Wall clock time and date at job start Wed Apr 1 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99828 * 2 1 4 4 C 1.52999 * 109.47130 * 90.00234 * 3 2 1 5 5 H 1.09007 * 109.47490 * 59.99494 * 4 3 2 6 6 O 1.42906 * 109.47004 * 299.99835 * 4 3 2 7 7 C 1.52999 * 109.47577 * 179.97438 * 4 3 2 8 8 N 1.46894 * 109.47186 * 184.99637 * 7 4 3 9 9 C 1.46910 * 110.99667 * 179.97438 * 8 7 4 10 10 C 1.50700 * 109.46661 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00271 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99255 * 179.72585 * 10 9 8 13 13 C 1.37108 * 119.99548 * 180.27558 * 12 10 9 14 14 H 1.07996 * 119.99862 * 359.97438 * 13 12 10 15 15 C 1.38945 * 119.99916 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00178 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99928 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47471 * 89.99787 * 17 15 13 19 19 H 1.48500 * 109.47228 * 209.99642 * 17 15 13 20 20 H 1.48504 * 109.47375 * 329.99734 * 17 15 13 21 21 C 1.34771 * 119.99898 * 180.02562 * 2 1 3 22 22 O 1.21278 * 120.00109 * 184.64781 * 21 2 1 23 23 C 1.50692 * 120.00315 * 4.64179 * 21 2 1 24 24 H 1.09005 * 109.52448 * 46.06191 * 23 21 2 25 25 C 1.53180 * 109.52674 * 166.19454 * 23 21 2 26 26 C 1.53179 * 109.03687 * 176.88972 * 25 23 21 27 27 C 1.53094 * 109.16225 * 303.01267 * 26 25 23 28 28 O 1.42906 * 109.41063 * 57.61212 * 27 26 25 29 29 C 1.42898 * 114.09997 * 298.84057 * 28 27 26 30 30 H 1.09001 * 109.46757 * 84.48894 * 1 2 3 31 31 H 1.08997 * 109.47093 * 204.48989 * 1 2 3 32 32 H 1.09004 * 109.46995 * 324.49327 * 1 2 3 33 33 H 1.08996 * 109.47574 * 330.00107 * 3 2 1 34 34 H 1.09000 * 109.47109 * 209.99641 * 3 2 1 35 35 H 0.96695 * 113.99846 * 299.99825 * 6 4 3 36 36 H 1.09002 * 109.46669 * 64.99867 * 7 4 3 37 37 H 1.08998 * 109.46817 * 305.00416 * 7 4 3 38 38 H 1.00904 * 111.00062 * 56.05266 * 8 7 4 39 39 H 1.09000 * 109.47079 * 60.00317 * 9 8 7 40 40 H 1.08998 * 109.46884 * 300.00131 * 9 8 7 41 41 H 0.96991 * 120.00479 * 0.27389 * 12 10 9 42 42 H 0.97000 * 120.00247 * 179.97438 * 16 15 13 43 43 H 1.09007 * 109.53931 * 296.74979 * 25 23 21 44 44 H 1.08996 * 109.54059 * 57.01547 * 25 23 21 45 45 H 1.08999 * 109.52438 * 62.92029 * 26 25 23 46 46 H 1.09000 * 109.51845 * 183.11149 * 26 25 23 47 47 H 1.09001 * 109.48056 * 177.59487 * 27 26 25 48 48 H 1.08993 * 109.48189 * 297.63438 * 27 26 25 49 49 H 1.09004 * 109.48068 * 301.17762 * 29 28 27 50 50 H 1.09005 * 109.48243 * 181.14389 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 1 3.0416 0.9507 1.9564 6 8 1.2039 1.8813 2.1162 7 6 3.2181 3.0351 1.4426 8 7 3.5673 3.3987 2.8223 9 6 4.3056 4.6683 2.8613 10 6 4.6463 5.0074 4.2896 11 8 4.3071 4.2650 5.1867 12 7 5.3323 6.1333 4.5695 13 6 5.6473 6.4390 5.8684 14 1 5.3453 5.7779 6.6672 15 6 6.3549 7.5994 6.1570 16 7 6.6564 7.8927 7.4019 17 14 6.8766 8.7432 4.7753 18 1 5.8107 9.7491 4.5362 19 1 8.1345 9.4356 5.1542 20 1 7.0995 7.9543 3.5371 21 6 2.1389 -1.1672 -0.0005 22 8 3.3487 -1.1690 0.0846 23 6 1.3892 -2.4700 -0.1067 24 1 0.6434 -2.3977 -0.8984 25 6 2.3708 -3.6007 -0.4297 26 6 1.6100 -4.9299 -0.4583 27 6 0.9084 -5.1363 0.8867 28 8 0.0338 -4.0349 1.1401 29 6 0.6960 -2.7715 1.2246 30 1 -0.3633 0.0987 -1.0229 31 1 -0.3633 -0.9352 0.4260 32 1 -0.3633 0.8366 0.5969 33 1 1.6085 2.0284 -0.5138 34 1 3.1499 1.1384 -0.5138 35 1 0.6268 2.5440 1.7127 36 1 2.5934 3.8157 1.0082 37 1 4.1287 2.9285 0.8532 38 1 4.0924 2.6617 3.2687 39 1 3.6889 5.4603 2.4366 40 1 5.2238 4.5725 2.2820 41 1 5.6032 6.7272 3.8521 42 1 7.1508 8.7026 7.6034 43 1 2.8267 -3.4207 -1.4034 44 1 3.1458 -3.6404 0.3356 45 1 0.8681 -4.9080 -1.2565 46 1 2.3103 -5.7467 -0.6329 47 1 0.3305 -6.0601 0.8572 48 1 1.6536 -5.1986 1.6796 49 1 1.4385 -2.8029 2.0221 50 1 -0.0349 -1.9916 1.4387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486266130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:22 Heat of formation + Delta-G solvation = -156.132464 kcal Electronic energy + Delta-G solvation = -30237.478256 eV Core-core repulsion = 25879.175102 eV Total energy + Delta-G solvation = -4358.303154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98307 -39.22006 -38.52996 -37.79997 -35.69265 -34.80874 -34.07113 -33.82706 -32.17417 -31.64973 -30.49640 -27.88983 -26.91841 -25.67892 -25.19363 -24.17860 -23.11440 -21.93515 -21.01464 -19.55944 -19.36919 -18.35584 -17.62138 -17.11647 -16.92408 -16.65438 -16.20198 -16.03561 -15.82844 -15.45132 -15.23060 -14.94686 -14.80377 -14.51201 -14.18638 -13.99900 -13.72917 -13.60980 -13.26913 -13.19082 -13.16561 -13.01528 -12.64894 -12.60316 -12.11896 -12.08557 -12.02259 -11.87212 -11.66501 -11.53061 -11.36898 -11.22594 -11.14695 -10.86626 -10.59001 -10.48010 -10.19679 -9.96159 -9.88436 -9.55844 -8.92355 -8.55492 -8.17697 -8.11619 -6.29460 -3.80859 2.19828 2.53004 3.02977 3.07338 3.15421 3.36225 3.75849 3.93971 4.00393 4.11311 4.19822 4.31664 4.33632 4.43418 4.54798 4.62601 4.66253 4.72140 4.76407 4.89165 4.92689 4.98315 5.06874 5.10056 5.17784 5.20101 5.25161 5.27081 5.32306 5.38562 5.40632 5.47805 5.52338 5.62575 5.62868 5.80205 5.80730 5.86713 5.93954 6.08104 6.64548 6.93671 7.06553 7.49435 7.59932 7.63634 7.77665 8.16386 8.61669 8.96828 9.44076 9.84794 10.83754 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.001723 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.113161 B =16247.044942 C =16513.285161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.606 5.606 3 C 0.084 3.916 4 C 0.097 3.903 5 H 0.102 0.898 6 O -0.540 6.540 7 C 0.030 3.970 8 N -0.658 5.658 9 C 0.048 3.952 10 C 0.450 3.550 11 O -0.562 6.562 12 N -0.592 5.592 13 C -0.305 4.305 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.882 5.882 17 Si 0.880 3.120 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.519 3.481 22 O -0.533 6.533 23 C -0.141 4.141 24 H 0.102 0.898 25 C -0.104 4.104 26 C -0.155 4.155 27 C 0.055 3.945 28 O -0.376 6.376 29 C 0.066 3.934 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.367 0.633 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.352 0.648 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.867 -20.372 -23.731 34.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C -0.039 4.039 4 C 0.036 3.964 5 H 0.119 0.881 6 O -0.344 6.344 7 C -0.101 4.101 8 N -0.291 5.291 9 C -0.085 4.085 10 C 0.236 3.764 11 O -0.443 6.443 12 N -0.231 5.231 13 C -0.433 4.433 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.522 5.522 17 Si 0.707 3.293 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.196 1.196 21 C 0.307 3.693 22 O -0.410 6.410 23 C -0.163 4.163 24 H 0.120 0.880 25 C -0.142 4.142 26 C -0.193 4.193 27 C -0.021 4.021 28 O -0.294 6.294 29 C -0.011 4.011 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.214 0.786 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.172 0.828 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.115 0.885 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.904 -20.921 -22.364 33.633 hybrid contribution 1.492 1.457 -1.883 2.810 sum -12.412 -19.464 -24.248 33.479 Atomic orbital electron populations 1.22144 0.79018 1.04583 1.01885 1.47675 1.07242 1.05546 1.73439 1.22188 0.98593 0.85230 0.97915 1.22293 0.85987 0.96361 0.91731 0.88060 1.86692 1.28227 1.62654 1.56821 1.22609 0.99263 0.97188 0.91048 1.59991 1.49466 1.05031 1.14630 1.21725 0.96779 0.93533 0.96474 1.19699 0.83411 0.83499 0.89828 1.90577 1.55917 1.50318 1.47511 1.42205 1.51071 1.21247 1.08604 1.19442 1.33073 1.07552 0.83269 0.86279 1.25038 0.97383 0.97290 0.96497 1.69622 1.39304 1.25952 1.17304 0.86661 0.79341 0.81538 0.81756 1.19621 1.20200 1.19580 1.20489 0.87855 0.85041 0.75921 1.90718 1.14144 1.87170 1.48930 1.21999 0.99550 0.93371 1.01393 0.87965 1.21440 0.97121 0.92266 1.03413 1.22219 1.00280 0.98006 0.98808 1.22669 0.93942 0.89737 0.95796 1.87974 1.34226 1.14939 1.92278 1.22721 0.97579 0.86582 0.94224 0.92615 0.90021 0.90025 0.89923 0.89013 0.78626 0.90685 0.94562 0.82824 0.89554 0.93863 0.79729 0.91634 0.90938 0.90448 0.90929 0.90296 0.88549 0.92785 0.92132 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 9.78 59.85 0.59 0.92 16 2 N -0.61 -4.84 2.80 -181.57 -0.51 -5.35 16 3 C 0.08 0.67 5.09 -4.04 -0.02 0.65 16 4 C 0.10 1.01 3.41 -26.73 -0.09 0.92 16 5 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 6 O -0.54 -5.89 11.92 -35.23 -0.42 -6.31 16 7 C 0.03 0.33 5.32 -3.83 -0.02 0.31 16 8 N -0.66 -10.46 6.08 -115.06 -0.70 -11.16 16 9 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 10 C 0.45 10.47 7.82 -10.98 -0.09 10.39 16 11 O -0.56 -15.58 15.78 5.55 0.09 -15.49 16 12 N -0.59 -14.34 5.09 -10.96 -0.06 -14.40 16 13 C -0.30 -8.77 10.16 -14.93 -0.15 -8.92 16 14 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 16 N -0.88 -26.05 13.96 55.50 0.77 -25.28 16 17 Si 0.88 19.55 27.74 -169.99 -4.71 14.83 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 21 C 0.52 5.17 6.92 -10.99 -0.08 5.09 16 22 O -0.53 -7.30 15.56 5.56 0.09 -7.21 16 23 C -0.14 -1.06 1.89 -91.63 -0.17 -1.24 16 24 H 0.10 0.62 7.67 -51.93 -0.40 0.22 16 25 C -0.10 -0.79 4.76 -26.55 -0.13 -0.91 16 26 C -0.16 -0.87 6.14 -26.59 -0.16 -1.03 16 27 C 0.06 0.34 6.84 37.21 0.25 0.60 16 28 O -0.38 -3.12 10.77 -35.23 -0.38 -3.50 16 29 C 0.07 0.51 5.81 37.21 0.22 0.72 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.38 3.99 -51.93 -0.21 0.17 16 32 H 0.08 0.38 6.80 -51.93 -0.35 0.02 16 33 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 34 H 0.09 0.83 7.49 -51.93 -0.39 0.45 16 35 H 0.37 2.66 8.82 45.56 0.40 3.07 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.35 6.09 8.43 -39.29 -0.33 5.76 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.11 0.71 5.46 -51.93 -0.28 0.43 16 LS Contribution 399.77 15.07 6.02 6.02 Total: -1.00 -37.09 399.77 -7.03 -44.13 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -7.25 Total: 14.40 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 0.02 Total: 9.31 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.49 Total: -56.19 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.63 Total: -32.51 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.09 -7.03 -44.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486266130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.006 kcal (2) G-P(sol) polarization free energy of solvation -37.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds