Wall clock time and date at job start Wed Apr 1 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99975 * 2 1 4 4 N 1.46902 * 109.46794 * 125.00546 * 3 2 1 5 5 C 1.38535 * 110.99967 * 164.43769 * 4 3 2 6 6 N 1.31254 * 126.37577 * 57.16695 * 5 4 3 7 7 N 1.28507 * 110.09747 * 179.76228 * 6 5 4 8 8 C 1.31229 * 109.95628 * 0.38754 * 7 6 5 9 9 C 1.47945 * 126.47067 * 179.88208 * 8 7 6 10 10 C 1.36712 * 126.93504 * 359.69327 * 9 8 7 11 11 N 1.35210 * 106.01731 * 179.73874 * 10 9 8 12 12 C 1.46493 * 125.73082 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47035 * 124.99581 * 12 11 10 14 14 C 1.50700 * 109.46959 * 179.97438 * 13 12 11 15 15 H 1.07992 * 120.00494 * 0.02562 * 14 13 12 16 16 C 1.37888 * 119.99794 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99774 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99807 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47072 * 89.99998 * 18 16 14 20 20 H 1.48504 * 109.46660 * 209.99728 * 18 16 14 21 21 H 1.48498 * 109.47132 * 329.99466 * 18 16 14 22 22 N 1.28641 * 108.53630 * 359.97438 * 11 10 9 23 23 N 1.28611 * 110.54457 * 0.02562 * 22 11 10 24 24 N 1.36604 * 126.38360 * 237.16037 * 5 4 3 25 25 C 1.46500 * 127.17350 * 359.97438 * 24 5 4 26 26 C 1.46902 * 111.00200 * 288.39636 * 4 3 2 27 27 C 1.52994 * 117.49947 * 234.11300 * 26 4 3 28 28 C 1.52998 * 117.49915 * 165.44928 * 26 4 3 29 29 H 1.07994 * 119.99923 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99886 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00179 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47164 * 5.01002 * 3 2 1 33 33 H 1.09000 * 109.47341 * 245.00395 * 3 2 1 34 34 H 1.07999 * 126.99109 * 359.72867 * 10 9 8 35 35 H 1.08996 * 109.47648 * 244.99499 * 12 11 10 36 36 H 1.09007 * 109.47353 * 4.99974 * 12 11 10 37 37 H 1.09003 * 109.47384 * 300.00023 * 13 12 11 38 38 H 1.09001 * 109.47021 * 60.00376 * 13 12 11 39 39 H 0.96991 * 119.99567 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.47117 * 264.68130 * 25 24 5 41 41 H 1.09007 * 109.46996 * 24.67217 * 25 24 5 42 42 H 1.08995 * 109.46916 * 144.67623 * 25 24 5 43 43 H 1.09001 * 115.54613 * 19.77982 * 26 4 3 44 44 H 1.09000 * 117.50046 * 359.97438 * 27 26 4 45 45 H 1.09002 * 117.50190 * 145.02041 * 27 26 4 46 46 H 1.09001 * 117.49659 * 214.97512 * 28 26 4 47 47 H 1.08995 * 117.50273 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 3.9389 2.3352 0.9787 6 7 3.6944 3.6147 0.8181 7 7 4.7975 4.2648 0.7093 8 6 5.8139 3.4382 0.7855 9 6 7.2469 3.7964 0.7019 10 6 7.7724 5.0461 0.5250 11 7 9.1152 4.8884 0.5171 12 6 10.1013 5.9593 0.3535 13 6 11.0814 5.9340 1.5282 14 6 12.0962 7.0352 1.3596 15 1 12.0469 7.6882 0.5008 16 6 13.0871 7.2099 2.3024 17 7 13.9725 8.1712 2.1554 18 14 13.1720 6.0809 3.7882 19 1 14.0254 4.9078 3.4704 20 1 13.7535 6.8191 4.9381 21 1 11.8048 5.6184 4.1372 22 7 9.3814 3.6401 0.6773 23 7 8.2968 2.9583 0.7908 24 7 5.2957 2.1773 0.9637 25 6 6.0427 0.9254 1.1081 26 6 2.2753 1.4796 2.4058 27 6 2.6924 2.6292 3.3251 28 6 3.0469 1.1864 3.6939 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0897 33 1 2.6213 1.4027 -0.9314 34 1 7.2260 5.9710 0.4140 35 1 10.6472 5.8115 -0.5783 36 1 9.5911 6.9222 0.3268 37 1 10.5356 6.0819 2.4601 38 1 11.5917 4.9712 1.5549 39 1 14.6697 8.2938 2.8184 40 1 6.3366 0.7957 2.1497 41 1 5.4139 0.0895 0.8014 42 1 6.9334 0.9594 0.4808 43 1 1.2185 1.2136 2.3804 44 1 3.5023 3.2756 2.9869 45 1 1.9103 3.1192 3.9050 46 1 2.4977 0.7279 4.5163 47 1 4.0895 0.8835 3.5982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351278816.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:32 Heat of formation + Delta-G solvation = 248.290601 kcal Electronic energy + Delta-G solvation = -29186.538861 eV Core-core repulsion = 25217.667228 eV Total energy + Delta-G solvation = -3968.871632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.34401 -42.92858 -39.15771 -35.58935 -35.56241 -34.98291 -33.38787 -32.89790 -31.78112 -30.55469 -28.92508 -27.72181 -26.02073 -25.87638 -23.93196 -23.21794 -22.63517 -22.22393 -21.26660 -20.58482 -20.14580 -19.95513 -17.79453 -17.60775 -17.20437 -16.38416 -16.31565 -16.14395 -15.66713 -15.42210 -15.36601 -14.44523 -14.43066 -14.17636 -13.91459 -13.74642 -13.51254 -13.13411 -12.98728 -12.89658 -12.72191 -12.10201 -11.93919 -11.84129 -11.70267 -11.64717 -11.40315 -11.37137 -11.08272 -10.91558 -10.74788 -10.63718 -10.41558 -10.33491 -10.11483 -10.05240 -9.88533 -9.69470 -9.53882 -9.01077 -8.74835 -8.55180 -6.25989 -4.29024 1.07111 1.60876 1.83311 2.05554 2.25343 2.60368 3.08166 3.20068 3.20696 3.28470 3.32247 3.60450 3.76639 4.22488 4.27998 4.49062 4.50551 4.57091 4.63206 4.67297 4.75944 4.92617 4.99663 5.01643 5.05161 5.08469 5.11852 5.22951 5.30982 5.33687 5.40626 5.45447 5.50840 5.60867 5.66343 5.80838 5.82356 5.82807 5.90588 6.00612 6.11661 6.15155 6.29561 6.45024 6.59226 6.91022 6.91860 6.96592 7.46208 8.21516 8.45429 8.54721 8.73019 9.33534 10.85982 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.002097 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.457291 B =13349.386516 C =13674.882062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.096 3.904 4 N -0.432 5.432 5 C 0.340 3.660 6 N -0.296 5.296 7 N -0.271 5.271 8 C 0.282 3.718 9 C 0.021 3.979 10 C 0.010 3.990 11 N -0.269 5.269 12 C 0.119 3.881 13 C -0.021 4.021 14 C -0.533 4.533 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.892 5.892 18 Si 0.878 3.122 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.266 1.266 22 N -0.062 5.062 23 N -0.268 5.268 24 N -0.451 5.451 25 C 0.080 3.920 26 C 0.027 3.973 27 C -0.194 4.194 28 C -0.169 4.169 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.201 0.799 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.025 0.975 38 H 0.033 0.967 39 H 0.267 0.733 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.130 0.870 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.647 -16.403 -2.350 30.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.164 4.164 3 C -0.030 4.030 4 N -0.155 5.155 5 C -0.015 4.015 6 N -0.142 5.142 7 N -0.114 5.114 8 C 0.015 3.985 9 C -0.119 4.119 10 C -0.146 4.146 11 N -0.060 5.060 12 C 0.000 4.000 13 C -0.059 4.059 14 C -0.571 4.571 15 H 0.097 0.903 16 C -0.127 4.127 17 N -0.529 5.529 18 Si 0.705 3.295 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.191 1.191 22 N -0.042 5.042 23 N -0.137 5.137 24 N -0.142 5.142 25 C -0.062 4.062 26 C -0.081 4.081 27 C -0.233 4.233 28 C -0.207 4.207 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.218 0.782 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.148 0.852 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.804 -16.568 -2.317 29.918 hybrid contribution -0.147 -0.201 0.895 0.929 sum -24.951 -16.769 -1.422 30.096 Atomic orbital electron populations 1.23938 0.95770 1.02230 1.00162 1.22807 0.95532 0.98013 1.00000 1.21270 0.93848 0.96031 0.91894 1.58406 1.14139 1.39666 1.03312 1.22030 0.83002 0.90980 1.05503 1.74647 1.19354 1.01062 1.19129 1.74390 0.93333 1.24894 1.18830 1.21013 0.92260 0.80657 1.04537 1.18358 0.88925 0.91270 1.13308 1.23566 0.84198 1.00801 1.06017 1.47945 1.06801 1.08527 1.42746 1.22695 0.88605 0.84939 1.03742 1.19891 0.94296 0.99416 0.92305 1.20761 1.11147 1.14750 1.10430 0.90332 1.24912 0.94920 0.94977 0.97843 1.69876 1.15914 1.31193 1.35920 0.86798 0.79004 0.81083 0.82606 1.19833 1.21039 1.19104 1.78241 1.19392 0.88795 1.17799 1.75264 0.94239 1.26461 1.17710 1.46188 1.06208 1.09227 1.52559 1.22177 0.97314 0.82336 1.04400 1.22614 0.97060 1.04147 0.84256 1.23570 1.04473 0.91761 1.03462 1.23154 1.01430 0.98690 0.97454 0.88416 0.87964 0.86575 0.91824 0.89568 0.78174 0.88056 0.87509 0.95677 0.94861 0.92265 0.90095 0.88774 0.87980 0.85237 0.88190 0.88144 0.87957 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.93 14.32 29.01 0.42 -0.52 16 2 C -0.14 -0.89 9.03 -36.03 -0.33 -1.22 16 3 C 0.10 0.78 5.24 -4.97 -0.03 0.75 16 4 N -0.43 -4.10 4.63 -168.26 -0.78 -4.88 16 5 C 0.34 4.17 4.80 -318.68 -1.53 2.64 16 6 N -0.30 -4.29 10.62 30.34 0.32 -3.96 16 7 N -0.27 -4.22 12.21 32.60 0.40 -3.82 16 8 C 0.28 4.17 7.94 -153.82 -1.22 2.95 16 9 C 0.02 0.32 7.07 -83.21 -0.59 -0.26 16 10 C 0.01 0.15 11.54 -16.62 -0.19 -0.05 16 11 N -0.27 -4.46 3.43 -60.93 -0.21 -4.67 16 12 C 0.12 2.00 6.39 -4.04 -0.03 1.97 16 13 C -0.02 -0.45 4.16 -27.88 -0.12 -0.57 16 14 C -0.53 -13.82 9.66 -34.44 -0.33 -14.15 16 15 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 16 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.89 -25.96 13.96 55.43 0.77 -25.18 16 18 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 22 N -0.06 -1.13 12.87 60.35 0.78 -0.35 16 23 N -0.27 -4.51 10.91 33.01 0.36 -4.15 16 24 N -0.45 -5.70 3.23 -122.01 -0.39 -6.10 16 25 C 0.08 0.79 10.74 59.85 0.64 1.43 16 26 C 0.03 0.23 5.72 -67.72 -0.39 -0.15 16 27 C -0.19 -1.94 9.38 -26.69 -0.25 -2.19 16 28 C -0.17 -1.42 10.31 -26.69 -0.28 -1.70 16 29 H 0.10 0.47 7.84 -52.49 -0.41 0.06 16 30 H 0.10 0.41 8.06 -52.49 -0.42 -0.01 16 31 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 32 H 0.06 0.54 7.71 -51.93 -0.40 0.14 16 33 H 0.09 0.76 7.98 -51.93 -0.41 0.34 16 34 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 35 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.11 1.56 8.06 -51.93 -0.42 1.14 16 37 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 38 H 0.03 0.75 7.54 -51.93 -0.39 0.36 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 42 H 0.10 1.08 7.01 -51.93 -0.36 0.72 16 43 H 0.13 0.90 7.56 -51.93 -0.39 0.51 16 44 H 0.10 1.32 5.73 -51.93 -0.30 1.02 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 397.80 15.07 5.99 5.99 Total: -1.00 -31.26 397.80 -8.59 -39.85 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.85 Total: 0.04 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -4.31 Total: -9.04 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 1.25 Total: -53.11 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.26 -8.59 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351278816.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 288.138 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 256.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 248.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds