Wall clock time and date at job start Wed Apr 1 2020 02:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47124 * 2 1 4 4 C 1.42903 * 114.00174 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46911 * 330.00149 * 4 3 2 6 6 C 1.52993 * 109.46973 * 90.00261 * 4 3 2 7 7 C 1.50692 * 109.47094 * 210.00489 * 4 3 2 8 8 O 1.21282 * 120.00365 * 355.00055 * 7 4 3 9 9 N 1.34781 * 120.00056 * 174.99932 * 7 4 3 10 10 C 1.46498 * 120.00146 * 179.97438 * 9 7 4 11 11 C 1.52998 * 109.47176 * 179.97438 * 10 9 7 12 12 H 1.09009 * 109.50212 * 60.09106 * 11 10 9 13 13 C 1.53093 * 109.50862 * 180.21659 * 11 10 9 14 14 N 1.47017 * 109.25905 * 176.78583 * 13 11 10 15 15 C 1.46902 * 111.00134 * 177.60987 * 14 13 11 16 16 C 1.50694 * 109.47494 * 189.99868 * 15 14 13 17 17 O 1.21299 * 119.99680 * 6.27929 * 16 15 14 18 18 N 1.34777 * 120.00521 * 186.27530 * 16 15 14 19 19 C 1.37094 * 120.00274 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99711 * 0.02562 * 19 18 16 21 21 C 1.38944 * 120.00210 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00309 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99858 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47228 * 89.99840 * 23 21 19 25 25 H 1.48497 * 109.47341 * 209.99737 * 23 21 19 26 26 H 1.48506 * 109.47408 * 330.00068 * 23 21 19 27 27 C 1.47015 * 110.75345 * 301.38738 * 14 13 11 28 28 C 1.53091 * 109.25712 * 58.61368 * 27 14 13 29 29 O 1.43013 * 109.50986 * 300.00425 * 11 10 9 30 30 H 1.08999 * 109.47191 * 299.99497 * 1 2 3 31 31 H 1.09001 * 109.47095 * 60.00089 * 1 2 3 32 32 H 1.09005 * 109.46855 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46725 * 240.00268 * 2 1 3 34 34 H 1.08997 * 109.47165 * 120.00850 * 2 1 3 35 35 H 1.09001 * 109.47393 * 60.00184 * 6 4 3 36 36 H 1.08998 * 109.47109 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.47452 * 300.00058 * 6 4 3 38 38 H 0.96999 * 119.99459 * 0.02562 * 9 7 4 39 39 H 1.08995 * 109.47285 * 300.00134 * 10 9 7 40 40 H 1.09007 * 109.46806 * 60.00286 * 10 9 7 41 41 H 1.08996 * 109.50897 * 296.72354 * 13 11 10 42 42 H 1.09005 * 109.50576 * 56.85211 * 13 11 10 43 43 H 1.09007 * 109.47164 * 310.00031 * 15 14 13 44 44 H 1.08996 * 109.46905 * 69.99796 * 15 14 13 45 45 H 0.96993 * 119.99296 * 0.02562 * 18 16 15 46 46 H 0.97001 * 120.00228 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.50804 * 298.68047 * 27 14 13 48 48 H 1.09001 * 109.50366 * 178.55094 * 27 14 13 49 49 H 1.09002 * 109.50788 * 183.21077 * 28 27 14 50 50 H 1.09000 * 109.50879 * 63.08596 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9398 1.5002 -1.4417 7 6 3.8341 2.7264 0.7110 8 8 2.9855 3.5048 1.0916 9 7 5.1379 2.9939 0.9236 10 6 5.5300 4.2252 1.6138 11 6 7.0548 4.2842 1.7249 12 1 7.4931 4.2737 0.7268 13 6 7.4652 5.5681 2.4508 14 7 8.9252 5.5823 2.6229 15 6 9.3674 6.8266 3.2664 16 6 10.8703 6.9174 3.2051 17 8 11.5027 6.0927 2.5795 18 7 11.5120 7.9148 3.8453 19 6 12.8794 7.9970 3.7900 20 1 13.4424 7.2626 3.2329 21 6 13.5409 9.0250 4.4504 22 7 14.8515 9.1041 4.3969 23 14 12.5672 10.2946 5.4144 24 1 12.4041 9.8333 6.8165 25 1 13.2931 11.5899 5.4009 26 1 11.2302 10.4699 4.7923 27 6 9.3713 4.4073 3.3855 28 6 8.9418 3.1352 2.6502 29 8 7.5239 3.1536 2.4644 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.5076 2.3587 -1.9558 36 1 5.0265 1.5859 -1.4412 37 1 3.6482 0.5843 -1.9556 38 1 5.8166 2.3715 0.6188 39 1 5.1728 5.0871 1.0503 40 1 5.0926 4.2371 2.6121 41 1 7.1597 6.4328 1.8618 42 1 6.9832 5.6037 3.4279 43 1 8.9304 7.6795 2.7470 44 1 9.0453 6.8314 4.3077 45 1 11.0064 8.5740 4.3459 46 1 15.3133 9.8219 4.8577 47 1 8.9198 4.4243 4.3775 48 1 10.4572 4.4248 3.4788 49 1 9.2203 2.2620 3.2402 50 1 9.4355 3.0916 1.6794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482182142.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:17 Heat of formation + Delta-G solvation = -149.866004 kcal Electronic energy + Delta-G solvation = -30008.349893 eV Core-core repulsion = 25650.318472 eV Total energy + Delta-G solvation = -4358.031420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.41274 -39.75279 -38.37009 -38.00125 -35.59929 -34.97224 -33.92443 -33.03946 -31.72869 -31.65390 -30.40457 -29.23381 -27.18433 -25.37352 -24.46089 -23.78130 -23.13548 -22.38462 -20.93175 -20.23885 -19.41430 -18.36553 -17.77077 -17.45909 -16.78268 -16.28693 -16.16903 -16.05582 -15.67067 -15.42689 -15.19979 -15.00010 -14.76516 -14.39702 -13.96380 -13.89719 -13.74309 -13.65280 -13.49973 -13.17354 -13.07858 -12.74640 -12.67035 -12.53528 -12.40674 -12.27739 -12.01150 -11.84286 -11.79514 -11.49927 -11.37110 -11.33084 -11.06322 -10.65593 -10.60686 -10.33015 -10.02375 -9.85753 -9.72721 -9.58023 -9.35999 -8.64289 -8.23549 -8.11755 -6.35386 -3.87078 2.34146 2.47356 2.99542 3.03703 3.12418 3.41170 3.55694 3.67660 3.74433 4.06521 4.28695 4.44604 4.52527 4.60791 4.65684 4.68212 4.75253 4.78800 4.91249 4.92524 5.01395 5.05992 5.15656 5.21481 5.24430 5.29434 5.30954 5.43921 5.44684 5.47734 5.52477 5.60349 5.63176 5.69230 5.72206 5.74636 5.86289 5.99625 6.06772 6.14626 6.65238 6.95735 6.96092 7.13186 7.20786 7.53512 7.94212 8.09330 8.55347 8.90443 9.37683 9.77759 10.77566 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.034501 B = 0.001657 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.380393 B =16889.800012 C =17275.634812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.072 3.928 5 H 0.087 0.913 6 C -0.171 4.171 7 C 0.514 3.486 8 O -0.521 6.521 9 N -0.720 5.720 10 C 0.131 3.869 11 C 0.084 3.916 12 H 0.077 0.923 13 C 0.026 3.974 14 N -0.512 5.512 15 C 0.043 3.957 16 C 0.451 3.549 17 O -0.560 6.560 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.043 3.957 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.015 3.985 28 C 0.069 3.931 29 O -0.385 6.385 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.405 0.595 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.370 0.630 46 H 0.274 0.726 47 H 0.035 0.965 48 H 0.110 0.890 49 H 0.098 0.902 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.963 -16.200 -7.162 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.010 3.990 5 H 0.105 0.895 6 C -0.228 4.228 7 C 0.299 3.701 8 O -0.396 6.396 9 N -0.374 5.374 10 C 0.007 3.993 11 C 0.026 3.974 12 H 0.094 0.906 13 C -0.103 4.103 14 N -0.237 5.237 15 C -0.088 4.088 16 C 0.237 3.763 17 O -0.442 6.442 18 N -0.229 5.229 19 C -0.435 4.435 20 H 0.138 0.862 21 C -0.160 4.160 22 N -0.520 5.520 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.113 4.113 28 C -0.008 4.008 29 O -0.304 6.304 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.240 0.760 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.068 0.932 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.128 0.872 49 H 0.116 0.884 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.983 -16.075 -7.635 29.865 hybrid contribution -0.161 0.960 1.466 1.760 sum -24.145 -15.115 -6.168 29.146 Atomic orbital electron populations 1.21731 0.93360 1.02266 1.03469 1.22603 0.96032 0.83454 1.00139 1.88060 1.18281 1.26400 1.94938 1.21854 0.83878 0.96459 0.96775 0.89543 1.22237 1.01766 1.03878 0.94954 1.20365 0.82476 0.87731 0.79576 1.90732 1.50140 1.48760 1.49981 1.45756 1.07138 1.24320 1.60162 1.21361 0.92346 0.87239 0.98311 1.22317 0.92896 0.86281 0.95934 0.90560 1.22677 0.89096 0.98340 1.00220 1.61762 1.09607 1.01858 1.50432 1.21915 0.96102 0.92912 0.97859 1.19589 0.88083 0.84312 0.84325 1.90539 1.67584 1.41527 1.44536 1.42220 1.07890 1.25789 1.47005 1.19421 0.79623 1.13055 1.31357 0.86245 1.25031 0.95560 0.97676 0.97775 1.69617 1.06699 1.32978 1.42698 0.86682 0.79930 0.82008 0.80831 1.19647 1.20119 1.19484 1.22922 1.03942 0.90003 0.94401 1.22681 0.80078 0.97397 1.00633 1.87936 1.23106 1.43940 1.75416 0.91624 0.91723 0.90976 0.93147 0.93181 0.90973 0.90778 0.91163 0.76019 0.89666 0.90573 0.89360 0.93767 0.88888 0.93250 0.79704 0.91568 0.94705 0.87184 0.88396 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.50 16 2 C 0.05 0.36 6.47 37.16 0.24 0.60 16 3 O -0.36 -3.63 9.53 -55.09 -0.52 -4.15 16 4 C 0.07 0.58 3.13 -27.89 -0.09 0.49 16 5 H 0.09 0.49 7.79 -51.93 -0.40 0.09 16 6 C -0.17 -0.99 9.48 37.15 0.35 -0.64 16 7 C 0.51 5.57 7.18 -10.99 -0.08 5.49 16 8 O -0.52 -8.02 16.51 -14.30 -0.24 -8.25 16 9 N -0.72 -6.33 5.41 -60.30 -0.33 -6.65 16 10 C 0.13 1.26 5.37 -4.04 -0.02 1.24 16 11 C 0.08 0.87 2.89 -26.68 -0.08 0.79 16 12 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 13 C 0.03 0.30 4.93 -3.71 -0.02 0.28 16 14 N -0.51 -7.73 4.42 -235.75 -1.04 -8.77 16 15 C 0.04 0.70 5.45 -4.98 -0.03 0.67 16 16 C 0.45 9.88 7.35 -10.99 -0.08 9.80 16 17 O -0.56 -14.35 14.25 5.54 0.08 -14.27 16 18 N -0.59 -13.68 5.09 -10.96 -0.06 -13.73 16 19 C -0.31 -8.47 10.16 -14.94 -0.15 -8.62 16 20 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 22 N -0.88 -25.34 13.96 55.50 0.77 -24.56 16 23 Si 0.88 19.07 27.74 -169.99 -4.71 14.35 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 27 C 0.02 0.22 5.30 -3.71 -0.02 0.20 16 28 C 0.07 0.82 7.01 37.20 0.26 1.08 16 29 O -0.38 -4.40 10.22 -35.23 -0.36 -4.76 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.25 7.87 -51.93 -0.41 -0.16 16 34 H 0.05 0.29 8.08 -51.93 -0.42 -0.13 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 37 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 38 H 0.41 2.71 8.13 -40.82 -0.33 2.38 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 1.31 8.04 -51.93 -0.42 0.89 16 44 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16 46 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.11 1.97 6.10 -51.93 -0.32 1.65 16 49 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 407.38 15.07 6.14 6.14 Total: -1.00 -35.49 407.38 -8.09 -43.59 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.40 Total: 9.14 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 0.58 Total: 11.94 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.65 Total: -53.72 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.04 Total: -31.43 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.49 -8.09 -43.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482182142.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.281 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds