Wall clock time and date at job start Wed Apr 1 2020 02:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.46944 * 2 1 4 4 C 1.42896 * 113.99802 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47253 * 329.99767 * 4 3 2 6 6 C 1.53003 * 109.47270 * 89.99837 * 4 3 2 7 7 C 1.50701 * 109.47120 * 210.00131 * 4 3 2 8 8 O 1.21275 * 119.99958 * 355.00033 * 7 4 3 9 9 N 1.34778 * 119.99806 * 175.00209 * 7 4 3 10 10 C 1.46505 * 119.99826 * 180.02562 * 9 7 4 11 11 C 1.52997 * 109.46959 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.51121 * 305.08409 * 11 10 9 13 13 C 1.53099 * 109.50796 * 184.99797 * 11 10 9 14 14 N 1.47016 * 109.26093 * 183.17609 * 13 11 10 15 15 C 1.46901 * 110.99837 * 182.39415 * 14 13 11 16 16 C 1.50701 * 109.46921 * 169.99736 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47268 * 89.99721 * 23 21 19 25 25 H 1.48498 * 109.47211 * 209.99980 * 23 21 19 26 26 H 1.48505 * 109.46734 * 329.99774 * 23 21 19 27 27 C 1.47006 * 110.75221 * 58.61573 * 14 13 11 28 28 C 1.53101 * 109.26190 * 301.38329 * 27 14 13 29 29 O 1.43020 * 109.25617 * 56.84928 * 28 27 14 30 30 H 1.08994 * 109.47084 * 300.00426 * 1 2 3 31 31 H 1.09008 * 109.46820 * 60.00196 * 1 2 3 32 32 H 1.08994 * 109.47185 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47186 * 239.99846 * 2 1 3 34 34 H 1.08997 * 109.46358 * 119.99757 * 2 1 3 35 35 H 1.08997 * 109.47305 * 179.97438 * 6 4 3 36 36 H 1.08996 * 109.47199 * 300.00526 * 6 4 3 37 37 H 1.08999 * 109.46489 * 60.00271 * 6 4 3 38 38 H 0.97000 * 120.00281 * 359.97438 * 9 7 4 39 39 H 1.08994 * 109.47299 * 59.99993 * 10 9 7 40 40 H 1.08994 * 109.46782 * 299.99474 * 10 9 7 41 41 H 1.08996 * 109.50402 * 63.23747 * 13 11 10 42 42 H 1.08999 * 109.54212 * 303.13263 * 13 11 10 43 43 H 1.09002 * 109.47401 * 49.99764 * 15 14 13 44 44 H 1.09001 * 109.46874 * 289.99776 * 15 14 13 45 45 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 46 46 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.50801 * 61.32202 * 27 14 13 48 48 H 1.08998 * 109.50572 * 181.45188 * 27 14 13 49 49 H 1.09002 * 109.50522 * 296.91967 * 28 27 14 50 50 H 1.08993 * 109.54601 * 176.80294 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5148 6 6 3.9399 1.5001 -1.4417 7 6 3.8342 2.7265 0.7110 8 8 2.9856 3.5049 1.0915 9 7 5.1379 2.9940 0.9234 10 6 5.5300 4.2248 1.6146 11 6 7.0548 4.2839 1.7254 12 1 7.4201 3.3778 2.2088 13 6 7.4602 5.5050 2.5552 14 7 8.9268 5.5994 2.5944 15 6 9.3595 6.7278 3.4297 16 6 10.8486 6.6495 3.6475 17 8 11.4867 5.7432 3.1549 18 7 11.4714 7.5872 4.3887 19 6 12.8262 7.5163 4.5864 20 1 13.3943 6.7088 4.1484 21 6 13.4683 8.4825 5.3510 22 7 12.7770 9.4648 5.8842 23 14 15.3143 8.3864 5.6197 24 1 16.0111 9.1326 4.5414 25 1 15.6548 8.9848 6.9355 26 1 15.7446 6.9652 5.5961 27 6 9.4783 5.7076 1.2361 28 6 9.0528 4.4845 0.4194 29 8 7.6257 4.3912 0.4184 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 5.0265 1.5867 -1.4413 36 1 3.6482 0.5842 -1.9555 37 1 3.5077 2.3586 -1.9558 38 1 5.8167 2.3713 0.6194 39 1 5.0929 4.2360 2.6129 40 1 5.1726 5.0871 1.0517 41 1 7.0749 5.3999 3.5694 42 1 7.0494 6.4069 2.1015 43 1 8.8488 6.6845 4.3917 44 1 9.1140 7.6648 2.9299 45 1 10.9611 8.3121 4.7823 46 1 13.2253 10.1395 6.4177 47 1 9.0999 6.6124 0.7605 48 1 10.5663 5.7504 1.2873 49 1 9.4761 3.5842 0.8649 50 1 9.4115 4.5871 -0.6047 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482182141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:12 Heat of formation + Delta-G solvation = -183.918201 kcal Electronic energy + Delta-G solvation = -29949.803327 eV Core-core repulsion = 25590.295292 eV Total energy + Delta-G solvation = -4359.508034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27716 -40.77649 -39.77202 -38.73498 -36.76780 -35.92883 -35.73860 -33.65027 -33.28246 -32.42879 -30.97483 -30.37272 -28.20996 -26.81502 -25.37852 -25.04883 -23.72870 -23.30968 -21.84712 -21.11586 -21.01561 -19.87926 -18.51286 -18.15977 -17.87798 -17.50148 -17.11635 -16.93753 -16.59615 -16.48893 -16.40230 -15.97431 -15.89067 -15.70213 -15.42694 -15.12855 -14.75401 -14.65456 -14.34623 -14.20519 -13.92547 -13.66987 -13.49400 -13.34623 -13.24291 -13.19155 -13.01051 -12.87598 -12.85558 -12.42332 -12.35726 -12.28773 -12.23450 -12.11731 -12.02051 -11.61117 -11.43223 -11.01710 -10.80488 -10.48621 -10.21773 -10.17462 -10.00029 -9.33216 -8.46403 -5.95128 1.38057 1.42236 1.53614 1.54678 1.79129 2.04445 2.27640 2.57857 2.68086 2.94850 3.20403 3.34222 3.64109 3.78219 3.87924 3.94034 3.99860 4.03036 4.09130 4.17811 4.21151 4.31703 4.33964 4.41894 4.47108 4.49709 4.50240 4.57429 4.61464 4.62949 4.64818 4.79507 4.89028 4.90334 4.95445 5.02919 5.02979 5.20752 5.27798 5.32276 5.41171 5.77596 5.96060 6.05327 6.12033 6.15504 6.51768 6.60118 7.12862 7.18113 7.56172 8.11228 8.70906 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.036409 B = 0.001594 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.855704 B =17562.475620 C =17913.716982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.393 6.393 4 C 0.072 3.928 5 H 0.117 0.883 6 C -0.165 4.165 7 C 0.510 3.490 8 O -0.575 6.575 9 N -0.708 5.708 10 C 0.137 3.863 11 C 0.092 3.908 12 H 0.083 0.917 13 C 0.024 3.976 14 N -0.527 5.527 15 C 0.057 3.943 16 C 0.442 3.558 17 O -0.612 6.612 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.081 0.919 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.272 1.272 27 C 0.014 3.986 28 C 0.078 3.922 29 O -0.385 6.385 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.417 0.583 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.048 0.952 43 H 0.113 0.887 44 H 0.065 0.935 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.034 0.966 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.188 -17.263 -12.271 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.313 6.313 4 C 0.011 3.989 5 H 0.135 0.865 6 C -0.222 4.222 7 C 0.296 3.704 8 O -0.453 6.453 9 N -0.362 5.362 10 C 0.012 3.988 11 C 0.034 3.966 12 H 0.101 0.899 13 C -0.104 4.104 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.230 3.770 17 O -0.498 6.498 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.099 0.901 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.114 4.114 28 C 0.001 3.999 29 O -0.304 6.304 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.254 0.746 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.123 0.877 42 H 0.066 0.934 43 H 0.131 0.869 44 H 0.083 0.917 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.053 0.947 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.370 -17.418 -12.161 28.749 hybrid contribution 1.091 1.221 0.354 1.675 sum -18.280 -16.197 -11.807 27.127 Atomic orbital electron populations 1.21773 0.93342 1.03414 1.02374 1.22827 0.96195 0.82258 1.01574 1.88031 1.19474 1.28596 1.95176 1.22001 0.83430 0.95619 0.97814 0.86549 1.22222 1.02672 1.03865 0.93487 1.21008 0.82309 0.88251 0.78817 1.90704 1.51601 1.50741 1.52300 1.45697 1.07017 1.23938 1.59509 1.21236 0.91570 0.87486 0.98462 1.22280 0.92151 0.98151 0.84019 0.89924 1.22789 0.86992 0.98248 1.02365 1.61751 1.08935 1.42705 1.11860 1.21752 0.92364 0.93344 0.99959 1.20668 0.90380 0.83460 0.82522 1.90452 1.68397 1.36940 1.54055 1.41936 1.08106 1.25026 1.46041 1.19666 0.84200 1.11096 1.31197 0.90132 1.26024 1.04661 0.94737 0.95800 1.69677 1.38252 1.13852 1.34422 0.84933 0.77015 0.78465 0.77967 1.19698 1.19702 1.19683 1.22887 1.01687 0.98524 0.88294 1.22623 0.80049 0.96278 1.00941 1.87956 1.20638 1.94477 1.27331 0.93118 0.92432 0.88676 0.91141 0.92125 0.89067 0.89319 0.93025 0.74560 0.89087 0.91698 0.87729 0.93402 0.86882 0.91703 0.77093 0.91358 0.94730 0.90353 0.92217 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.05 0.55 6.47 71.98 0.47 1.01 16 3 O -0.39 -7.76 9.53 -129.99 -1.24 -9.00 16 4 C 0.07 1.06 3.13 29.85 0.09 1.15 16 5 H 0.12 0.95 7.79 -2.39 -0.02 0.93 16 6 C -0.16 -1.73 9.48 71.98 0.68 -1.05 16 7 C 0.51 10.85 7.18 87.66 0.63 11.48 16 8 O -0.57 -18.20 16.51 15.98 0.26 -17.94 16 9 N -0.71 -11.59 5.47 -463.07 -2.53 -14.12 16 10 C 0.14 2.54 5.35 86.38 0.46 3.00 16 11 C 0.09 1.81 2.84 30.63 0.09 1.90 16 12 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 13 C 0.02 0.55 4.93 86.31 0.43 0.98 16 14 N -0.53 -16.16 4.46 -899.79 -4.01 -20.17 16 15 C 0.06 1.91 5.45 85.56 0.47 2.38 16 16 C 0.44 20.45 7.49 87.66 0.66 21.11 16 17 O -0.61 -32.43 13.92 -3.07 -0.04 -32.48 16 18 N -0.57 -28.92 5.29 -306.98 -1.62 -30.54 16 19 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 22 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 23 Si 0.99 42.39 29.55 68.60 2.03 44.41 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 C 0.01 0.43 5.29 86.32 0.46 0.89 16 28 C 0.08 1.83 7.01 72.02 0.50 2.34 16 29 O -0.38 -8.44 10.42 -148.98 -1.55 -9.99 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.52 7.87 -2.39 -0.02 0.50 16 34 H 0.06 0.56 8.08 -2.39 -0.02 0.54 16 35 H 0.09 0.64 7.92 -2.39 -0.02 0.63 16 36 H 0.09 0.60 7.87 -2.39 -0.02 0.58 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.42 4.63 8.26 -92.71 -0.77 3.86 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.10 2.02 8.09 -2.39 -0.02 2.00 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.11 3.30 8.04 -2.39 -0.02 3.28 16 44 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 45 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 46 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 47 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.08 2.99 5.88 -2.39 -0.01 2.98 16 49 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -75.96 410.43 -2.03 -77.99 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.55 Total: 34.53 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 6.95 Total: 26.32 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -7.89 Total: -113.85 kcal Atomic # 8 Polarization: -66.83 SS G_CDS: -2.57 Total: -69.40 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -75.96 -2.03 -77.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482182141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.929 kcal (2) G-P(sol) polarization free energy of solvation -75.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds