Wall clock time and date at job start Wed Apr 1 2020 02:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46726 * 2 1 4 4 C 1.37499 * 127.17855 * 272.16001 * 3 2 1 5 5 C 1.47950 * 126.47288 * 0.04570 * 4 3 2 6 6 C 1.36713 * 126.93447 * 180.28412 * 5 4 3 7 7 N 1.35207 * 106.01325 * 180.02562 * 6 5 4 8 8 C 1.46504 * 125.72637 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47247 * 124.99903 * 8 7 6 10 10 C 1.50697 * 109.46999 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00298 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99572 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99757 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00279 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46897 * 90.00177 * 14 12 10 16 16 H 1.48507 * 109.47004 * 210.00251 * 14 12 10 17 17 H 1.48501 * 109.47121 * 330.00303 * 14 12 10 18 18 N 1.28633 * 108.54229 * 359.97438 * 7 6 5 19 19 N 1.28611 * 110.54242 * 359.72165 * 18 7 6 20 20 N 1.31226 * 107.05246 * 180.26606 * 4 3 2 21 21 N 1.28508 * 109.95801 * 359.76248 * 20 4 3 22 22 C 1.31250 * 110.09994 * 0.02562 * 21 20 4 23 23 N 1.38539 * 126.38056 * 179.97438 * 22 21 20 24 24 C 1.46838 * 110.99884 * 294.11783 * 23 22 21 25 25 C 1.50146 * 110.27562 * 174.31296 * 24 23 22 26 26 C 1.29751 * 123.26000 * 342.90181 * 25 24 23 27 27 C 1.50303 * 122.94836 * 0.46305 * 26 25 24 28 28 C 1.47247 * 110.99688 * 57.04796 * 23 22 21 29 29 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47367 * 299.99540 * 1 2 3 31 31 H 1.08997 * 109.47434 * 59.99907 * 1 2 3 32 32 H 1.08998 * 109.47367 * 240.00460 * 2 1 3 33 33 H 1.08995 * 109.46987 * 119.99807 * 2 1 3 34 34 H 1.08000 * 126.99011 * 0.02562 * 6 5 4 35 35 H 1.09003 * 109.46948 * 244.99923 * 8 7 6 36 36 H 1.08999 * 109.46998 * 4.99853 * 8 7 6 37 37 H 1.08997 * 109.46766 * 300.00020 * 9 8 7 38 38 H 1.09006 * 109.46597 * 59.99744 * 9 8 7 39 39 H 0.97007 * 120.00132 * 179.97438 * 13 12 10 40 40 H 1.08997 * 109.33765 * 294.56068 * 24 23 22 41 41 H 1.09004 * 109.33577 * 54.22560 * 24 23 22 42 42 H 1.07995 * 118.35555 * 162.92624 * 25 24 23 43 43 H 1.08008 * 118.49369 * 180.43372 * 26 25 24 44 44 H 1.08999 * 109.43127 * 223.36950 * 27 26 25 45 45 H 1.09007 * 109.42626 * 103.47522 * 27 26 25 46 46 H 1.08997 * 109.63750 * 48.11565 * 28 23 22 47 47 H 1.08994 * 109.80208 * 287.59753 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2562 2.1785 -1.0948 5 6 2.0661 1.8040 -2.5134 6 6 2.3046 2.5865 -3.6087 7 7 1.9897 1.8294 -4.6837 8 6 2.0854 2.2500 -6.0839 9 6 2.9537 1.2554 -6.8570 10 6 3.0515 1.6877 -8.2973 11 1 2.5454 2.5826 -8.6281 12 6 3.7871 0.9407 -9.1927 13 7 3.8730 1.3183 -10.4496 14 14 4.6631 -0.6067 -8.6204 15 1 3.7570 -1.7734 -8.7727 16 1 5.8831 -0.8170 -9.4407 17 1 5.0455 -0.4600 -7.1930 18 7 1.5921 0.6779 -4.2708 19 7 1.6290 0.6216 -2.9864 20 7 2.6884 3.3325 -0.6438 21 7 2.7314 3.3133 0.6404 22 6 2.3302 2.1465 1.0878 23 7 2.2441 1.7609 2.4157 24 6 3.5752 1.6957 3.0321 25 6 3.4548 1.4124 4.5016 26 6 2.3527 1.5682 5.1684 27 6 1.0740 2.0405 4.5352 28 6 1.3760 2.6758 3.1755 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.6702 3.6028 -3.6141 35 1 1.0883 2.2800 -6.5231 36 1 2.5351 3.2416 -6.1354 37 1 3.9507 1.2255 -6.4176 38 1 2.5039 0.2638 -6.8053 39 1 4.3909 0.7930 -11.0796 40 1 4.1541 0.9031 2.5580 41 1 4.0853 2.6487 2.8912 42 1 4.3292 1.0621 5.0298 43 1 2.3546 1.3479 6.2258 44 1 0.5995 2.7778 5.1826 45 1 0.4025 1.1927 4.3982 46 1 0.4454 2.8349 2.6307 47 1 1.8827 3.6297 3.3214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352937745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:00 Heat of formation + Delta-G solvation = 203.847638 kcal Electronic energy + Delta-G solvation = -29288.482688 eV Core-core repulsion = 25317.683864 eV Total energy + Delta-G solvation = -3970.798824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.28958 -42.85763 -39.38894 -35.91444 -35.34680 -34.25257 -32.94321 -31.88604 -31.35737 -30.67202 -30.50997 -28.84714 -26.00258 -25.39852 -24.36189 -23.88511 -23.51975 -22.39275 -21.20318 -21.01690 -20.09314 -18.24782 -17.89282 -17.56899 -16.77599 -16.51444 -16.24453 -16.07146 -15.51000 -15.21573 -15.02391 -14.67039 -14.39925 -14.21253 -14.07554 -13.80171 -13.65677 -13.29542 -12.90138 -12.86286 -12.74605 -12.50331 -12.08645 -11.82962 -11.73942 -11.60846 -11.56935 -11.32966 -11.11506 -11.03459 -10.91768 -10.70600 -10.43265 -10.33909 -10.07776 -10.03192 -9.68398 -9.55222 -9.53362 -9.12535 -8.74499 -8.54130 -6.25596 -4.28636 1.10355 1.80156 1.86637 1.94305 2.27822 2.61361 3.11211 3.20986 3.28747 3.32533 3.32909 3.79130 4.22670 4.28318 4.44606 4.47423 4.64641 4.71814 4.80121 4.84245 4.90304 4.95985 4.98770 5.04846 5.09852 5.11959 5.14540 5.26452 5.35826 5.37282 5.40227 5.51004 5.57847 5.61690 5.62203 5.81268 5.88248 5.94485 5.96226 5.99103 6.08546 6.24437 6.36174 6.47984 6.60640 6.91963 6.97176 6.97902 7.46663 8.21879 8.48444 8.57043 8.73364 9.33920 10.86334 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.024864 B = 0.002076 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.877725 B =13485.583050 C =13524.972470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.108 3.892 3 N -0.447 5.447 4 C 0.283 3.717 5 C 0.021 3.979 6 C 0.009 3.991 7 N -0.269 5.269 8 C 0.119 3.881 9 C -0.021 4.021 10 C -0.532 4.532 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.892 5.892 14 Si 0.879 3.121 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.266 1.266 18 N -0.062 5.062 19 N -0.267 5.267 20 N -0.271 5.271 21 N -0.304 5.304 22 C 0.339 3.661 23 N -0.456 5.456 24 C 0.090 3.910 25 C -0.157 4.157 26 C -0.146 4.146 27 C -0.087 4.087 28 C 0.065 3.935 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.201 0.799 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.025 0.975 38 H 0.033 0.967 39 H 0.267 0.733 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 0.010 30.129 30.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.014 4.014 3 N -0.138 5.138 4 C 0.017 3.983 5 C -0.118 4.118 6 C -0.147 4.147 7 N -0.060 5.060 8 C 0.000 4.000 9 C -0.059 4.059 10 C -0.571 4.571 11 H 0.097 0.903 12 C -0.127 4.127 13 N -0.529 5.529 14 Si 0.705 3.295 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.191 1.191 18 N -0.043 5.043 19 N -0.135 5.135 20 N -0.115 5.115 21 N -0.149 5.149 22 C -0.017 4.017 23 N -0.182 5.182 24 C -0.036 4.036 25 C -0.175 4.175 26 C -0.164 4.164 27 C -0.124 4.124 28 C -0.062 4.062 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.218 0.782 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.135 0.865 43 H 0.128 0.872 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.379 -0.542 29.502 29.993 hybrid contribution 0.831 -0.410 0.332 0.984 sum -4.548 -0.952 29.834 30.193 Atomic orbital electron populations 1.22017 0.93588 1.03369 1.02686 1.21999 0.96226 0.77830 1.05341 1.46414 1.48181 1.14072 1.05174 1.21014 1.02819 0.88399 0.86094 1.18363 1.11157 0.93553 0.88735 1.23565 1.05235 1.00748 0.85105 1.47937 1.38841 1.08975 1.10297 1.22689 1.04288 1.01318 0.71665 1.19888 0.94775 0.94937 0.96298 1.20759 1.33368 1.12449 0.90475 0.90340 1.24914 0.95596 0.97534 0.94639 1.69880 1.40651 1.39397 1.02995 0.86795 0.79664 0.83766 0.79242 1.19842 1.21051 1.19094 1.78240 1.17112 1.03902 1.05015 1.75261 1.17528 1.19062 1.01669 1.74364 1.17950 1.16593 1.02554 1.74552 1.19676 1.17159 1.03537 1.22127 1.03295 0.88226 0.88064 1.59046 1.13616 1.49997 0.95520 1.21051 0.87836 1.02227 0.92514 1.22109 0.98974 1.01998 0.94444 1.22140 0.94612 1.00155 0.99539 1.20593 0.96410 1.01014 0.94425 1.22242 0.96604 0.93668 0.93724 0.90244 0.92319 0.91651 0.87348 0.88483 0.78209 0.88085 0.87533 0.95682 0.94863 0.92272 0.89453 0.91501 0.86491 0.87247 0.89916 0.89855 0.90191 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.11 1.13 6.51 -4.04 -0.03 1.10 16 3 N -0.45 -5.79 2.83 -114.63 -0.32 -6.11 16 4 C 0.28 4.27 7.94 -153.82 -1.22 3.05 16 5 C 0.02 0.33 7.07 -83.21 -0.59 -0.25 16 6 C 0.01 0.14 11.54 -16.62 -0.19 -0.06 16 7 N -0.27 -4.47 3.43 -60.93 -0.21 -4.68 16 8 C 0.12 2.00 6.39 -4.04 -0.03 1.98 16 9 C -0.02 -0.45 4.16 -27.89 -0.12 -0.57 16 10 C -0.53 -13.81 9.66 -34.44 -0.33 -14.14 16 11 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 12 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 13 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 14 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 18 N -0.06 -1.13 12.87 60.35 0.78 -0.36 16 19 N -0.27 -4.46 10.82 33.01 0.36 -4.11 16 20 N -0.27 -4.33 12.21 32.60 0.40 -3.94 16 21 N -0.30 -4.55 12.07 30.34 0.37 -4.19 16 22 C 0.34 4.29 6.42 -318.68 -2.05 2.24 16 23 N -0.46 -4.46 4.73 -175.88 -0.83 -5.30 16 24 C 0.09 0.78 5.59 -5.28 -0.03 0.75 16 25 C -0.16 -1.06 9.92 -35.94 -0.36 -1.41 16 26 C -0.15 -0.89 9.93 -35.87 -0.36 -1.25 16 27 C -0.09 -0.52 6.32 -28.03 -0.18 -0.69 16 28 C 0.06 0.54 5.46 -3.59 -0.02 0.52 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.11 1.26 6.82 -51.93 -0.35 0.90 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.20 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 36 H 0.11 1.56 8.06 -51.93 -0.42 1.14 16 37 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 38 H 0.03 0.75 7.54 -51.93 -0.39 0.36 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.11 0.50 8.06 -52.48 -0.42 0.08 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 47 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -31.43 393.19 -9.67 -41.10 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.03 Total: -1.61 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -5.20 Total: -7.82 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 1.31 Total: -53.87 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.43 -9.67 -41.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352937745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.951 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 213.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 203.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds