Wall clock time and date at job start Wed Apr 1 2020 02:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 119.99976 * 2 1 4 4 N 1.46501 * 109.46997 * 125.97984 * 3 2 1 5 5 C 1.37561 * 127.16529 * 274.33606 * 4 3 2 6 6 C 1.47882 * 126.47169 * 0.04388 * 5 4 3 7 7 N 1.34123 * 125.68038 * 359.69195 * 6 5 4 8 8 C 1.30640 * 109.77718 * 179.81782 * 7 6 5 9 9 N 1.34549 * 108.34138 * 0.43795 * 8 7 6 10 10 C 1.46496 * 126.72810 * 179.75658 * 9 8 7 11 11 N 1.31678 * 125.67590 * 179.97438 * 6 5 4 12 12 N 1.31245 * 107.05612 * 179.89874 * 5 4 3 13 13 N 1.28511 * 109.93641 * 0.38533 * 12 5 4 14 14 C 1.31368 * 110.08120 * 359.75289 * 13 12 5 15 15 N 1.38412 * 126.37098 * 179.97438 * 14 13 12 16 16 C 1.46902 * 111.00074 * 110.64888 * 15 14 13 17 17 C 1.50699 * 109.46767 * 305.34853 * 16 15 14 18 18 H 1.08000 * 120.00381 * 1.32031 * 17 16 15 19 19 C 1.37880 * 119.99955 * 181.32313 * 17 16 15 20 20 N 1.31516 * 119.99999 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00046 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47101 * 89.99555 * 21 19 17 23 23 H 1.48496 * 109.46633 * 209.99553 * 21 19 17 24 24 H 1.48498 * 109.46978 * 329.99714 * 21 19 17 25 25 C 1.46898 * 111.00078 * 346.69378 * 15 14 13 26 26 C 1.53009 * 109.47132 * 195.75897 * 25 15 14 27 27 C 1.52995 * 117.49890 * 245.92565 * 26 25 15 28 28 C 1.52997 * 117.49760 * 177.26523 * 26 25 15 29 29 H 1.08007 * 119.99634 * 179.72669 * 1 2 3 30 30 H 1.07993 * 120.00507 * 359.72618 * 1 2 3 31 31 H 1.07999 * 119.99840 * 180.27322 * 2 1 3 32 32 H 1.08998 * 109.47573 * 245.97896 * 3 2 1 33 33 H 1.09004 * 109.46987 * 5.98328 * 3 2 1 34 34 H 1.07998 * 125.83065 * 180.16902 * 8 7 6 35 35 H 1.09005 * 109.46555 * 270.00043 * 10 9 8 36 36 H 1.08996 * 109.47339 * 29.99344 * 10 9 8 37 37 H 1.08994 * 109.46965 * 150.00062 * 10 9 8 38 38 H 1.09000 * 109.47155 * 65.34679 * 16 15 14 39 39 H 1.08998 * 109.47025 * 185.34640 * 16 15 14 40 40 H 0.96993 * 120.00293 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.47565 * 315.75761 * 25 15 14 42 42 H 1.09002 * 109.47230 * 75.76321 * 25 15 14 43 43 H 1.09000 * 115.54609 * 31.59773 * 26 25 15 44 44 H 1.09003 * 117.49585 * 359.97438 * 27 26 25 45 45 H 1.09002 * 117.49845 * 145.01896 * 27 26 25 46 46 H 1.08998 * 117.49974 * 214.97833 * 28 26 25 47 47 H 1.09003 * 117.50016 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0104 1.3222 1.1177 5 6 2.7565 1.6984 2.4163 6 6 1.4630 2.1671 2.9588 7 7 0.3260 2.3052 2.2610 8 6 -0.6251 2.7357 3.0464 9 7 -0.1147 2.8960 4.2809 10 6 -0.8293 3.3664 5.4701 11 7 1.2373 2.5232 4.2063 12 7 3.8781 1.5599 3.0835 13 7 4.8046 1.1366 2.3001 14 6 4.3295 0.9741 1.0861 15 7 5.0357 0.5326 -0.0194 16 6 4.5929 -0.8078 -0.4260 17 6 4.6924 -1.7472 0.7482 18 1 5.0285 -1.3801 1.7066 19 6 4.3543 -3.0756 0.5988 20 7 3.9446 -3.5227 -0.5682 21 14 4.4769 -4.2399 2.0545 22 1 3.1867 -4.2510 2.7895 23 1 4.7814 -5.6096 1.5683 24 1 5.5601 -3.7847 2.9626 25 6 6.4820 0.5542 0.2367 26 6 7.2365 0.4468 -1.0901 27 6 8.0671 -0.8154 -1.3303 28 6 8.7641 0.5166 -1.0417 29 1 -0.5400 -0.9354 -0.0045 30 1 -0.5400 0.9352 0.0045 31 1 1.8499 -0.9353 -0.0045 32 1 2.6074 1.4106 -0.9386 33 1 1.3599 2.1308 0.1071 34 1 -1.6456 2.9337 2.7536 35 1 -0.7528 4.4519 5.5342 36 1 -1.8786 3.0797 5.4006 37 1 -0.3882 2.9178 6.3601 38 1 3.5588 -0.7610 -0.7672 39 1 5.2267 -1.1697 -1.2356 40 1 3.7064 -4.4570 -0.6732 41 1 6.7494 1.4875 0.7322 42 1 6.7503 -0.2867 0.8763 43 1 6.7393 0.8936 -1.9511 44 1 8.0764 -1.5691 -0.5429 45 1 8.1168 -1.1989 -2.3494 46 1 9.2720 1.0088 -1.8710 47 1 9.2316 0.6394 -0.0647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356167242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:37 Heat of formation + Delta-G solvation = 222.223027 kcal Electronic energy + Delta-G solvation = -30850.906955 eV Core-core repulsion = 26880.904948 eV Total energy + Delta-G solvation = -3970.002007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.94415 -42.96685 -39.43616 -37.33115 -36.83566 -35.13026 -34.66292 -33.59924 -32.70285 -30.84590 -29.46338 -28.18800 -27.72382 -27.05342 -24.89051 -24.23090 -23.10841 -23.04724 -21.99540 -21.69285 -20.86270 -20.61737 -18.85546 -18.46799 -17.73967 -17.49879 -17.14310 -16.99132 -16.60332 -16.14806 -16.12016 -15.70853 -15.56284 -15.30520 -14.78689 -14.64371 -14.36586 -13.99487 -13.98446 -13.71968 -13.31366 -13.19204 -13.15709 -12.73583 -12.71765 -12.62936 -12.41316 -12.29221 -12.24618 -12.08829 -11.96144 -11.57989 -11.32798 -11.18579 -11.15673 -10.98965 -10.92757 -10.72161 -10.64410 -10.38370 -10.21578 -9.14646 -8.26303 -6.36968 0.04985 0.81667 1.03953 1.23409 1.26588 1.34855 1.37344 1.58056 1.77717 2.23030 2.30026 2.62807 2.90557 3.04505 3.13849 3.39996 3.78729 3.91922 3.94521 3.98819 4.04294 4.09669 4.22996 4.26523 4.33068 4.48699 4.55848 4.61008 4.66383 4.75315 4.76378 4.85846 4.89551 4.93626 4.98755 5.05279 5.10652 5.14616 5.20169 5.27381 5.36229 5.40463 5.53813 5.66464 5.78318 5.79699 5.88866 5.94434 6.01335 6.37503 6.74540 6.91334 7.31102 7.67871 8.78591 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.010869 B = 0.004014 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.501261 B = 6973.830510 C = 7886.913212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.199 4.199 3 C 0.153 3.847 4 N -0.449 5.449 5 C 0.231 3.769 6 C 0.292 3.708 7 N -0.548 5.548 8 C 0.276 3.724 9 N -0.378 5.378 10 C 0.087 3.913 11 N -0.309 5.309 12 N -0.282 5.282 13 N -0.360 5.360 14 C 0.414 3.586 15 N -0.454 5.454 16 C 0.207 3.793 17 C -0.551 4.551 18 H 0.041 0.959 19 C 0.038 3.962 20 N -0.905 5.905 21 Si 0.930 3.070 22 H -0.285 1.285 23 H -0.268 1.268 24 H -0.281 1.281 25 C 0.113 3.887 26 C -0.150 4.150 27 C -0.181 4.181 28 C -0.152 4.152 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.286 0.714 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.084 0.916 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.266 0.734 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.113 0.887 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.119 0.881 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 14.519 1.852 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.218 4.218 3 C 0.032 3.968 4 N -0.142 5.142 5 C -0.038 4.038 6 C 0.011 3.989 7 N -0.277 5.277 8 C -0.019 4.019 9 N -0.170 5.170 10 C -0.052 4.052 11 N -0.142 5.142 12 N -0.125 5.125 13 N -0.207 5.207 14 C 0.057 3.943 15 N -0.177 5.177 16 C 0.082 3.918 17 C -0.590 4.590 18 H 0.059 0.941 19 C -0.163 4.163 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.212 1.212 23 H -0.193 1.193 24 H -0.206 1.206 25 C -0.014 4.014 26 C -0.169 4.169 27 C -0.219 4.219 28 C -0.189 4.189 29 H 0.118 0.882 30 H 0.149 0.851 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.145 0.855 34 H 0.301 0.699 35 H 0.118 0.882 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.131 0.869 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.138 0.862 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.432 14.653 2.762 18.789 hybrid contribution -0.600 -1.801 0.535 1.972 sum -12.032 12.853 3.296 17.912 Atomic orbital electron populations 1.23982 0.94262 1.03135 0.95172 1.22980 0.97343 0.96953 1.04487 1.21127 0.90679 0.98349 0.86624 1.46104 1.09286 1.48884 1.09913 1.20616 0.93498 1.07608 0.82042 1.19735 0.90058 1.00567 0.88575 1.70398 0.98228 1.24437 1.34649 1.27142 1.01474 0.93218 0.80059 1.50789 1.05637 1.48224 1.12302 1.22472 0.97503 1.01790 0.83475 1.78422 0.95917 1.21928 1.17908 1.74134 0.96622 1.16129 1.25645 1.74598 1.24278 1.23480 0.98318 1.22582 0.82775 0.97295 0.91684 1.59263 1.05656 1.27763 1.25054 1.19790 0.96681 0.80009 0.95282 1.21778 1.45396 0.95148 0.96694 0.94125 1.25315 0.94688 0.99001 0.97323 1.69967 1.44836 1.16060 1.23521 0.85996 0.77986 0.79564 0.80811 1.21180 1.19269 1.20647 1.21398 0.83218 1.00772 0.95985 1.22081 0.93408 1.03465 0.97953 1.22968 1.04970 0.91417 1.02494 1.23042 0.92596 0.99475 1.03794 0.88166 0.85053 0.90036 0.88033 0.85478 0.69938 0.88244 0.84338 0.89700 0.94777 0.93906 0.92428 0.91007 0.94698 0.86927 0.90863 0.88102 0.86244 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 14.29 67.78 0.97 -2.60 16 2 C -0.20 -7.21 9.13 25.65 0.23 -6.98 16 3 C 0.15 5.29 5.45 85.63 0.47 5.76 16 4 N -0.45 -19.09 2.81 -520.79 -1.47 -20.55 16 5 C 0.23 10.14 8.00 136.23 1.09 11.23 16 6 C 0.29 10.54 7.97 137.21 1.09 11.63 16 7 N -0.55 -14.64 9.47 -193.38 -1.83 -16.48 16 8 C 0.28 4.35 12.64 180.38 2.28 6.63 16 9 N -0.38 -7.24 4.04 -373.68 -1.51 -8.75 16 10 C 0.09 0.61 11.52 127.77 1.47 2.09 16 11 N -0.31 -10.27 12.74 -52.58 -0.67 -10.94 16 12 N -0.28 -14.01 12.22 -50.79 -0.62 -14.63 16 13 N -0.36 -18.37 10.89 -58.02 -0.63 -19.00 16 14 C 0.41 19.55 5.58 260.12 1.45 21.00 16 15 N -0.45 -20.41 4.67 -710.37 -3.32 -23.73 16 16 C 0.21 10.41 4.95 85.56 0.42 10.83 16 17 C -0.55 -31.18 7.56 25.60 0.19 -30.99 16 18 H 0.04 2.50 6.55 -2.91 -0.02 2.48 16 19 C 0.04 2.16 5.46 84.66 0.46 2.62 16 20 N -0.90 -51.55 13.29 21.45 0.28 -51.26 16 21 Si 0.93 46.53 29.54 68.60 2.03 48.56 16 22 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 25 C 0.11 4.75 4.62 86.31 0.40 5.15 16 26 C -0.15 -5.16 5.00 -10.79 -0.05 -5.22 16 27 C -0.18 -6.03 10.09 30.62 0.31 -5.72 16 28 C -0.15 -4.16 10.25 30.62 0.31 -3.84 16 29 H 0.10 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.13 2.83 7.84 -2.91 -0.02 2.81 16 31 H 0.08 3.83 6.61 -2.91 -0.02 3.81 16 32 H 0.10 3.43 8.09 -2.39 -0.02 3.41 16 33 H 0.13 3.72 6.52 -2.38 -0.02 3.71 16 34 H 0.29 0.35 8.06 -2.91 -0.02 0.33 16 35 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.14 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.03 1.78 5.03 -2.39 -0.01 1.77 16 39 H 0.04 2.25 7.20 -2.39 -0.02 2.23 16 40 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.07 2.94 7.73 -2.39 -0.02 2.93 16 42 H 0.03 1.67 6.64 -2.39 -0.02 1.66 16 43 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 44 H 0.07 2.79 8.04 -2.39 -0.02 2.77 16 45 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 46 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -81.93 395.19 4.36 -77.57 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.99 Total: 17.63 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 11.10 Total: 21.58 kcal Atomic # 7 Polarization: -155.57 SS G_CDS: -9.76 Total: -165.33 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -81.93 4.36 -77.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356167242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 299.789 kcal (2) G-P(sol) polarization free energy of solvation -81.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 217.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 222.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds