Wall clock time and date at job start Wed Apr 1 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47442 * 2 1 4 4 C 1.42891 * 114.00318 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47282 * 330.00154 * 4 3 2 6 6 C 1.53002 * 109.47389 * 90.00292 * 4 3 2 7 7 C 1.50697 * 109.47446 * 210.00168 * 4 3 2 8 8 O 1.21284 * 120.00155 * 354.99880 * 7 4 3 9 9 N 1.34780 * 120.00366 * 174.99913 * 7 4 3 10 10 C 1.46492 * 120.00248 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.47294 * 184.98612 * 10 9 7 12 12 H 1.09001 * 109.50544 * 185.85275 * 11 10 9 13 13 C 1.53090 * 109.54319 * 65.73796 * 11 10 9 14 14 O 1.43016 * 109.26360 * 183.19653 * 13 11 10 15 15 C 1.43016 * 113.73721 * 58.66914 * 14 13 11 16 16 C 1.53107 * 109.26045 * 301.33430 * 15 14 13 17 17 N 1.47012 * 109.25547 * 56.84517 * 16 15 14 18 18 C 1.46895 * 110.99883 * 177.60969 * 17 16 15 19 19 C 1.50700 * 109.47116 * 287.57235 * 18 17 16 20 20 O 1.21295 * 120.00344 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00178 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00128 * 179.72835 * 21 19 18 23 23 H 1.07997 * 119.99860 * 0.26429 * 22 21 19 24 24 C 1.38954 * 120.00072 * 180.27164 * 22 21 19 25 25 N 1.31408 * 119.99592 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00100 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46785 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.46914 * 119.99999 * 26 24 22 29 29 H 1.48499 * 109.46935 * 240.00025 * 26 24 22 30 30 H 1.09005 * 109.47431 * 59.99428 * 1 2 3 31 31 H 1.08993 * 109.47647 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46931 * 300.00167 * 1 2 3 33 33 H 1.09007 * 109.46919 * 240.00383 * 2 1 3 34 34 H 1.08992 * 109.47208 * 120.00617 * 2 1 3 35 35 H 1.09008 * 109.46853 * 300.00257 * 6 4 3 36 36 H 1.09000 * 109.47514 * 59.99619 * 6 4 3 37 37 H 1.09001 * 109.47408 * 180.02562 * 6 4 3 38 38 H 0.97007 * 119.99752 * 359.97438 * 9 7 4 39 39 H 1.09008 * 109.47222 * 64.98578 * 10 9 7 40 40 H 1.08999 * 109.47240 * 304.98705 * 10 9 7 41 41 H 1.08997 * 109.50677 * 303.13258 * 13 11 10 42 42 H 1.09003 * 109.51020 * 63.26465 * 13 11 10 43 43 H 1.08994 * 109.50832 * 61.26609 * 15 14 13 44 44 H 1.08999 * 109.50786 * 181.35865 * 15 14 13 45 45 H 1.09002 * 109.50595 * 296.91512 * 16 15 14 46 46 H 1.08990 * 109.50784 * 176.78075 * 16 15 14 47 47 H 1.09009 * 109.47199 * 167.57287 * 18 17 16 48 48 H 1.08995 * 109.47672 * 47.57359 * 18 17 16 49 49 H 0.97003 * 119.99732 * 359.97438 * 21 19 18 50 50 H 0.97008 * 119.99327 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8636 0.6014 0.5129 6 6 3.9387 1.5006 -1.4433 7 6 3.8348 2.7262 0.7098 8 8 2.9866 3.5046 1.0913 9 7 5.1388 2.9936 0.9213 10 6 5.5315 4.2247 1.6115 11 6 7.0568 4.3452 1.6112 12 1 7.3541 5.2043 2.2127 13 6 7.5557 4.5289 0.1756 14 8 8.9854 4.5660 0.1742 15 6 9.5924 3.3906 0.7175 16 6 9.1141 3.1953 2.1588 17 7 7.6459 3.1226 2.1767 18 6 7.1475 2.8784 3.5367 19 6 7.4435 1.4547 3.9321 20 8 8.0133 0.7159 3.1570 21 7 7.0743 1.0019 5.1467 22 6 7.3387 -0.2950 5.5043 23 1 7.8466 -0.9525 4.8144 24 6 6.9530 -0.7634 6.7544 25 7 6.3354 0.0368 7.5939 26 14 7.3126 -2.5306 7.2413 27 1 8.0117 -3.2187 6.1264 28 1 8.1743 -2.5452 8.4507 29 1 6.0372 -3.2327 7.5337 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.6465 0.5848 -1.9572 36 1 3.5060 2.3592 -1.9569 37 1 5.0254 1.5862 -1.4437 38 1 5.8173 2.3709 0.6166 39 1 5.1694 4.1964 2.6393 40 1 5.0991 5.0831 1.0974 41 1 7.2127 3.6961 -0.4382 42 1 7.1670 5.4638 -0.2281 43 1 9.3087 2.5247 0.1195 44 1 10.6767 3.5020 0.7052 45 1 9.4443 4.0361 2.7689 46 1 9.5292 2.2700 2.5578 47 1 6.0708 3.0470 3.5649 48 1 7.6399 3.5584 4.2318 49 1 6.6184 1.5926 5.7665 50 1 6.0665 -0.2901 8.4668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484586355.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:27 Heat of formation + Delta-G solvation = -152.433272 kcal Electronic energy + Delta-G solvation = -31859.916701 eV Core-core repulsion = 27501.773956 eV Total energy + Delta-G solvation = -4358.142745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.38044 -39.51715 -38.04517 -37.74836 -35.92915 -34.45508 -33.78966 -32.67782 -31.34549 -31.27792 -30.08522 -29.06522 -26.79847 -25.59471 -24.42425 -23.83866 -22.86175 -22.44110 -20.59119 -19.88486 -19.23071 -17.93814 -17.47036 -17.12019 -16.75947 -16.26090 -15.89270 -15.88014 -15.61012 -15.08831 -15.00647 -14.71616 -14.59352 -14.19205 -14.14157 -13.76435 -13.59101 -13.46741 -13.34424 -13.26397 -12.83332 -12.54707 -12.37693 -12.30651 -12.11045 -12.01958 -11.71479 -11.57714 -11.47326 -11.39017 -11.20011 -11.16289 -10.90364 -10.53593 -10.39283 -10.27894 -9.99038 -9.74435 -9.54871 -9.45186 -8.95873 -8.59765 -8.09389 -8.00296 -6.46639 -3.87884 2.68856 2.84623 3.11933 3.22994 3.29060 3.63554 3.79431 3.83868 3.90346 4.16141 4.58627 4.62896 4.70871 4.80713 4.91501 4.93287 4.97755 5.00834 5.12166 5.16759 5.18265 5.24267 5.27859 5.32299 5.36866 5.46034 5.54980 5.56850 5.60925 5.63333 5.72826 5.73565 5.77424 5.87524 5.91137 5.99878 6.00866 6.09418 6.19559 6.44585 6.98618 7.00808 7.01115 7.15169 7.50037 7.60220 8.00344 8.29949 8.55373 9.12548 9.48691 9.99429 10.70985 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.006644 B = 0.004173 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4213.124170 B = 6708.712085 C = 9899.141998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.070 3.930 5 H 0.090 0.910 6 C -0.168 4.168 7 C 0.516 3.484 8 O -0.527 6.527 9 N -0.713 5.713 10 C 0.129 3.871 11 C 0.031 3.969 12 H 0.065 0.935 13 C 0.073 3.927 14 O -0.387 6.387 15 C 0.065 3.935 16 C 0.022 3.978 17 N -0.507 5.507 18 C 0.038 3.962 19 C 0.445 3.555 20 O -0.579 6.579 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.104 0.896 24 C 0.023 3.977 25 N -0.900 5.900 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.412 0.588 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.036 0.964 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.051 0.949 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 5.905 -15.220 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.277 6.277 4 C 0.008 3.992 5 H 0.108 0.892 6 C -0.225 4.225 7 C 0.301 3.699 8 O -0.403 6.403 9 N -0.369 5.369 10 C 0.004 3.996 11 C -0.078 4.078 12 H 0.083 0.917 13 C -0.004 4.004 14 O -0.306 6.306 15 C -0.012 4.012 16 C -0.106 4.106 17 N -0.233 5.233 18 C -0.093 4.093 19 C 0.230 3.770 20 O -0.464 6.464 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.541 5.541 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.248 0.752 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.069 0.931 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.934 5.851 -15.630 16.946 hybrid contribution 0.428 -0.627 1.460 1.646 sum -2.506 5.224 -14.170 15.309 Atomic orbital electron populations 1.21719 0.93516 1.02167 1.03270 1.22603 0.95852 0.83562 1.00333 1.88020 1.18403 1.26354 1.94962 1.21859 0.83727 0.96906 0.96670 0.89244 1.22211 1.01715 1.03542 0.95074 1.20332 0.82556 0.87531 0.79522 1.90704 1.50304 1.48850 1.50431 1.45791 1.07165 1.24110 1.59813 1.21344 0.92575 0.87438 0.98195 1.22660 0.94081 0.93172 0.97890 0.91676 1.22631 0.81272 1.02349 0.94154 1.87963 1.18911 1.40611 1.83091 1.22701 0.97621 0.87809 0.93052 1.22860 0.87553 1.02891 0.97288 1.61777 1.06875 1.33259 1.21387 1.22003 1.01346 0.97174 0.88779 1.19636 0.85380 0.88528 0.83424 1.90491 1.46243 1.57947 1.51682 1.41880 1.51967 1.12678 1.13417 1.19720 1.35732 0.87578 0.99881 0.87862 1.25267 0.96783 1.00032 0.95792 1.69622 1.39751 1.36203 1.08489 0.85817 0.78111 0.81920 0.78594 1.19235 1.20737 1.20731 0.91928 0.91057 0.91627 0.93259 0.92907 0.91297 0.91248 0.90854 0.75168 0.90951 0.90444 0.92284 0.88504 0.91980 0.88601 0.94619 0.87478 0.88941 0.93104 0.77547 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.05 0.58 6.47 37.16 0.24 0.82 16 3 O -0.36 -5.06 9.53 -55.09 -0.52 -5.58 16 4 C 0.07 0.88 3.13 -27.88 -0.09 0.79 16 5 H 0.09 1.07 7.79 -51.93 -0.40 0.66 16 6 C -0.17 -1.58 9.48 37.16 0.35 -1.23 16 7 C 0.52 7.60 7.18 -10.99 -0.08 7.52 16 8 O -0.53 -9.80 16.50 -14.31 -0.24 -10.04 16 9 N -0.71 -9.04 5.01 -60.30 -0.30 -9.34 16 10 C 0.13 1.54 4.72 -4.05 -0.02 1.52 16 11 C 0.03 0.36 2.25 -67.60 -0.15 0.21 16 12 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 13 C 0.07 0.77 6.21 37.20 0.23 1.01 16 14 O -0.39 -4.79 10.83 -35.23 -0.38 -5.17 16 15 C 0.06 0.78 7.01 37.21 0.26 1.04 16 16 C 0.02 0.31 5.31 -3.71 -0.02 0.29 16 17 N -0.51 -7.31 3.49 -227.77 -0.79 -8.10 16 18 C 0.04 0.63 5.30 -4.98 -0.03 0.61 16 19 C 0.45 9.82 7.51 -10.98 -0.08 9.74 16 20 O -0.58 -14.31 14.44 5.54 0.08 -14.23 16 21 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 22 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16 23 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 26 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 29 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.44 7.87 -51.92 -0.41 0.03 16 34 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.07 0.56 7.87 -51.92 -0.41 0.15 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.59 7.93 -51.93 -0.41 0.18 16 38 H 0.41 5.04 7.22 -40.82 -0.29 4.74 16 39 H 0.07 0.96 6.38 -51.92 -0.33 0.63 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.61 7.28 -51.93 -0.38 0.23 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.11 1.82 6.44 -51.93 -0.33 1.49 16 47 H 0.09 1.48 5.65 -51.92 -0.29 1.19 16 48 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 49 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 50 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 404.35 15.07 6.09 6.09 Total: -1.00 -32.83 404.35 -7.83 -40.66 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -8.16 Total: 13.83 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 0.76 Total: 13.57 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.43 Total: -54.71 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -1.06 Total: -35.02 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.83 -7.83 -40.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484586355.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.777 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds