Wall clock time and date at job start Wed Apr 1 2020 02:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47369 * 2 1 4 4 C 1.53009 * 109.46945 * 119.99899 * 2 1 3 5 5 N 1.46490 * 109.47114 * 176.64895 * 4 2 1 6 6 C 1.34775 * 119.99920 * 185.05210 * 5 4 2 7 7 O 1.21281 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00113 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.46953 * 180.02562 * 8 6 5 10 10 O 1.42969 * 109.47190 * 294.99774 * 9 8 6 11 11 C 1.43086 * 113.76748 * 181.20504 * 10 9 8 12 12 C 1.53259 * 108.94555 * 57.97641 * 11 10 9 13 13 C 1.53267 * 108.84070 * 305.47430 * 12 11 10 14 14 O 1.42972 * 109.46932 * 175.00293 * 9 8 6 15 15 N 1.46904 * 109.47301 * 239.99624 * 2 1 3 16 16 C 1.46899 * 111.00008 * 72.23020 * 15 2 1 17 17 C 1.46900 * 110.99723 * 308.27409 * 15 2 1 18 18 C 1.50703 * 109.46739 * 189.99662 * 17 15 2 19 19 O 1.21289 * 120.00354 * 0.02562 * 18 17 15 20 20 N 1.34779 * 119.99456 * 180.02562 * 18 17 15 21 21 C 1.37098 * 119.99462 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00309 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99811 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99942 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99809 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47099 * 60.00600 * 25 23 21 27 27 H 1.48505 * 109.46744 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47261 * 300.00240 * 25 23 21 29 29 H 1.09004 * 109.46302 * 60.00174 * 1 2 3 30 30 H 1.08994 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47272 * 300.00713 * 1 2 3 32 32 H 1.09002 * 109.46740 * 296.64566 * 4 2 1 33 33 H 1.08995 * 109.46827 * 56.64733 * 4 2 1 34 34 H 0.97001 * 120.00686 * 5.04978 * 5 4 2 35 35 H 1.08999 * 109.47232 * 299.99613 * 8 6 5 36 36 H 1.08997 * 109.47079 * 60.00492 * 8 6 5 37 37 H 1.09000 * 109.47282 * 55.00120 * 9 8 6 38 38 H 1.08998 * 109.56499 * 298.13609 * 11 10 9 39 39 H 1.09001 * 109.55952 * 177.80916 * 11 10 9 40 40 H 1.08993 * 109.58211 * 185.66389 * 12 11 10 41 41 H 1.09001 * 109.68387 * 65.33706 * 12 11 10 42 42 H 1.08999 * 109.55500 * 294.67962 * 13 12 11 43 43 H 1.09001 * 109.64806 * 174.41722 * 13 12 11 44 44 H 1.09003 * 109.46987 * 53.71969 * 16 15 2 45 45 H 1.08996 * 109.47319 * 173.72069 * 16 15 2 46 46 H 1.09002 * 109.46950 * 293.72235 * 16 15 2 47 47 H 1.09000 * 109.47515 * 310.00262 * 17 15 2 48 48 H 1.09001 * 109.46845 * 70.00617 * 17 15 2 49 49 H 0.96995 * 120.00440 * 0.02562 * 20 18 17 50 50 H 0.97000 * 120.00123 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5026 -0.7916 1.2097 6 6 4.1704 -1.4754 2.1599 7 8 3.5603 -2.0321 3.0481 8 6 5.6751 -1.5483 2.1189 9 6 6.1780 -2.3783 3.3017 10 8 5.8651 -1.7051 4.5236 11 6 6.3208 -2.3917 5.6933 12 6 7.8385 -2.5828 5.5987 13 6 8.1671 -3.2890 4.2787 14 8 7.5942 -2.5454 3.1988 15 7 2.0197 -0.6926 -1.1994 16 6 1.8006 0.1204 -2.4031 17 6 1.3943 -2.0147 -1.3360 18 6 2.0913 -2.7901 -2.4242 19 8 3.0182 -2.2906 -3.0263 20 7 1.6846 -4.0385 -2.7283 21 6 2.3191 -4.7441 -3.7179 22 1 3.1449 -4.2996 -4.2534 23 6 1.9002 -6.0314 -4.0311 24 7 0.8957 -6.5724 -3.3791 25 14 2.7652 -6.9930 -5.3790 26 1 4.1986 -7.1577 -5.0276 27 1 2.1323 -8.3293 -5.5176 28 1 2.6517 -6.2564 -6.6633 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7265 -0.1738 2.1383 33 1 1.6284 -1.7301 1.2799 34 1 3.9907 -0.3461 0.4996 35 1 5.9909 -2.0165 1.1866 36 1 6.0894 -0.5419 2.1786 37 1 5.6951 -3.3555 3.2913 38 1 5.8340 -3.3648 5.7583 39 1 6.0818 -1.8025 6.5787 40 1 8.1828 -3.1919 6.4344 41 1 8.3332 -1.6119 5.6262 42 1 7.7502 -4.2961 4.2901 43 1 9.2483 -3.3432 4.1513 44 1 2.2382 1.1083 -2.2590 45 1 2.2705 -0.3638 -3.2591 46 1 0.7304 0.2201 -2.5844 47 1 1.4783 -2.5557 -0.3935 48 1 0.3419 -1.8940 -1.5931 49 1 0.9432 -4.4379 -2.2470 50 1 0.6031 -7.4710 -3.5979 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485294890.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:47 Heat of formation + Delta-G solvation = -158.843568 kcal Electronic energy + Delta-G solvation = -31081.498626 eV Core-core repulsion = 26723.077909 eV Total energy + Delta-G solvation = -4358.420717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.32312 -39.51989 -38.70820 -37.19525 -35.79170 -34.29240 -33.77187 -33.37303 -31.24759 -31.16447 -30.11529 -28.04691 -26.52028 -26.17216 -24.95529 -24.04286 -23.27697 -21.36556 -20.51300 -20.07073 -18.87551 -17.82776 -17.73868 -16.86560 -16.78357 -16.60864 -15.95055 -15.87985 -15.36119 -15.08376 -14.93564 -14.77624 -14.65092 -14.34842 -14.03896 -13.79269 -13.51935 -13.48339 -13.25458 -13.08842 -12.87847 -12.68646 -12.29830 -12.09419 -11.96039 -11.79246 -11.75828 -11.47355 -11.30582 -11.28527 -11.22445 -11.14014 -10.85895 -10.72597 -10.43747 -10.20556 -10.20404 -9.83833 -9.72718 -9.45951 -8.87473 -8.46546 -7.97542 -7.85104 -6.40605 -3.81476 2.79287 2.97425 3.20279 3.26090 3.30160 3.49947 3.71139 3.91433 4.00636 4.24688 4.45932 4.47298 4.66707 4.70879 4.82113 4.85768 4.96835 5.08088 5.11590 5.15226 5.16476 5.22629 5.28229 5.37163 5.48580 5.48819 5.50813 5.54251 5.60716 5.65109 5.76410 5.78062 5.81218 5.88754 5.95513 6.02927 6.15399 6.29086 6.52187 6.59823 6.66063 7.01744 7.23277 7.34516 7.55725 7.68080 8.07011 8.37890 8.62752 9.18975 9.55696 10.07377 10.77101 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008845 B = 0.002854 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.793433 B = 9808.015966 C =12059.485100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.064 3.936 3 H 0.088 0.912 4 C 0.130 3.870 5 N -0.712 5.712 6 C 0.521 3.479 7 O -0.540 6.540 8 C -0.128 4.128 9 C 0.265 3.735 10 O -0.379 6.379 11 C 0.058 3.942 12 C -0.193 4.193 13 C 0.058 3.942 14 O -0.394 6.394 15 N -0.510 5.510 16 C 0.021 3.979 17 C 0.042 3.958 18 C 0.445 3.555 19 O -0.579 6.579 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.409 0.591 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.058 0.942 45 H 0.097 0.903 46 H 0.017 0.983 47 H 0.087 0.913 48 H 0.051 0.949 49 H 0.391 0.609 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.297 11.266 15.572 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.045 4.045 3 H 0.106 0.894 4 C 0.006 3.994 5 N -0.364 5.364 6 C 0.306 3.694 7 O -0.417 6.417 8 C -0.168 4.168 9 C 0.169 3.831 10 O -0.299 6.299 11 C -0.018 4.018 12 C -0.231 4.231 13 C -0.018 4.018 14 O -0.315 6.315 15 N -0.234 5.234 16 C -0.126 4.126 17 C -0.089 4.089 18 C 0.230 3.770 19 O -0.463 6.463 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.245 0.755 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.077 0.923 45 H 0.116 0.884 46 H 0.036 0.964 47 H 0.105 0.895 48 H 0.069 0.931 49 H 0.224 0.776 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.895 11.184 15.670 20.449 hybrid contribution -0.769 -0.886 -0.525 1.285 sum 6.127 10.298 15.145 19.312 Atomic orbital electron populations 1.22404 0.96553 1.03014 1.02486 1.22055 0.93515 0.98306 0.90647 0.89375 1.21380 0.80263 1.01197 0.96546 1.45694 1.07343 1.54273 1.29064 1.20090 0.89161 0.78515 0.81585 1.90709 1.69887 1.45594 1.35558 1.21447 0.93261 1.03511 0.98616 1.22888 0.80081 0.95242 0.84849 1.88158 1.78271 1.49435 1.14023 1.22594 0.92559 0.97853 0.88832 1.22811 0.98256 1.02930 0.99118 1.22635 0.99474 0.93979 0.85725 1.88069 1.22638 1.74988 1.45814 1.61809 1.57231 1.02105 1.02229 1.22554 0.98627 0.97147 0.94313 1.21935 0.96365 0.90740 0.99906 1.19729 0.87124 0.83248 0.86880 1.90467 1.31335 1.69411 1.55111 1.41862 1.31821 1.12605 1.33779 1.19632 1.14722 0.96202 1.12279 0.87987 1.25257 0.96687 0.97130 0.98853 1.69604 1.26587 1.16512 1.41620 0.85933 0.79308 0.78319 0.80743 1.19879 1.21005 1.19947 0.91910 0.91658 0.91905 0.91457 0.91217 0.75522 0.86209 0.87376 0.91619 0.92747 0.88498 0.89819 0.90081 0.92684 0.88256 0.92343 0.88437 0.96441 0.89478 0.93150 0.77554 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 8.42 37.16 0.31 -1.60 16 2 C 0.06 0.73 2.42 -67.71 -0.16 0.57 16 3 H 0.09 0.88 7.94 -51.93 -0.41 0.47 16 4 C 0.13 1.62 4.95 -4.04 -0.02 1.60 16 5 N -0.71 -9.10 5.37 -60.30 -0.32 -9.42 16 6 C 0.52 7.48 7.71 -10.98 -0.08 7.40 16 7 O -0.54 -9.56 15.41 -8.86 -0.14 -9.70 16 8 C -0.13 -1.55 5.78 -27.88 -0.16 -1.72 16 9 C 0.26 3.46 2.80 37.16 0.10 3.57 16 10 O -0.38 -5.12 9.77 -64.76 -0.63 -5.75 16 11 C 0.06 0.58 6.96 37.29 0.26 0.84 16 12 C -0.19 -1.54 6.35 -26.46 -0.17 -1.71 16 13 C 0.06 0.53 6.96 37.30 0.26 0.79 16 14 O -0.39 -4.87 10.54 -59.03 -0.62 -5.49 16 15 N -0.51 -7.61 4.03 -236.32 -0.95 -8.56 16 16 C 0.02 0.31 8.90 60.06 0.53 0.85 16 17 C 0.04 0.72 4.32 -4.97 -0.02 0.70 16 18 C 0.44 10.24 7.52 -10.98 -0.08 10.16 16 19 O -0.58 -14.95 13.88 5.55 0.08 -14.88 16 20 N -0.56 -14.22 5.29 -10.96 -0.06 -14.27 16 21 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 29 H 0.06 0.65 6.91 -51.93 -0.36 0.29 16 30 H 0.06 0.73 6.54 -51.93 -0.34 0.39 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.99 6.58 -51.93 -0.34 0.65 16 34 H 0.41 4.79 8.29 -40.82 -0.34 4.45 16 35 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.92 7.96 -51.93 -0.41 0.51 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.72 7.98 -51.93 -0.41 0.30 16 45 H 0.10 1.80 5.93 -51.93 -0.31 1.50 16 46 H 0.02 0.24 6.95 -51.93 -0.36 -0.12 16 47 H 0.09 1.47 6.26 -51.93 -0.32 1.14 16 48 H 0.05 0.81 6.81 -51.93 -0.35 0.46 16 49 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -33.62 399.41 -8.43 -42.04 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -8.03 Total: 14.36 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 0.53 Total: 13.53 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.61 Total: -56.17 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.31 Total: -35.81 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.62 -8.43 -42.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485294890.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.802 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds