Wall clock time and date at job start Wed Apr 1 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42909 * 109.46732 * 2 1 4 4 C 1.42904 * 113.99723 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47316 * 29.99941 * 4 3 2 6 6 C 1.53003 * 109.46997 * 270.00090 * 4 3 2 7 7 C 1.50701 * 109.46981 * 150.00394 * 4 3 2 8 8 O 1.21280 * 119.99781 * 4.99580 * 7 4 3 9 9 N 1.34771 * 119.99622 * 185.00256 * 7 4 3 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 4 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.50871 * 304.99952 * 11 10 9 13 13 C 1.53100 * 109.51099 * 184.91436 * 11 10 9 14 14 N 1.47015 * 109.25926 * 183.21808 * 13 11 10 15 15 C 1.46901 * 110.99639 * 182.39087 * 14 13 11 16 16 C 1.50701 * 109.46952 * 169.99929 * 15 14 13 17 17 O 1.21293 * 119.99817 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99835 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99683 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00216 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99875 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99939 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99681 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.46909 * 90.00743 * 23 21 19 25 25 H 1.48504 * 109.47081 * 209.99913 * 23 21 19 26 26 H 1.48493 * 109.47580 * 330.00286 * 23 21 19 27 27 C 1.47016 * 110.75408 * 58.61534 * 14 13 11 28 28 C 1.53100 * 109.25377 * 301.38147 * 27 14 13 29 29 O 1.43019 * 109.50523 * 65.08454 * 11 10 9 30 30 H 1.09003 * 109.46646 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47471 * 299.99549 * 1 2 3 32 32 H 1.08999 * 109.46770 * 60.00125 * 1 2 3 33 33 H 1.08998 * 109.47138 * 240.00708 * 2 1 3 34 34 H 1.08997 * 109.47253 * 119.99711 * 2 1 3 35 35 H 1.08993 * 109.47618 * 300.00068 * 6 4 3 36 36 H 1.09004 * 109.47134 * 60.00200 * 6 4 3 37 37 H 1.08998 * 109.46717 * 179.97438 * 6 4 3 38 38 H 0.96996 * 120.00772 * 359.97438 * 9 7 4 39 39 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 40 40 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 41 41 H 1.09008 * 109.49936 * 303.15229 * 13 11 10 42 42 H 1.08998 * 109.50408 * 63.23220 * 13 11 10 43 43 H 1.09001 * 109.46948 * 289.99892 * 15 14 13 44 44 H 1.09000 * 109.47437 * 49.99665 * 15 14 13 45 45 H 0.96994 * 120.00259 * 359.97438 * 18 16 15 46 46 H 0.96999 * 119.99836 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.50635 * 61.31531 * 27 14 13 48 48 H 1.08992 * 109.50355 * 181.40606 * 27 14 13 49 49 H 1.09006 * 109.50456 * 176.78434 * 28 27 14 50 50 H 1.08999 * 109.51076 * 296.86791 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.8636 0.6017 -0.5129 6 6 3.9386 1.5007 1.4433 7 6 3.8347 2.7265 -0.7098 8 8 2.9863 3.5048 -1.0912 9 7 5.1386 2.9939 -0.9212 10 6 5.5311 4.2246 -1.6123 11 6 7.0561 4.2844 -1.7209 12 1 7.4959 4.1843 -0.7285 13 6 7.4731 5.6247 -2.3320 14 7 8.9329 5.6455 -2.5052 15 6 9.3814 6.9390 -3.0377 16 6 10.8850 7.0153 -2.9717 17 8 11.5204 6.0839 -2.5246 18 7 11.5237 8.1184 -3.4096 19 6 12.8916 8.1875 -3.3500 20 1 13.4574 7.3582 -2.9518 21 6 13.5501 9.3250 -3.8009 22 7 14.8612 9.3915 -3.7434 23 14 12.5714 10.7596 -4.4889 24 1 12.2277 11.6969 -3.3895 25 1 13.3845 11.4698 -5.5086 26 1 11.3241 10.2529 -5.1155 27 6 9.3708 4.5396 -3.3692 28 6 8.9348 3.2101 -2.7475 29 8 7.5173 3.2198 -2.5571 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5060 2.3592 1.9569 36 1 3.6465 0.5848 1.9572 37 1 5.0252 1.5864 1.4437 38 1 5.8171 2.3717 -0.6160 39 1 5.0947 4.2355 -2.6111 40 1 5.1732 5.0871 -1.0500 41 1 6.9897 5.7488 -3.3012 42 1 7.1729 6.4361 -1.6690 43 1 9.0577 7.0372 -4.0739 44 1 8.9503 7.7454 -2.4445 45 1 11.0156 8.8630 -3.7675 46 1 15.3208 10.1857 -4.0578 47 1 8.9178 4.6464 -4.3548 48 1 10.4564 4.5594 -3.4634 49 1 9.2071 2.3906 -3.4127 50 1 9.4304 3.0781 -1.7857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482182143.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:20 Heat of formation + Delta-G solvation = -149.558879 kcal Electronic energy + Delta-G solvation = -29996.582988 eV Core-core repulsion = 25638.564885 eV Total energy + Delta-G solvation = -4358.018102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.41115 -39.74982 -38.37395 -38.00305 -35.59022 -34.98326 -33.92906 -33.03826 -31.73923 -31.64128 -30.40404 -29.22560 -27.17460 -25.37287 -24.46746 -23.75936 -23.13679 -22.38751 -20.95700 -20.21463 -19.42839 -18.36504 -17.76913 -17.46226 -16.77790 -16.28755 -16.17241 -16.04237 -15.66693 -15.40726 -15.18247 -15.02162 -14.76680 -14.39846 -13.97419 -13.90286 -13.75890 -13.60724 -13.51072 -13.17681 -13.07719 -12.74586 -12.67306 -12.53989 -12.40796 -12.28202 -11.98382 -11.83998 -11.79706 -11.50017 -11.36898 -11.32994 -11.05994 -10.63462 -10.60898 -10.33296 -10.02557 -9.86122 -9.72289 -9.58199 -9.36869 -8.64320 -8.23672 -8.09948 -6.35560 -3.87219 2.33842 2.47219 2.99312 3.03889 3.12403 3.42496 3.55306 3.66493 3.75803 4.06450 4.28051 4.44226 4.52224 4.60972 4.65556 4.68073 4.76587 4.78716 4.91141 4.92540 5.01251 5.07706 5.16283 5.21383 5.25274 5.29762 5.30925 5.44060 5.45053 5.47677 5.53480 5.61724 5.63091 5.68650 5.72164 5.75166 5.85696 6.00723 6.07665 6.18795 6.64969 6.96914 6.97634 7.14774 7.20003 7.53270 7.93680 8.09257 8.54989 8.90185 9.37464 9.77271 10.77388 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.001658 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.128391 B =16879.891792 C =17260.176919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.072 3.928 5 H 0.087 0.913 6 C -0.171 4.171 7 C 0.514 3.486 8 O -0.521 6.521 9 N -0.721 5.721 10 C 0.131 3.869 11 C 0.084 3.916 12 H 0.076 0.924 13 C 0.025 3.975 14 N -0.512 5.512 15 C 0.043 3.957 16 C 0.452 3.548 17 O -0.561 6.561 18 N -0.589 5.589 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.043 3.957 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.270 1.270 27 C 0.013 3.987 28 C 0.068 3.932 29 O -0.385 6.385 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.404 0.596 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.370 0.630 46 H 0.274 0.726 47 H 0.034 0.966 48 H 0.115 0.885 49 H 0.098 0.902 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.958 -16.373 6.282 29.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.010 3.990 5 H 0.105 0.895 6 C -0.228 4.228 7 C 0.299 3.701 8 O -0.396 6.396 9 N -0.375 5.375 10 C 0.007 3.993 11 C 0.026 3.974 12 H 0.094 0.906 13 C -0.104 4.104 14 N -0.237 5.237 15 C -0.088 4.088 16 C 0.238 3.762 17 O -0.443 6.443 18 N -0.228 5.228 19 C -0.435 4.435 20 H 0.138 0.862 21 C -0.160 4.160 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.115 4.115 28 C -0.008 4.008 29 O -0.304 6.304 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.239 0.761 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.052 0.948 48 H 0.133 0.867 49 H 0.116 0.884 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.978 -16.343 6.636 29.768 hybrid contribution -0.173 1.145 -1.206 1.672 sum -24.152 -15.198 5.430 29.048 Atomic orbital electron populations 1.21730 0.93358 1.02267 1.03472 1.22606 0.96036 0.83449 1.00139 1.88063 1.18273 1.26401 1.94940 1.21860 0.83890 0.96452 0.96775 0.89544 1.22239 1.01768 1.03887 0.94946 1.20362 0.82466 0.87729 0.79573 1.90732 1.50150 1.48759 1.49928 1.45782 1.07143 1.24368 1.60165 1.21353 0.92406 0.87194 0.98334 1.22305 0.92930 0.87275 0.94900 0.90600 1.22679 0.89146 0.97804 1.00736 1.61771 1.09609 1.02648 1.49674 1.21908 0.96037 0.91952 0.98925 1.19580 0.88108 0.84306 0.84229 1.90516 1.67465 1.37422 1.48921 1.42210 1.07861 1.15772 1.56983 1.19424 0.79614 1.04502 1.39930 0.86239 1.25034 0.95564 0.97781 0.97662 1.69616 1.06748 1.29389 1.46215 0.86680 0.79948 0.83075 0.79723 1.19559 1.20146 1.19544 1.22983 1.04385 0.90620 0.93484 1.22685 0.80061 0.97003 1.01059 1.87952 1.23225 1.49465 1.69761 0.90975 0.91716 0.91628 0.93179 0.93141 0.90966 0.91159 0.90782 0.76092 0.90481 0.89656 0.93778 0.89384 0.93120 0.88986 0.79684 0.91564 0.94816 0.86696 0.88430 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.50 16 2 C 0.05 0.36 6.47 37.16 0.24 0.60 16 3 O -0.36 -3.62 9.53 -55.09 -0.52 -4.15 16 4 C 0.07 0.57 3.13 -27.88 -0.09 0.49 16 5 H 0.09 0.49 7.79 -51.93 -0.40 0.09 16 6 C -0.17 -0.99 9.48 37.16 0.35 -0.64 16 7 C 0.51 5.57 7.18 -10.99 -0.08 5.49 16 8 O -0.52 -8.01 16.51 -14.30 -0.24 -8.25 16 9 N -0.72 -6.31 5.47 -60.29 -0.33 -6.64 16 10 C 0.13 1.26 5.34 -4.04 -0.02 1.24 16 11 C 0.08 0.87 2.84 -26.68 -0.08 0.80 16 12 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 13 C 0.03 0.29 4.93 -3.71 -0.02 0.28 16 14 N -0.51 -7.75 4.46 -235.75 -1.05 -8.80 16 15 C 0.04 0.69 5.45 -4.98 -0.03 0.67 16 16 C 0.45 9.88 7.49 -10.99 -0.08 9.80 16 17 O -0.56 -14.30 13.93 5.55 0.08 -14.22 16 18 N -0.59 -13.65 5.09 -10.96 -0.06 -13.71 16 19 C -0.31 -8.46 10.16 -14.93 -0.15 -8.62 16 20 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 22 N -0.88 -25.31 13.96 55.50 0.77 -24.54 16 23 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 27 C 0.01 0.19 5.29 -3.71 -0.02 0.17 16 28 C 0.07 0.83 7.01 37.21 0.26 1.09 16 29 O -0.38 -4.48 10.42 -35.23 -0.37 -4.84 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.28 8.09 -51.93 -0.42 -0.14 16 34 H 0.05 0.25 7.87 -51.93 -0.41 -0.16 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 37 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 38 H 0.40 2.67 8.26 -40.82 -0.34 2.33 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 43 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 44 H 0.09 1.28 8.04 -51.93 -0.42 0.86 16 45 H 0.37 7.55 5.76 -40.82 -0.24 7.32 16 46 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.12 2.08 5.88 -51.93 -0.31 1.77 16 49 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -35.42 407.30 -8.11 -43.53 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -8.40 Total: 9.22 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 0.58 Total: 11.92 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.66 Total: -53.69 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.05 Total: -31.46 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.42 -8.11 -43.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482182143.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.027 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds