Wall clock time and date at job start Wed Apr 1 2020 02:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47442 * 2 1 4 4 C 1.42891 * 114.00318 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47282 * 330.00154 * 4 3 2 6 6 C 1.53002 * 109.47389 * 90.00292 * 4 3 2 7 7 C 1.50697 * 109.47446 * 210.00168 * 4 3 2 8 8 O 1.21284 * 120.00155 * 354.99880 * 7 4 3 9 9 N 1.34780 * 120.00366 * 174.99913 * 7 4 3 10 10 C 1.46492 * 120.00248 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.47294 * 184.98612 * 10 9 7 12 12 H 1.09001 * 109.50544 * 185.85275 * 11 10 9 13 13 C 1.53090 * 109.54319 * 65.73796 * 11 10 9 14 14 O 1.43016 * 109.26360 * 183.19653 * 13 11 10 15 15 C 1.43016 * 113.73721 * 58.66914 * 14 13 11 16 16 C 1.53107 * 109.26045 * 301.33430 * 15 14 13 17 17 N 1.47012 * 109.25547 * 56.84517 * 16 15 14 18 18 C 1.46895 * 110.99883 * 177.60969 * 17 16 15 19 19 C 1.50700 * 109.47116 * 287.57235 * 18 17 16 20 20 O 1.21295 * 120.00344 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00178 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00128 * 179.72835 * 21 19 18 23 23 H 1.07997 * 119.99860 * 0.26429 * 22 21 19 24 24 C 1.38954 * 120.00072 * 180.27164 * 22 21 19 25 25 N 1.31408 * 119.99592 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00100 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46785 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.46914 * 119.99999 * 26 24 22 29 29 H 1.48499 * 109.46935 * 240.00025 * 26 24 22 30 30 H 1.09005 * 109.47431 * 59.99428 * 1 2 3 31 31 H 1.08993 * 109.47647 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46931 * 300.00167 * 1 2 3 33 33 H 1.09007 * 109.46919 * 240.00383 * 2 1 3 34 34 H 1.08992 * 109.47208 * 120.00617 * 2 1 3 35 35 H 1.09008 * 109.46853 * 300.00257 * 6 4 3 36 36 H 1.09000 * 109.47514 * 59.99619 * 6 4 3 37 37 H 1.09001 * 109.47408 * 180.02562 * 6 4 3 38 38 H 0.97007 * 119.99752 * 359.97438 * 9 7 4 39 39 H 1.09008 * 109.47222 * 64.98578 * 10 9 7 40 40 H 1.08999 * 109.47240 * 304.98705 * 10 9 7 41 41 H 1.08997 * 109.50677 * 303.13258 * 13 11 10 42 42 H 1.09003 * 109.51020 * 63.26465 * 13 11 10 43 43 H 1.08994 * 109.50832 * 61.26609 * 15 14 13 44 44 H 1.08999 * 109.50786 * 181.35865 * 15 14 13 45 45 H 1.09002 * 109.50595 * 296.91512 * 16 15 14 46 46 H 1.08990 * 109.50784 * 176.78075 * 16 15 14 47 47 H 1.09009 * 109.47199 * 167.57287 * 18 17 16 48 48 H 1.08995 * 109.47672 * 47.57359 * 18 17 16 49 49 H 0.97003 * 119.99732 * 359.97438 * 21 19 18 50 50 H 0.97008 * 119.99327 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8636 0.6014 0.5129 6 6 3.9387 1.5006 -1.4433 7 6 3.8348 2.7262 0.7098 8 8 2.9866 3.5046 1.0913 9 7 5.1388 2.9936 0.9213 10 6 5.5315 4.2247 1.6115 11 6 7.0568 4.3452 1.6112 12 1 7.3541 5.2043 2.2127 13 6 7.5557 4.5289 0.1756 14 8 8.9854 4.5660 0.1742 15 6 9.5924 3.3906 0.7175 16 6 9.1141 3.1953 2.1588 17 7 7.6459 3.1226 2.1767 18 6 7.1475 2.8784 3.5367 19 6 7.4435 1.4547 3.9321 20 8 8.0133 0.7159 3.1570 21 7 7.0743 1.0019 5.1467 22 6 7.3387 -0.2950 5.5043 23 1 7.8466 -0.9525 4.8144 24 6 6.9530 -0.7634 6.7544 25 7 6.3354 0.0368 7.5939 26 14 7.3126 -2.5306 7.2413 27 1 8.0117 -3.2187 6.1264 28 1 8.1743 -2.5452 8.4507 29 1 6.0372 -3.2327 7.5337 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.6465 0.5848 -1.9572 36 1 3.5060 2.3592 -1.9569 37 1 5.0254 1.5862 -1.4437 38 1 5.8173 2.3709 0.6166 39 1 5.1694 4.1964 2.6393 40 1 5.0991 5.0831 1.0974 41 1 7.2127 3.6961 -0.4382 42 1 7.1670 5.4638 -0.2281 43 1 9.3087 2.5247 0.1195 44 1 10.6767 3.5020 0.7052 45 1 9.4443 4.0361 2.7689 46 1 9.5292 2.2700 2.5578 47 1 6.0708 3.0470 3.5649 48 1 7.6399 3.5584 4.2318 49 1 6.6184 1.5926 5.7665 50 1 6.0665 -0.2901 8.4668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484586355.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:26 Heat of formation + Delta-G solvation = -177.536793 kcal Electronic energy + Delta-G solvation = -31861.005272 eV Core-core repulsion = 27501.773956 eV Total energy + Delta-G solvation = -4359.231316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.49768 -40.66788 -39.69338 -38.75521 -37.07313 -36.01601 -35.34519 -33.59216 -33.26544 -32.27778 -30.95937 -30.36546 -27.89062 -27.12445 -25.36154 -25.34075 -23.74657 -23.43134 -21.64716 -21.22834 -20.71471 -19.87394 -18.52392 -18.12386 -18.03273 -17.33448 -17.29386 -16.88252 -16.61910 -16.54219 -16.19122 -16.07745 -15.79317 -15.63066 -15.49082 -15.11000 -14.84343 -14.64541 -14.41186 -14.22072 -13.92054 -13.79395 -13.48135 -13.41939 -13.20807 -13.09826 -13.01450 -12.88808 -12.82070 -12.40018 -12.39252 -12.30701 -12.12996 -12.11660 -12.04938 -11.53850 -11.43752 -11.02966 -10.79659 -10.49509 -10.25426 -10.05531 -9.99603 -9.37434 -8.46384 -5.94809 1.35878 1.41285 1.54692 1.55075 1.84904 2.05547 2.25664 2.54122 2.88686 2.94530 3.20444 3.32716 3.62596 3.70058 3.74355 3.91669 3.96149 4.01487 4.14888 4.16726 4.23503 4.26957 4.31059 4.34702 4.44211 4.45522 4.48979 4.59295 4.59907 4.71317 4.77154 4.77697 4.83439 4.87563 4.93139 4.99506 5.01573 5.16586 5.24161 5.37048 5.41405 5.74439 5.94229 6.04434 6.08015 6.17022 6.53087 6.59699 7.13291 7.18900 7.56972 8.11329 8.71360 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.006644 B = 0.004173 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4213.124170 B = 6708.712085 C = 9899.141998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.387 6.387 4 C 0.067 3.933 5 H 0.092 0.908 6 C -0.159 4.159 7 C 0.511 3.489 8 O -0.572 6.572 9 N -0.703 5.703 10 C 0.128 3.872 11 C 0.040 3.960 12 H 0.077 0.923 13 C 0.073 3.927 14 O -0.392 6.392 15 C 0.072 3.928 16 C 0.024 3.976 17 N -0.515 5.515 18 C 0.052 3.948 19 C 0.448 3.552 20 O -0.605 6.605 21 N -0.578 5.578 22 C -0.327 4.327 23 H 0.083 0.917 24 C -0.015 4.015 25 N -0.924 5.924 26 Si 0.991 3.009 27 H -0.270 1.270 28 H -0.273 1.273 29 H -0.274 1.274 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.415 0.585 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.122 0.878 43 H 0.059 0.941 44 H 0.115 0.885 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.101 0.899 48 H 0.066 0.934 49 H 0.392 0.608 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 6.070 -16.531 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.306 6.306 4 C 0.006 3.994 5 H 0.110 0.890 6 C -0.217 4.217 7 C 0.298 3.702 8 O -0.451 6.451 9 N -0.357 5.357 10 C 0.004 3.996 11 C -0.068 4.068 12 H 0.094 0.906 13 C -0.004 4.004 14 O -0.311 6.311 15 C -0.005 4.005 16 C -0.104 4.104 17 N -0.241 5.241 18 C -0.079 4.079 19 C 0.235 3.765 20 O -0.491 6.491 21 N -0.215 5.215 22 C -0.456 4.456 23 H 0.101 0.899 24 C -0.214 4.214 25 N -0.565 5.565 26 Si 0.815 3.185 27 H -0.194 1.194 28 H -0.198 1.198 29 H -0.199 1.199 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.253 0.747 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.140 0.860 43 H 0.078 0.922 44 H 0.132 0.868 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.119 0.881 48 H 0.084 0.916 49 H 0.225 0.775 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.518 6.027 -16.959 18.173 hybrid contribution 0.328 -0.642 1.817 1.955 sum -2.190 5.385 -15.142 16.220 Atomic orbital electron populations 1.21749 0.92647 1.03476 1.02616 1.22819 0.96673 0.82463 1.01101 1.87990 1.19217 1.28235 1.95196 1.21996 0.83436 0.95623 0.98387 0.88992 1.22177 1.02467 1.04232 0.92797 1.20816 0.82589 0.87845 0.78986 1.90676 1.51480 1.50504 1.52484 1.45772 1.06680 1.24279 1.58993 1.21398 0.92880 0.87661 0.97615 1.22687 0.93396 0.92046 0.98714 0.90570 1.22792 0.80518 1.03931 0.93193 1.87971 1.19759 1.40484 1.82861 1.22669 0.98682 0.87848 0.91278 1.22794 0.87235 1.01426 0.98945 1.61727 1.07248 1.35326 1.19827 1.21798 1.02095 0.93441 0.90585 1.20554 0.83366 0.90402 0.82173 1.90470 1.46902 1.59490 1.52227 1.41970 1.52952 1.12159 1.14431 1.19689 1.36913 0.88723 1.00305 0.89916 1.26026 0.96278 1.03757 0.95345 1.69693 1.40250 1.37730 1.08823 0.84894 0.78155 0.77278 0.78183 1.19422 1.19828 1.19945 0.91619 0.88759 0.93211 0.90988 0.93550 0.89656 0.91636 0.89378 0.74744 0.92264 0.88967 0.91819 0.86022 0.92246 0.86753 0.94002 0.90688 0.88095 0.91625 0.77454 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 10.28 71.98 0.74 -1.95 16 2 C 0.05 0.96 6.47 71.98 0.47 1.42 16 3 O -0.39 -10.85 9.53 -129.99 -1.24 -12.09 16 4 C 0.07 1.63 3.13 29.85 0.09 1.73 16 5 H 0.09 2.16 7.79 -2.39 -0.02 2.14 16 6 C -0.16 -2.72 9.48 71.98 0.68 -2.04 16 7 C 0.51 14.93 7.18 87.66 0.63 15.56 16 8 O -0.57 -21.52 16.50 15.95 0.26 -21.25 16 9 N -0.70 -17.08 5.01 -463.06 -2.32 -19.40 16 10 C 0.13 2.88 4.72 86.38 0.41 3.29 16 11 C 0.04 0.84 2.25 44.92 0.10 0.95 16 12 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 13 C 0.07 1.32 6.21 72.01 0.45 1.77 16 14 O -0.39 -8.57 10.83 -148.98 -1.61 -10.18 16 15 C 0.07 1.60 7.01 72.02 0.50 2.10 16 16 C 0.02 0.65 5.31 86.32 0.46 1.11 16 17 N -0.52 -14.20 3.49 -874.54 -3.05 -17.25 16 18 C 0.05 1.69 5.30 85.56 0.45 2.15 16 19 C 0.45 20.02 7.51 87.66 0.66 20.67 16 20 O -0.61 -30.44 14.44 -3.07 -0.04 -30.48 16 21 N -0.58 -28.86 5.29 -306.98 -1.62 -30.48 16 22 C -0.33 -18.03 9.68 84.04 0.81 -17.21 16 23 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 25 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 26 Si 0.99 42.32 29.55 68.60 2.03 44.35 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 29 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 30 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.07 1.16 7.87 -2.38 -0.02 1.15 16 34 H 0.05 1.01 8.08 -2.39 -0.02 0.99 16 35 H 0.08 1.18 7.87 -2.38 -0.02 1.17 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.23 7.93 -2.39 -0.02 1.21 16 38 H 0.42 9.59 7.22 -92.70 -0.67 8.92 16 39 H 0.06 1.52 6.38 -2.38 -0.02 1.51 16 40 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 1.12 7.28 -2.39 -0.02 1.10 16 42 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 2.57 6.44 -2.39 -0.02 2.55 16 47 H 0.10 3.17 5.65 -2.38 -0.01 3.16 16 48 H 0.07 1.98 8.05 -2.39 -0.02 1.96 16 49 H 0.39 19.13 7.90 -92.71 -0.73 18.40 16 50 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -71.94 404.35 -0.84 -72.78 By element: Atomic # 1 Polarization: 44.80 SS G_CDS: -0.44 Total: 44.36 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: 6.92 Total: 29.24 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -6.71 Total: -116.72 kcal Atomic # 8 Polarization: -71.37 SS G_CDS: -2.63 Total: -74.00 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -71.94 -0.84 -72.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484586355.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.761 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds