Wall clock time and date at job start Wed Apr 1 2020 02:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.46944 * 2 1 4 4 C 1.42896 * 113.99802 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47253 * 329.99767 * 4 3 2 6 6 C 1.53003 * 109.47270 * 89.99837 * 4 3 2 7 7 C 1.50701 * 109.47120 * 210.00131 * 4 3 2 8 8 O 1.21275 * 119.99958 * 355.00033 * 7 4 3 9 9 N 1.34778 * 119.99806 * 175.00209 * 7 4 3 10 10 C 1.46505 * 119.99826 * 180.02562 * 9 7 4 11 11 C 1.52997 * 109.46959 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.51121 * 305.08409 * 11 10 9 13 13 C 1.53099 * 109.50796 * 184.99797 * 11 10 9 14 14 N 1.47016 * 109.26093 * 183.17609 * 13 11 10 15 15 C 1.46901 * 110.99837 * 182.39415 * 14 13 11 16 16 C 1.50701 * 109.46921 * 169.99736 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47268 * 89.99721 * 23 21 19 25 25 H 1.48498 * 109.47211 * 209.99980 * 23 21 19 26 26 H 1.48505 * 109.46734 * 329.99774 * 23 21 19 27 27 C 1.47006 * 110.75221 * 58.61573 * 14 13 11 28 28 C 1.53101 * 109.26190 * 301.38329 * 27 14 13 29 29 O 1.43020 * 109.25617 * 56.84928 * 28 27 14 30 30 H 1.08994 * 109.47084 * 300.00426 * 1 2 3 31 31 H 1.09008 * 109.46820 * 60.00196 * 1 2 3 32 32 H 1.08994 * 109.47185 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47186 * 239.99846 * 2 1 3 34 34 H 1.08997 * 109.46358 * 119.99757 * 2 1 3 35 35 H 1.08997 * 109.47305 * 179.97438 * 6 4 3 36 36 H 1.08996 * 109.47199 * 300.00526 * 6 4 3 37 37 H 1.08999 * 109.46489 * 60.00271 * 6 4 3 38 38 H 0.97000 * 120.00281 * 359.97438 * 9 7 4 39 39 H 1.08994 * 109.47299 * 59.99993 * 10 9 7 40 40 H 1.08994 * 109.46782 * 299.99474 * 10 9 7 41 41 H 1.08996 * 109.50402 * 63.23747 * 13 11 10 42 42 H 1.08999 * 109.54212 * 303.13263 * 13 11 10 43 43 H 1.09002 * 109.47401 * 49.99764 * 15 14 13 44 44 H 1.09001 * 109.46874 * 289.99776 * 15 14 13 45 45 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 46 46 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.50801 * 61.32202 * 27 14 13 48 48 H 1.08998 * 109.50572 * 181.45188 * 27 14 13 49 49 H 1.09002 * 109.50522 * 296.91967 * 28 27 14 50 50 H 1.08993 * 109.54601 * 176.80294 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5148 6 6 3.9399 1.5001 -1.4417 7 6 3.8342 2.7265 0.7110 8 8 2.9856 3.5049 1.0915 9 7 5.1379 2.9940 0.9234 10 6 5.5300 4.2248 1.6146 11 6 7.0548 4.2839 1.7254 12 1 7.4201 3.3778 2.2088 13 6 7.4602 5.5050 2.5552 14 7 8.9268 5.5994 2.5944 15 6 9.3595 6.7278 3.4297 16 6 10.8486 6.6495 3.6475 17 8 11.4867 5.7432 3.1549 18 7 11.4714 7.5872 4.3887 19 6 12.8262 7.5163 4.5864 20 1 13.3943 6.7088 4.1484 21 6 13.4683 8.4825 5.3510 22 7 12.7770 9.4648 5.8842 23 14 15.3143 8.3864 5.6197 24 1 16.0111 9.1326 4.5414 25 1 15.6548 8.9848 6.9355 26 1 15.7446 6.9652 5.5961 27 6 9.4783 5.7076 1.2361 28 6 9.0528 4.4845 0.4194 29 8 7.6257 4.3912 0.4184 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 5.0265 1.5867 -1.4413 36 1 3.6482 0.5842 -1.9555 37 1 3.5077 2.3586 -1.9558 38 1 5.8167 2.3713 0.6194 39 1 5.0929 4.2360 2.6129 40 1 5.1726 5.0871 1.0517 41 1 7.0749 5.3999 3.5694 42 1 7.0494 6.4069 2.1015 43 1 8.8488 6.6845 4.3917 44 1 9.1140 7.6648 2.9299 45 1 10.9611 8.3121 4.7823 46 1 13.2253 10.1395 6.4177 47 1 9.0999 6.6124 0.7605 48 1 10.5663 5.7504 1.2873 49 1 9.4761 3.5842 0.8649 50 1 9.4115 4.5871 -0.6047 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482182141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:13 Heat of formation + Delta-G solvation = -156.724470 kcal Electronic energy + Delta-G solvation = -29948.624118 eV Core-core repulsion = 25590.295292 eV Total energy + Delta-G solvation = -4358.328826 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.37317 -39.67876 -38.24038 -37.93450 -35.50167 -34.93566 -33.86472 -33.00917 -31.61123 -31.29589 -30.37308 -29.06898 -27.07434 -25.32115 -24.45412 -23.81972 -23.12476 -22.38367 -20.92920 -20.15967 -19.25565 -17.95373 -17.70774 -17.44236 -16.69825 -16.37741 -16.07168 -15.99166 -15.66475 -15.18124 -15.11276 -14.93327 -14.72752 -14.23290 -14.08127 -13.79414 -13.71268 -13.59136 -13.48741 -13.28846 -13.05229 -12.69102 -12.64572 -12.40477 -12.34836 -12.02243 -11.78406 -11.73586 -11.54995 -11.47437 -11.27423 -11.23140 -10.96047 -10.55523 -10.42083 -10.30973 -10.25861 -9.82245 -9.67843 -9.51428 -9.33459 -8.51723 -8.04827 -7.95735 -6.45548 -3.86725 2.35865 2.51025 3.14799 3.24020 3.29385 3.46065 3.59494 3.81636 3.86618 4.18416 4.31115 4.46666 4.53409 4.67249 4.69030 4.79573 4.83054 4.92280 4.93187 5.00326 5.05451 5.15103 5.20649 5.25032 5.32917 5.33345 5.35581 5.49280 5.50613 5.52822 5.60359 5.67813 5.73727 5.75446 5.80279 5.83767 6.06886 6.11461 6.20794 6.25758 6.67118 7.03414 7.09632 7.21749 7.24804 7.51344 7.96671 8.01722 8.56886 9.13687 9.49631 10.00788 10.72012 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.036409 B = 0.001594 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.855704 B =17562.475620 C =17913.716982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.072 3.928 5 H 0.086 0.914 6 C -0.170 4.170 7 C 0.514 3.486 8 O -0.521 6.521 9 N -0.721 5.721 10 C 0.131 3.869 11 C 0.085 3.915 12 H 0.075 0.925 13 C 0.025 3.975 14 N -0.512 5.512 15 C 0.046 3.954 16 C 0.443 3.557 17 O -0.580 6.580 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C 0.014 3.986 28 C 0.069 3.931 29 O -0.385 6.385 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.404 0.596 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.033 0.967 48 H 0.114 0.886 49 H 0.062 0.938 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.871 -15.853 -11.833 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.011 3.989 5 H 0.104 0.896 6 C -0.228 4.228 7 C 0.298 3.702 8 O -0.395 6.395 9 N -0.375 5.375 10 C 0.007 3.993 11 C 0.026 3.974 12 H 0.093 0.907 13 C -0.104 4.104 14 N -0.237 5.237 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.464 6.464 18 N -0.198 5.198 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.114 4.114 28 C -0.008 4.008 29 O -0.304 6.304 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.239 0.761 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.051 0.949 48 H 0.132 0.868 49 H 0.080 0.920 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.057 -15.988 -11.709 27.494 hybrid contribution 1.041 0.824 0.246 1.350 sum -18.017 -15.164 -11.463 26.191 Atomic orbital electron populations 1.21731 0.93363 1.02254 1.03482 1.22604 0.96037 0.83470 1.00114 1.88064 1.18296 1.26370 1.94940 1.21859 0.83858 0.96389 0.96835 0.89623 1.22234 1.01899 1.03788 0.94894 1.20362 0.82487 0.87761 0.79562 1.90732 1.50146 1.48790 1.49876 1.45790 1.07098 1.24195 1.60371 1.21356 0.92299 0.87432 0.98206 1.22300 0.91917 0.98516 0.84637 0.90696 1.22674 0.89474 0.97380 1.00865 1.61780 1.06627 1.43393 1.11904 1.21874 0.96597 0.91883 0.98161 1.19682 0.88091 0.84916 0.84457 1.90472 1.66802 1.35851 1.53301 1.41866 1.08665 1.24221 1.45094 1.19696 0.82786 1.10774 1.29734 0.87880 1.25265 1.00577 0.95430 0.96588 1.69613 1.36721 1.13545 1.34294 0.85855 0.82132 0.78690 0.77593 1.20411 1.20902 1.19401 1.22965 1.03843 0.96817 0.87769 1.22683 0.79769 0.97951 1.00385 1.87945 1.21119 1.94614 1.26734 0.91612 0.91726 0.90986 0.93160 0.93195 0.90660 0.91228 0.90995 0.76125 0.89668 0.90432 0.89444 0.93796 0.89139 0.93236 0.77458 0.91824 0.94900 0.86756 0.91993 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.36 6.47 37.16 0.24 0.60 16 3 O -0.36 -3.69 9.53 -55.09 -0.52 -4.22 16 4 C 0.07 0.59 3.13 -27.88 -0.09 0.51 16 5 H 0.09 0.48 7.79 -51.93 -0.40 0.08 16 6 C -0.17 -1.08 9.48 37.16 0.35 -0.73 16 7 C 0.51 5.71 7.18 -10.98 -0.08 5.64 16 8 O -0.52 -8.17 16.51 -14.30 -0.24 -8.41 16 9 N -0.72 -6.56 5.47 -60.30 -0.33 -6.89 16 10 C 0.13 1.32 5.35 -4.04 -0.02 1.30 16 11 C 0.08 0.92 2.84 -26.68 -0.08 0.85 16 12 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 13 C 0.03 0.31 4.93 -3.71 -0.02 0.29 16 14 N -0.51 -8.16 4.46 -235.75 -1.05 -9.21 16 15 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 16 C 0.44 10.12 7.49 -10.98 -0.08 10.04 16 17 O -0.58 -14.98 13.92 5.55 0.08 -14.91 16 18 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 19 C -0.30 -8.20 9.68 -14.94 -0.14 -8.35 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 23 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 C 0.01 0.21 5.29 -3.71 -0.02 0.19 16 28 C 0.07 0.86 7.01 37.21 0.26 1.12 16 29 O -0.38 -4.64 10.42 -35.23 -0.37 -5.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.25 7.87 -51.93 -0.41 -0.16 16 34 H 0.05 0.28 8.08 -51.93 -0.42 -0.14 16 35 H 0.07 0.38 7.92 -51.93 -0.41 -0.03 16 36 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.40 2.78 8.26 -40.82 -0.34 2.45 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 1.41 8.04 -51.93 -0.42 0.99 16 44 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 45 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 46 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.11 2.13 5.88 -51.93 -0.31 1.83 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 410.43 15.07 6.19 6.19 Total: -1.00 -34.16 410.43 -8.46 -42.62 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.44 Total: 9.33 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 0.58 Total: 12.23 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.71 Total: -53.51 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.05 Total: -32.54 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.16 -8.46 -42.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482182141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.102 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds