Wall clock time and date at job start Wed Apr 1 2020 02:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00032 * 2 1 4 4 C 1.52998 * 109.47449 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47295 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99686 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99716 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99793 * 185.11869 * 7 5 4 9 9 C 1.53000 * 109.54323 * 57.37770 * 8 7 5 10 10 N 1.46908 * 109.47050 * 54.37953 * 9 8 7 11 11 C 1.46903 * 110.99982 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.46955 * 180.02562 * 11 10 9 13 13 O 1.21292 * 119.99878 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99836 * 180.02562 * 12 11 10 15 15 C 1.37096 * 119.99845 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00239 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99851 * 179.97438 * 15 14 12 18 18 N 1.31409 * 119.99882 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99861 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47349 * 60.00119 * 19 17 15 21 21 H 1.48497 * 109.46945 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47135 * 300.00202 * 19 17 15 23 23 C 1.53180 * 109.54411 * 177.55464 * 8 7 5 24 24 C 1.53106 * 109.15659 * 63.06492 * 23 8 7 25 25 O 1.42904 * 109.48624 * 57.47389 * 24 23 8 26 26 C 1.42907 * 114.09837 * 298.89142 * 25 24 23 27 27 C 1.53086 * 109.41482 * 61.15393 * 26 25 24 28 28 H 1.09006 * 109.47333 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47043 * 299.99798 * 1 2 3 30 30 H 1.09001 * 109.47676 * 59.99826 * 1 2 3 31 31 H 1.08996 * 109.47431 * 60.00030 * 3 2 1 32 32 H 1.09005 * 109.47234 * 300.00431 * 3 2 1 33 33 H 1.09005 * 109.47339 * 59.99979 * 4 3 2 34 34 H 1.09005 * 109.46896 * 300.00199 * 4 3 2 35 35 H 0.97006 * 120.00095 * 5.11995 * 7 5 4 36 36 H 1.08996 * 109.47405 * 174.37507 * 9 8 7 37 37 H 1.09001 * 109.47244 * 294.38147 * 9 8 7 38 38 H 1.00903 * 110.99628 * 56.04567 * 10 9 8 39 39 H 1.08997 * 109.46818 * 299.99856 * 11 10 9 40 40 H 1.09001 * 109.46820 * 59.99762 * 11 10 9 41 41 H 0.96994 * 119.99837 * 359.97438 * 14 12 11 42 42 H 0.97000 * 119.99933 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.52328 * 182.88495 * 23 8 7 44 44 H 1.09002 * 109.52215 * 303.07420 * 23 8 7 45 45 H 1.08995 * 109.40475 * 297.49394 * 24 23 8 46 46 H 1.08997 * 109.48960 * 177.51071 * 24 23 8 47 47 H 1.09001 * 109.47617 * 301.17391 * 26 25 24 48 48 H 1.09004 * 109.48745 * 181.14625 * 26 25 24 49 49 H 1.09004 * 109.51945 * 182.48084 * 27 26 25 50 50 H 1.09003 * 109.57542 * 62.33363 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5614 0.0000 6 8 3.4354 3.5426 0.0004 7 7 5.4887 2.7023 0.0001 8 6 6.0850 4.0355 0.1139 9 6 5.5947 4.7076 1.3980 10 7 5.8693 3.8316 2.5448 11 6 5.4104 4.4455 3.7980 12 6 5.7089 3.5202 4.9494 13 8 6.2502 2.4540 4.7460 14 7 5.3734 3.8770 6.2051 15 6 5.6445 3.0350 7.2525 16 1 6.1273 2.0860 7.0715 17 6 5.2991 3.4030 8.5471 18 7 4.7131 4.5584 8.7675 19 14 5.6678 2.2555 9.9742 20 1 7.1309 2.0123 10.0486 21 1 5.2047 2.8764 11.2410 22 1 4.9616 0.9656 9.7673 23 6 7.6115 3.9127 0.1505 24 6 8.0992 3.3137 -1.1714 25 8 7.6615 4.1340 -2.2567 26 6 6.2412 4.2450 -2.3683 27 6 5.6791 4.8834 -1.0954 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8909 34 1 3.8574 0.6436 0.8891 35 1 6.0585 1.9209 -0.0752 36 1 6.1144 5.6562 1.5329 37 1 4.5221 4.8878 1.3270 38 1 6.8495 3.5973 2.5943 39 1 5.9284 5.3924 3.9497 40 1 4.3364 4.6235 3.7434 41 1 4.9402 4.7294 6.3676 42 1 4.4716 4.8152 9.6712 43 1 8.0532 4.8998 0.2867 44 1 7.9050 3.2643 0.9760 45 1 7.6905 2.3098 -1.2867 46 1 9.1880 3.2648 -1.1687 47 1 5.8082 3.2533 -2.4993 48 1 5.9915 4.8672 -3.2278 49 1 4.5919 4.9287 -1.1602 50 1 6.0796 5.8911 -0.9847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484855916.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:34 Heat of formation + Delta-G solvation = -164.478635 kcal Electronic energy + Delta-G solvation = -31438.589499 eV Core-core repulsion = 27079.924428 eV Total energy + Delta-G solvation = -4358.665071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93046 -38.88791 -38.24812 -37.78388 -36.27316 -34.31544 -33.67359 -32.45236 -31.41421 -31.21133 -31.02015 -28.13551 -26.77122 -25.65895 -24.12656 -24.09070 -23.49871 -22.09261 -20.80104 -19.48131 -19.17161 -17.89724 -17.62432 -16.64291 -16.53756 -16.37857 -16.25134 -15.87836 -15.57664 -15.24504 -15.17325 -14.87742 -14.66651 -14.49538 -14.36653 -13.88798 -13.70769 -13.41518 -13.30729 -13.15918 -12.85535 -12.67266 -12.40970 -12.12232 -11.99473 -11.80671 -11.58387 -11.54361 -11.51185 -11.42416 -11.29991 -11.01484 -10.85646 -10.65605 -10.44720 -10.21639 -9.90317 -9.79953 -9.57844 -9.49890 -9.00550 -8.44093 -8.03689 -7.95449 -6.41532 -3.82510 2.65106 2.95589 3.19737 3.25437 3.29701 3.62985 3.79263 3.91378 4.07213 4.26260 4.38709 4.58362 4.66208 4.71765 4.83766 4.90289 4.93764 5.01119 5.12831 5.16273 5.19461 5.24351 5.25869 5.34265 5.41214 5.44059 5.47631 5.51051 5.54317 5.59350 5.68366 5.76502 5.79388 5.80579 5.83548 5.94641 6.00486 6.04858 6.27011 6.48954 6.93961 6.98767 7.20625 7.49357 7.54719 7.67582 8.06036 8.23948 8.61322 9.17612 9.54561 10.05860 10.76175 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008719 B = 0.003000 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.458056 B = 9330.374088 C =11676.895573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.079 3.921 4 C -0.141 4.141 5 C 0.535 3.465 6 O -0.543 6.543 7 N -0.706 5.706 8 C 0.187 3.813 9 C 0.047 3.953 10 N -0.660 5.660 11 C 0.052 3.948 12 C 0.442 3.558 13 O -0.585 6.585 14 N -0.563 5.563 15 C -0.300 4.300 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.165 4.165 24 C 0.063 3.937 25 O -0.384 6.384 26 C 0.066 3.934 27 C -0.166 4.166 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.399 0.601 36 H 0.032 0.968 37 H 0.094 0.906 38 H 0.343 0.657 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.092 0.908 49 H 0.098 0.902 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 -1.228 -22.253 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.315 6.315 3 C 0.002 3.998 4 C -0.181 4.181 5 C 0.322 3.678 6 O -0.421 6.421 7 N -0.358 5.358 8 C 0.100 3.900 9 C -0.083 4.083 10 N -0.293 5.293 11 C -0.081 4.081 12 C 0.228 3.772 13 O -0.469 6.469 14 N -0.200 5.200 15 C -0.430 4.430 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.203 4.203 24 C -0.014 4.014 25 O -0.302 6.302 26 C -0.011 4.011 27 C -0.205 4.205 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.234 0.766 36 H 0.050 0.950 37 H 0.113 0.887 38 H 0.163 0.837 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.115 0.885 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.117 0.883 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.134 -1.595 -22.372 22.458 hybrid contribution 0.413 0.479 1.394 1.531 sum -0.721 -1.116 -20.978 21.020 Atomic orbital electron populations 1.22719 0.80736 1.02633 1.00157 1.87799 1.19955 1.28165 1.95557 1.22137 0.91968 0.84103 1.01624 1.21474 0.95463 0.95573 1.05632 1.20126 0.82105 0.90785 0.74808 1.90619 1.61104 1.40544 1.49793 1.45768 1.06508 1.08694 1.74785 1.20276 0.91999 0.83080 0.94627 1.22400 1.03166 0.93343 0.89424 1.60009 1.24809 1.43498 1.00953 1.21652 1.01304 0.95412 0.89711 1.19793 0.85155 0.88564 0.83732 1.90503 1.47385 1.24740 1.84273 1.41856 1.53237 1.19881 1.05004 1.19647 1.36964 1.01486 0.84876 0.88001 1.25263 0.96916 0.96913 0.98824 1.69605 1.41183 1.20874 1.22646 0.85920 0.78908 0.79807 0.79591 1.19925 1.20974 1.19868 1.22550 0.94345 1.03963 0.99420 1.22548 1.00098 0.93163 0.85589 1.87934 1.21962 1.70427 1.49911 1.22517 0.80877 1.00155 0.97534 1.22596 1.04065 0.99483 0.94336 0.89650 0.93825 0.94156 0.92165 0.92736 0.88627 0.87462 0.76625 0.94968 0.88749 0.83722 0.94064 0.89717 0.77477 0.91813 0.89474 0.89277 0.93178 0.88528 0.93241 0.89010 0.88345 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.40 -4.75 10.70 -35.23 -0.38 -5.13 16 3 C 0.08 0.92 5.23 37.16 0.19 1.11 16 4 C -0.14 -1.50 6.07 -27.88 -0.17 -1.67 16 5 C 0.53 6.44 7.24 -10.99 -0.08 6.36 16 6 O -0.54 -7.96 12.28 5.56 0.07 -7.89 16 7 N -0.71 -7.23 3.97 -47.44 -0.19 -7.42 16 8 C 0.19 1.95 0.43 -131.64 -0.06 1.90 16 9 C 0.05 0.61 4.32 -3.82 -0.02 0.60 16 10 N -0.66 -10.46 5.84 -115.05 -0.67 -11.13 16 11 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 12 C 0.44 10.49 7.82 -10.99 -0.09 10.40 16 13 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 14 N -0.56 -14.44 5.29 -10.96 -0.06 -14.49 16 15 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 16 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 18 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 19 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.16 -1.48 4.69 -26.58 -0.12 -1.61 16 24 C 0.06 0.51 6.67 37.21 0.25 0.76 16 25 O -0.38 -3.85 10.77 -35.23 -0.38 -4.23 16 26 C 0.07 0.59 6.68 37.20 0.25 0.84 16 27 C -0.17 -1.65 4.80 -26.60 -0.13 -1.78 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.40 3.37 7.46 -40.82 -0.30 3.07 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 1.43 6.34 -51.93 -0.33 1.10 16 38 H 0.34 5.44 6.80 -39.29 -0.27 5.18 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 42 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.83 6.86 -51.93 -0.36 0.47 16 45 H 0.05 0.36 7.05 -51.93 -0.37 -0.01 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.43 7.75 -51.93 -0.40 0.03 16 48 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.10 1.14 6.15 -51.93 -0.32 0.82 16 50 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -33.27 400.51 -7.00 -40.27 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -8.09 Total: 16.27 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 0.87 Total: 11.19 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.19 Total: -57.07 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.60 Total: -32.83 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.27 -7.00 -40.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484855916.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.206 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds