Wall clock time and date at job start Wed Apr 1 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42909 * 109.46732 * 2 1 4 4 C 1.42904 * 113.99723 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47316 * 29.99941 * 4 3 2 6 6 C 1.53003 * 109.46997 * 270.00090 * 4 3 2 7 7 C 1.50701 * 109.46981 * 150.00394 * 4 3 2 8 8 O 1.21280 * 119.99781 * 4.99580 * 7 4 3 9 9 N 1.34771 * 119.99622 * 185.00256 * 7 4 3 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 4 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.50871 * 304.99952 * 11 10 9 13 13 C 1.53100 * 109.51099 * 184.91436 * 11 10 9 14 14 N 1.47015 * 109.25926 * 183.21808 * 13 11 10 15 15 C 1.46901 * 110.99639 * 182.39087 * 14 13 11 16 16 C 1.50701 * 109.46952 * 169.99929 * 15 14 13 17 17 O 1.21293 * 119.99817 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99835 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99683 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00216 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99875 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99939 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99681 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.46909 * 90.00743 * 23 21 19 25 25 H 1.48504 * 109.47081 * 209.99913 * 23 21 19 26 26 H 1.48493 * 109.47580 * 330.00286 * 23 21 19 27 27 C 1.47016 * 110.75408 * 58.61534 * 14 13 11 28 28 C 1.53100 * 109.25377 * 301.38147 * 27 14 13 29 29 O 1.43019 * 109.50523 * 65.08454 * 11 10 9 30 30 H 1.09003 * 109.46646 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47471 * 299.99549 * 1 2 3 32 32 H 1.08999 * 109.46770 * 60.00125 * 1 2 3 33 33 H 1.08998 * 109.47138 * 240.00708 * 2 1 3 34 34 H 1.08997 * 109.47253 * 119.99711 * 2 1 3 35 35 H 1.08993 * 109.47618 * 300.00068 * 6 4 3 36 36 H 1.09004 * 109.47134 * 60.00200 * 6 4 3 37 37 H 1.08998 * 109.46717 * 179.97438 * 6 4 3 38 38 H 0.96996 * 120.00772 * 359.97438 * 9 7 4 39 39 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 40 40 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 41 41 H 1.09008 * 109.49936 * 303.15229 * 13 11 10 42 42 H 1.08998 * 109.50408 * 63.23220 * 13 11 10 43 43 H 1.09001 * 109.46948 * 289.99892 * 15 14 13 44 44 H 1.09000 * 109.47437 * 49.99665 * 15 14 13 45 45 H 0.96994 * 120.00259 * 359.97438 * 18 16 15 46 46 H 0.96999 * 119.99836 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.50635 * 61.31531 * 27 14 13 48 48 H 1.08992 * 109.50355 * 181.40606 * 27 14 13 49 49 H 1.09006 * 109.50456 * 176.78434 * 28 27 14 50 50 H 1.08999 * 109.51076 * 296.86791 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.8636 0.6017 -0.5129 6 6 3.9386 1.5007 1.4433 7 6 3.8347 2.7265 -0.7098 8 8 2.9863 3.5048 -1.0912 9 7 5.1386 2.9939 -0.9212 10 6 5.5311 4.2246 -1.6123 11 6 7.0561 4.2844 -1.7209 12 1 7.4959 4.1843 -0.7285 13 6 7.4731 5.6247 -2.3320 14 7 8.9329 5.6455 -2.5052 15 6 9.3814 6.9390 -3.0377 16 6 10.8850 7.0153 -2.9717 17 8 11.5204 6.0839 -2.5246 18 7 11.5237 8.1184 -3.4096 19 6 12.8916 8.1875 -3.3500 20 1 13.4574 7.3582 -2.9518 21 6 13.5501 9.3250 -3.8009 22 7 14.8612 9.3915 -3.7434 23 14 12.5714 10.7596 -4.4889 24 1 12.2277 11.6969 -3.3895 25 1 13.3845 11.4698 -5.5086 26 1 11.3241 10.2529 -5.1155 27 6 9.3708 4.5396 -3.3692 28 6 8.9348 3.2101 -2.7475 29 8 7.5173 3.2198 -2.5571 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5060 2.3592 1.9569 36 1 3.6465 0.5848 1.9572 37 1 5.0252 1.5864 1.4437 38 1 5.8171 2.3717 -0.6160 39 1 5.0947 4.2355 -2.6111 40 1 5.1732 5.0871 -1.0500 41 1 6.9897 5.7488 -3.3012 42 1 7.1729 6.4361 -1.6690 43 1 9.0577 7.0372 -4.0739 44 1 8.9503 7.7454 -2.4445 45 1 11.0156 8.8630 -3.7675 46 1 15.3208 10.1857 -4.0578 47 1 8.9178 4.6464 -4.3548 48 1 10.4564 4.5594 -3.4634 49 1 9.2071 2.3906 -3.4127 50 1 9.4304 3.0781 -1.7857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482182143.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:19 Heat of formation + Delta-G solvation = -179.124968 kcal Electronic energy + Delta-G solvation = -29997.865069 eV Core-core repulsion = 25638.564885 eV Total energy + Delta-G solvation = -4359.300184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.28900 -40.81585 -39.87297 -38.73748 -36.79508 -35.93565 -35.77772 -33.75790 -33.64779 -32.43080 -30.97857 -30.47090 -28.26476 -26.76824 -25.30339 -25.02302 -23.72029 -23.28917 -21.83046 -21.26998 -21.10851 -20.21411 -18.52238 -18.13560 -17.91072 -17.49416 -17.09195 -16.89120 -16.77627 -16.57093 -16.42747 -16.13804 -15.72743 -15.54740 -15.34628 -15.04580 -14.87011 -14.70810 -14.34507 -14.23932 -14.19608 -13.89688 -13.64635 -13.37473 -13.27024 -13.19510 -13.02580 -12.89443 -12.86475 -12.42720 -12.35081 -12.28786 -12.24555 -12.02628 -11.98160 -11.61607 -11.44816 -11.02072 -10.82238 -10.49253 -10.29265 -10.22540 -10.16981 -9.33531 -8.41269 -6.01808 1.30135 1.35186 1.43862 1.54083 1.78737 1.94821 2.22583 2.49620 2.64399 2.93760 3.12559 3.17712 3.63831 3.77018 3.88959 3.94213 3.96399 4.02205 4.09461 4.16348 4.20552 4.23372 4.33333 4.36739 4.42871 4.49456 4.49857 4.57074 4.61344 4.62835 4.65447 4.79582 4.88903 4.89978 4.94746 5.02439 5.02944 5.20744 5.27346 5.32616 5.52226 5.80065 5.94052 6.00453 6.11320 6.14977 6.51415 6.59463 6.88407 7.17912 7.39828 7.96253 8.76188 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.001658 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.128391 B =16879.891792 C =17260.176919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.393 6.393 4 C 0.071 3.929 5 H 0.113 0.887 6 C -0.165 4.165 7 C 0.510 3.490 8 O -0.574 6.574 9 N -0.708 5.708 10 C 0.137 3.863 11 C 0.090 3.910 12 H 0.081 0.919 13 C 0.026 3.974 14 N -0.531 5.531 15 C 0.053 3.947 16 C 0.452 3.548 17 O -0.603 6.603 18 N -0.592 5.592 19 C -0.327 4.327 20 H 0.057 0.943 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.962 3.038 24 H -0.257 1.257 25 H -0.276 1.276 26 H -0.233 1.233 27 C 0.014 3.986 28 C 0.077 3.923 29 O -0.385 6.385 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.417 0.583 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.124 0.876 45 H 0.389 0.611 46 H 0.279 0.721 47 H 0.039 0.961 48 H 0.075 0.925 49 H 0.115 0.885 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.732 -16.284 6.205 31.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.312 6.312 4 C 0.010 3.990 5 H 0.131 0.869 6 C -0.223 4.223 7 C 0.297 3.703 8 O -0.453 6.453 9 N -0.362 5.362 10 C 0.013 3.987 11 C 0.032 3.968 12 H 0.099 0.901 13 C -0.102 4.102 14 N -0.256 5.256 15 C -0.077 4.077 16 C 0.240 3.760 17 O -0.487 6.487 18 N -0.234 5.234 19 C -0.456 4.456 20 H 0.075 0.925 21 C -0.212 4.212 22 N -0.575 5.575 23 Si 0.783 3.217 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.156 1.156 27 C -0.114 4.114 28 C 0.000 4.000 29 O -0.305 6.305 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.254 0.746 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.126 0.874 43 H 0.094 0.906 44 H 0.142 0.858 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.057 0.943 48 H 0.094 0.906 49 H 0.133 0.867 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.757 -16.296 6.575 32.012 hybrid contribution 0.733 0.964 -1.121 1.650 sum -26.025 -15.332 5.454 30.693 Atomic orbital electron populations 1.21770 0.93292 1.03416 1.02401 1.22821 0.96228 0.82289 1.01514 1.88029 1.19478 1.28537 1.95184 1.22008 0.83419 0.95605 0.97937 0.86915 1.22229 1.02720 1.04009 0.93315 1.20977 0.82324 0.88173 0.78851 1.90704 1.51584 1.50679 1.52329 1.45704 1.07015 1.24255 1.59243 1.21252 0.91636 0.87859 0.98002 1.22310 0.93185 0.86511 0.94828 0.90065 1.22787 0.86595 0.99125 1.01738 1.61724 1.12059 1.02075 1.49787 1.21848 0.90941 0.93703 1.01258 1.20792 0.90766 0.82810 0.81624 1.90508 1.69358 1.38853 1.50026 1.42041 1.06156 1.17117 1.58056 1.19000 0.81769 1.03535 1.41285 0.92458 1.26065 0.96693 1.01072 0.97341 1.69797 1.09272 1.30839 1.47550 0.85399 0.79310 0.77912 0.79114 1.18175 1.20161 1.15604 1.22878 1.02018 0.92249 0.94282 1.22607 0.80341 0.96069 1.00973 1.87960 1.22607 1.49864 1.70021 0.88707 0.92330 0.93142 0.92302 0.91113 0.92671 0.89452 0.88954 0.74606 0.91595 0.89005 0.93030 0.87363 0.90630 0.85772 0.77582 0.91187 0.94260 0.90621 0.86672 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.05 0.54 6.47 71.98 0.47 1.01 16 3 O -0.39 -7.59 9.53 -129.99 -1.24 -8.83 16 4 C 0.07 1.01 3.13 29.85 0.09 1.11 16 5 H 0.11 0.96 7.79 -2.39 -0.02 0.94 16 6 C -0.17 -1.54 9.48 71.98 0.68 -0.86 16 7 C 0.51 10.47 7.18 87.66 0.63 11.10 16 8 O -0.57 -17.65 16.51 15.96 0.26 -17.38 16 9 N -0.71 -11.00 5.47 -463.06 -2.53 -13.53 16 10 C 0.14 2.34 5.34 86.38 0.46 2.80 16 11 C 0.09 1.63 2.84 30.63 0.09 1.72 16 12 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 13 C 0.03 0.51 4.93 86.31 0.43 0.94 16 14 N -0.53 -15.00 4.46 -899.77 -4.01 -19.01 16 15 C 0.05 1.58 5.45 85.56 0.47 2.04 16 16 C 0.45 19.70 7.49 87.66 0.66 20.36 16 17 O -0.60 -31.92 13.93 -3.07 -0.04 -31.97 16 18 N -0.59 -27.22 5.09 -306.98 -1.56 -28.79 16 19 C -0.33 -18.78 10.16 84.04 0.85 -17.93 16 20 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.93 -55.70 13.96 21.66 0.30 -55.40 16 23 Si 0.96 38.28 27.74 68.60 1.90 40.18 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.23 -7.78 6.52 99.48 0.65 -7.14 16 27 C 0.01 0.40 5.29 86.31 0.46 0.86 16 28 C 0.08 1.76 7.01 72.02 0.50 2.26 16 29 O -0.39 -8.06 10.42 -148.98 -1.55 -9.62 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.55 8.09 -2.39 -0.02 0.53 16 34 H 0.07 0.51 7.87 -2.39 -0.02 0.49 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.53 7.87 -2.38 -0.02 0.51 16 37 H 0.09 0.50 7.92 -2.39 -0.02 0.48 16 38 H 0.42 4.38 8.26 -92.71 -0.77 3.61 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.11 1.76 8.09 -2.39 -0.02 1.74 16 43 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 44 H 0.12 2.92 8.04 -2.39 -0.02 2.90 16 45 H 0.39 14.82 5.76 -92.71 -0.53 14.28 16 46 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 47 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 2.82 5.88 -2.39 -0.01 2.81 16 49 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 50 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -83.74 407.30 -1.89 -85.63 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.41 Total: 34.43 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 6.99 Total: 24.28 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -7.80 Total: -116.73 kcal Atomic # 8 Polarization: -65.22 SS G_CDS: -2.57 Total: -67.79 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.90 Total: 40.18 kcal Total: -83.74 -1.89 -85.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482182143.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.494 kcal (2) G-P(sol) polarization free energy of solvation -83.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds