -0.13 -3.65 5.55 30.67 0.17 -3.48 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.04 0.45 8.14 -2.38 -0.02 0.44 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.42 7.42 7.94 -92.71 -0.74 6.68 16 40 H 0.42 9.63 8.07 -92.71 -0.75 8.88 16 41 H 0.08 2.62 7.58 -2.39 -0.02 2.60 16 42 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.05 2.45 4.50 -2.39 -0.01 2.44 16 45 H 0.03 1.36 7.07 -2.38 -0.02 1.35 16 46 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 47 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.07 2.50 7.93 -2.39 -0.02 2.48 16 49 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -75.43 406.41 -1.36 -76.79 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -0.63 Total: 20.31 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: 7.16 Total: 28.14 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -6.44 Total: -125.68 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -3.13 Total: -48.30 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.67 Total: 48.74 kcal Total: -75.43 -1.36 -76.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341007258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.552 kcal (2) G-P(sol) polarization free energy of solvation -75.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds