Wall clock time and date at job start Wed Apr 1 2020 02:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99975 * 2 1 4 4 N 1.46902 * 109.46794 * 125.00546 * 3 2 1 5 5 C 1.38535 * 110.99967 * 164.43769 * 4 3 2 6 6 N 1.31254 * 126.37577 * 57.16695 * 5 4 3 7 7 N 1.28507 * 110.09747 * 179.76228 * 6 5 4 8 8 C 1.31229 * 109.95628 * 0.38754 * 7 6 5 9 9 C 1.47945 * 126.47067 * 179.88208 * 8 7 6 10 10 C 1.36712 * 126.93504 * 359.69327 * 9 8 7 11 11 N 1.35210 * 106.01731 * 179.73874 * 10 9 8 12 12 C 1.46493 * 125.73082 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47035 * 124.99581 * 12 11 10 14 14 C 1.50700 * 109.46959 * 179.97438 * 13 12 11 15 15 H 1.07992 * 120.00494 * 0.02562 * 14 13 12 16 16 C 1.37888 * 119.99794 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99774 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99807 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47072 * 89.99998 * 18 16 14 20 20 H 1.48504 * 109.46660 * 209.99728 * 18 16 14 21 21 H 1.48498 * 109.47132 * 329.99466 * 18 16 14 22 22 N 1.28641 * 108.53630 * 359.97438 * 11 10 9 23 23 N 1.28611 * 110.54457 * 0.02562 * 22 11 10 24 24 N 1.36604 * 126.38360 * 237.16037 * 5 4 3 25 25 C 1.46500 * 127.17350 * 359.97438 * 24 5 4 26 26 C 1.46902 * 111.00200 * 288.39636 * 4 3 2 27 27 C 1.52994 * 117.49947 * 234.11300 * 26 4 3 28 28 C 1.52998 * 117.49915 * 165.44928 * 26 4 3 29 29 H 1.07994 * 119.99923 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99886 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00179 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47164 * 5.01002 * 3 2 1 33 33 H 1.09000 * 109.47341 * 245.00395 * 3 2 1 34 34 H 1.07999 * 126.99109 * 359.72867 * 10 9 8 35 35 H 1.08996 * 109.47648 * 244.99499 * 12 11 10 36 36 H 1.09007 * 109.47353 * 4.99974 * 12 11 10 37 37 H 1.09003 * 109.47384 * 300.00023 * 13 12 11 38 38 H 1.09001 * 109.47021 * 60.00376 * 13 12 11 39 39 H 0.96991 * 119.99567 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.47117 * 264.68130 * 25 24 5 41 41 H 1.09007 * 109.46996 * 24.67217 * 25 24 5 42 42 H 1.08995 * 109.46916 * 144.67623 * 25 24 5 43 43 H 1.09001 * 115.54613 * 19.77982 * 26 4 3 44 44 H 1.09000 * 117.50046 * 359.97438 * 27 26 4 45 45 H 1.09002 * 117.50190 * 145.02041 * 27 26 4 46 46 H 1.09001 * 117.49659 * 214.97512 * 28 26 4 47 47 H 1.08995 * 117.50273 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 3.9389 2.3352 0.9787 6 7 3.6944 3.6147 0.8181 7 7 4.7975 4.2648 0.7093 8 6 5.8139 3.4382 0.7855 9 6 7.2469 3.7964 0.7019 10 6 7.7724 5.0461 0.5250 11 7 9.1152 4.8884 0.5171 12 6 10.1013 5.9593 0.3535 13 6 11.0814 5.9340 1.5282 14 6 12.0962 7.0352 1.3596 15 1 12.0469 7.6882 0.5008 16 6 13.0871 7.2099 2.3024 17 7 13.9725 8.1712 2.1554 18 14 13.1720 6.0809 3.7882 19 1 14.0254 4.9078 3.4704 20 1 13.7535 6.8191 4.9381 21 1 11.8048 5.6184 4.1372 22 7 9.3814 3.6401 0.6773 23 7 8.2968 2.9583 0.7908 24 7 5.2957 2.1773 0.9637 25 6 6.0427 0.9254 1.1081 26 6 2.2753 1.4796 2.4058 27 6 2.6924 2.6292 3.3251 28 6 3.0469 1.1864 3.6939 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0897 33 1 2.6213 1.4027 -0.9314 34 1 7.2260 5.9710 0.4140 35 1 10.6472 5.8115 -0.5783 36 1 9.5911 6.9222 0.3268 37 1 10.5356 6.0819 2.4601 38 1 11.5917 4.9712 1.5549 39 1 14.6697 8.2938 2.8184 40 1 6.3366 0.7957 2.1497 41 1 5.4139 0.0895 0.8014 42 1 6.9334 0.9594 0.4808 43 1 1.2185 1.2136 2.3804 44 1 3.5023 3.2756 2.9869 45 1 1.9103 3.1192 3.9050 46 1 2.4977 0.7279 4.5163 47 1 4.0895 0.8835 3.5982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351278816.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:31 Heat of formation + Delta-G solvation = 230.912933 kcal Electronic energy + Delta-G solvation = -29187.292413 eV Core-core repulsion = 25217.667228 eV Total energy + Delta-G solvation = -3969.625185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.50476 -44.04597 -39.90680 -36.96171 -36.21648 -36.03230 -34.85483 -34.07406 -32.82627 -32.24251 -29.98247 -28.60253 -27.67257 -26.54351 -25.07162 -24.24423 -23.67155 -23.35954 -22.50658 -21.61163 -21.16117 -20.58862 -19.38583 -18.44509 -18.39650 -17.70899 -17.56663 -17.07019 -16.61184 -16.57426 -16.24953 -15.94913 -15.51098 -15.25878 -15.02170 -14.80574 -14.60758 -14.38386 -13.88031 -13.80951 -13.75873 -13.32173 -13.25613 -13.03162 -12.79181 -12.66083 -12.52132 -12.44196 -12.34460 -12.04970 -11.95677 -11.92836 -11.61277 -11.55911 -11.49797 -11.39406 -11.20684 -10.97864 -10.83543 -10.35993 -9.78561 -9.68432 -8.36236 -6.41616 -0.00216 0.59613 0.85799 1.13933 1.29963 1.31581 1.34777 1.43122 1.48120 1.93016 2.28947 2.39980 2.65657 2.89786 2.99718 3.41071 3.48348 3.71021 3.77241 3.87284 3.90790 3.93053 4.06626 4.10059 4.15068 4.17421 4.26465 4.32582 4.45955 4.51024 4.53038 4.55465 4.67608 4.69092 4.72589 4.76758 4.86284 4.94906 5.03312 5.09213 5.10758 5.22958 5.33339 5.36156 5.53304 5.59520 5.73878 5.91051 6.02632 6.13316 6.66040 7.23476 7.24459 7.42601 8.78803 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.002097 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.457291 B =13349.386516 C =13674.882062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.155 4.155 3 C 0.097 3.903 4 N -0.429 5.429 5 C 0.356 3.644 6 N -0.319 5.319 7 N -0.288 5.288 8 C 0.267 3.733 9 C 0.016 3.984 10 C 0.022 3.978 11 N -0.273 5.273 12 C 0.128 3.872 13 C -0.016 4.016 14 C -0.529 4.529 15 H 0.058 0.942 16 C 0.021 3.979 17 N -0.937 5.937 18 Si 0.936 3.064 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.259 1.259 22 N -0.096 5.096 23 N -0.269 5.269 24 N -0.452 5.452 25 C 0.080 3.920 26 C 0.032 3.968 27 C -0.210 4.210 28 C -0.158 4.158 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.231 0.769 35 H 0.110 0.890 36 H 0.134 0.866 37 H 0.021 0.979 38 H 0.025 0.975 39 H 0.269 0.731 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.152 0.848 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.126 0.874 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.207 -18.379 -1.857 33.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.029 4.029 4 N -0.153 5.153 5 C 0.000 4.000 6 N -0.165 5.165 7 N -0.131 5.131 8 C -0.001 4.001 9 C -0.124 4.124 10 C -0.134 4.134 11 N -0.064 5.064 12 C 0.010 3.990 13 C -0.055 4.055 14 C -0.568 4.568 15 H 0.076 0.924 16 C -0.178 4.178 17 N -0.577 5.577 18 Si 0.761 3.239 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.183 1.183 22 N -0.075 5.075 23 N -0.138 5.138 24 N -0.142 5.142 25 C -0.062 4.062 26 C -0.076 4.076 27 C -0.249 4.249 28 C -0.196 4.196 29 H 0.119 0.881 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.248 0.752 35 H 0.128 0.872 36 H 0.152 0.848 37 H 0.039 0.961 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.112 0.888 43 H 0.169 0.831 44 H 0.085 0.915 45 H 0.130 0.870 46 H 0.144 0.856 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -27.373 -18.570 -1.830 33.128 hybrid contribution 0.501 0.385 0.688 0.934 sum -26.872 -18.185 -1.142 32.467 Atomic orbital electron populations 1.24112 0.95376 1.03141 0.98030 1.22673 0.95771 0.96986 1.01877 1.21296 0.93422 0.97247 0.90889 1.58651 1.14237 1.38101 1.04288 1.22321 0.83403 0.90919 1.03349 1.74591 1.19200 1.02194 1.20504 1.74300 0.93799 1.25766 1.19275 1.20926 0.91861 0.81577 1.05690 1.18539 0.89101 0.91528 1.13184 1.24053 0.83381 1.01703 1.04251 1.47806 1.07353 1.08004 1.43250 1.22492 0.88399 0.86291 1.01818 1.19706 0.94326 0.97187 0.94236 1.21091 1.11561 1.14961 1.09165 0.92378 1.25718 0.94966 0.96365 1.00790 1.69996 1.17097 1.33277 1.37289 0.85874 0.79249 0.79304 0.79499 1.19415 1.20735 1.18333 1.78227 1.20161 0.89594 1.19557 1.75223 0.94378 1.26690 1.17480 1.46353 1.06496 1.09349 1.52024 1.22323 0.97306 0.81903 1.04647 1.22804 0.98045 1.03046 0.83685 1.23494 1.04156 0.92262 1.04997 1.23215 1.01165 0.97191 0.98031 0.88125 0.86407 0.86060 0.92234 0.90621 0.75238 0.87217 0.84844 0.96106 0.95696 0.92207 0.89562 0.86544 0.88757 0.83067 0.91496 0.87025 0.85557 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 14.32 67.78 0.97 -0.27 16 2 C -0.15 -1.54 9.03 25.65 0.23 -1.31 16 3 C 0.10 1.44 5.24 85.56 0.45 1.89 16 4 N -0.43 -7.49 4.63 -686.25 -3.18 -10.66 16 5 C 0.36 8.47 4.80 260.05 1.25 9.72 16 6 N -0.32 -9.18 10.62 -57.92 -0.61 -9.79 16 7 N -0.29 -8.90 12.21 -50.79 -0.62 -9.52 16 8 C 0.27 7.79 7.94 136.28 1.08 8.88 16 9 C 0.02 0.49 7.07 40.93 0.29 0.78 16 10 C 0.02 0.60 11.54 83.82 0.97 1.57 16 11 N -0.27 -8.71 3.43 -346.68 -1.19 -9.90 16 12 C 0.13 4.15 6.39 86.38 0.55 4.70 16 13 C -0.02 -0.69 4.16 29.85 0.12 -0.57 16 14 C -0.53 -27.52 9.66 25.60 0.25 -27.27 16 15 H 0.06 3.19 7.99 -2.91 -0.02 3.16 16 16 C 0.02 1.14 5.47 84.66 0.46 1.60 16 17 N -0.94 -55.45 13.96 21.45 0.30 -55.15 16 18 Si 0.94 43.18 27.47 68.60 1.88 45.06 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.26 -11.53 6.54 99.48 0.65 -10.88 16 22 N -0.10 -3.42 12.87 37.02 0.48 -2.94 16 23 N -0.27 -8.90 10.91 -49.49 -0.54 -9.44 16 24 N -0.45 -11.14 3.23 -539.92 -1.75 -12.88 16 25 C 0.08 1.49 10.74 127.77 1.37 2.86 16 26 C 0.03 0.48 5.72 44.91 0.26 0.74 16 27 C -0.21 -3.98 9.38 30.62 0.29 -3.69 16 28 C -0.16 -2.32 10.31 30.62 0.32 -2.01 16 29 H 0.10 0.69 7.84 -2.91 -0.02 0.67 16 30 H 0.12 0.54 8.06 -2.91 -0.02 0.51 16 31 H 0.12 1.11 8.06 -2.91 -0.02 1.08 16 32 H 0.06 0.93 7.71 -2.39 -0.02 0.91 16 33 H 0.08 1.27 7.98 -2.39 -0.02 1.25 16 34 H 0.23 4.79 8.06 -2.91 -0.02 4.77 16 35 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.13 3.59 8.06 -2.38 -0.02 3.57 16 37 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 38 H 0.02 1.10 7.54 -2.39 -0.02 1.09 16 39 H 0.27 14.95 8.31 -92.72 -0.77 14.18 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.12 1.62 8.11 -2.38 -0.02 1.60 16 42 H 0.09 1.94 7.01 -2.39 -0.02 1.93 16 43 H 0.15 1.64 7.56 -2.39 -0.02 1.62 16 44 H 0.07 1.77 5.73 -2.39 -0.01 1.75 16 45 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -68.28 397.80 4.55 -63.73 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.92 Total: 13.86 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 8.86 Total: -2.37 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -7.11 Total: -120.28 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Total: -68.28 4.55 -63.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351278816.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 294.640 kcal (2) G-P(sol) polarization free energy of solvation -68.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 226.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 230.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds