Wall clock time and date at job start Wed Apr 1 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46936 * 2 1 4 4 O 1.42898 * 109.47444 * 119.99648 * 2 1 3 5 5 C 1.42899 * 114.00219 * 90.00365 * 4 2 1 6 6 C 1.52990 * 109.47438 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 O 1.42894 * 112.94182 * 53.42971 * 11 10 9 13 13 C 1.53939 * 113.73376 * 281.72718 * 11 10 9 14 14 N 1.47965 * 86.18318 * 221.92110 * 13 11 10 15 15 C 1.46896 * 111.00100 * 137.57689 * 14 13 11 16 16 C 1.50699 * 109.46970 * 70.64608 * 15 14 13 17 17 O 1.21294 * 120.00179 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00421 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00345 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99689 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00485 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99694 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47061 * 90.00319 * 23 21 19 25 25 H 1.48503 * 109.47215 * 209.99985 * 23 21 19 26 26 H 1.48496 * 109.47476 * 330.00198 * 23 21 19 27 27 C 1.47972 * 90.75954 * 24.68659 * 14 13 11 28 28 H 1.08997 * 109.47473 * 60.00204 * 1 2 3 29 29 H 1.08997 * 109.46820 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46925 * 299.99998 * 1 2 3 31 31 H 1.08999 * 109.47193 * 239.99952 * 2 1 3 32 32 H 1.09000 * 109.47201 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47140 * 299.99684 * 3 2 1 34 34 H 1.08999 * 109.47219 * 59.99968 * 3 2 1 35 35 H 1.08998 * 109.47093 * 59.99678 * 5 4 2 36 36 H 1.09011 * 109.46622 * 300.00288 * 5 4 2 37 37 H 1.08998 * 109.47508 * 59.99606 * 6 5 4 38 38 H 1.09002 * 109.47337 * 299.99891 * 6 5 4 39 39 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 40 40 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 41 41 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 42 42 H 0.96702 * 114.00177 * 309.66781 * 12 11 10 43 43 H 1.09004 * 113.75478 * 336.23643 * 13 11 10 44 44 H 1.08996 * 113.76197 * 107.59918 * 13 11 10 45 45 H 1.09004 * 109.46697 * 190.64022 * 15 14 13 46 46 H 1.08997 * 109.47494 * 310.64441 * 15 14 13 47 47 H 0.97010 * 119.99656 * 359.97438 * 18 16 15 48 48 H 0.97004 * 120.00654 * 180.02562 * 22 21 19 49 49 H 1.09001 * 113.75645 * 220.99382 * 27 14 13 50 50 H 1.09000 * 113.75871 * 89.63163 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2002 -2.0781 0.9887 6 6 2.7081 -2.6924 2.2946 7 6 2.9119 -4.1738 2.1070 8 8 2.6739 -4.6875 1.0344 9 7 3.3577 -4.9278 3.1313 10 6 3.5616 -6.3668 2.9470 11 6 4.0742 -6.9803 4.2515 12 8 3.2426 -6.6783 5.3736 13 6 5.5728 -6.7357 4.5044 14 7 5.6257 -8.1444 4.9540 15 6 6.8245 -8.8175 4.4365 16 6 8.0453 -8.2761 5.1348 17 8 7.9283 -7.4141 5.9800 18 7 9.2672 -8.7498 4.8201 19 6 10.3779 -8.2569 5.4550 20 1 10.2738 -7.4888 6.2070 21 6 11.6376 -8.7458 5.1309 22 7 11.7644 -9.6801 4.2156 23 14 13.1510 -8.0737 5.9954 24 1 13.4245 -8.8794 7.2125 25 1 14.3179 -8.1481 5.0800 26 1 12.9137 -6.6595 6.3810 27 6 4.4383 -8.4714 4.1338 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.9321 -2.2466 0.1987 36 1 1.2539 -2.5433 0.7125 37 1 1.9760 -2.5240 3.0843 38 1 3.6543 -2.2273 2.5712 39 1 3.5477 -4.5169 3.9892 40 1 2.6167 -6.8353 2.6718 41 1 4.2930 -6.5318 2.1560 42 1 3.0352 -5.7385 5.4679 43 1 6.1454 -6.5424 3.5973 44 1 5.7724 -6.0141 5.2966 45 1 6.7468 -9.8893 4.6193 46 1 6.9087 -8.6367 3.3649 47 1 9.3608 -9.4395 4.1444 48 1 12.6437 -10.0216 3.9896 49 1 3.7316 -9.1366 4.6299 50 1 4.6791 -8.7858 3.1183 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500793002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:19 Heat of formation + Delta-G solvation = -134.903639 kcal Electronic energy + Delta-G solvation = -29558.072991 eV Core-core repulsion = 25200.690387 eV Total energy + Delta-G solvation = -4357.382603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.80782 -39.84168 -38.64800 -37.94449 -35.89010 -34.55355 -33.90154 -33.75373 -31.47788 -31.27347 -30.15259 -27.72158 -27.49532 -26.19623 -25.05188 -23.92288 -22.38980 -21.75454 -20.81222 -20.01402 -19.22653 -18.11766 -17.84374 -17.21562 -16.64747 -16.44185 -16.39786 -15.77860 -15.47951 -15.37025 -15.28107 -15.04245 -14.63653 -14.34236 -14.04285 -13.86107 -13.67303 -13.59315 -13.22784 -13.11658 -12.98392 -12.85978 -12.65113 -12.34717 -12.20425 -12.05792 -11.90841 -11.84601 -11.57451 -11.51331 -11.31613 -11.08456 -11.04646 -10.80228 -10.41200 -10.25516 -10.22256 -9.99098 -9.95316 -9.52535 -9.47935 -8.68987 -8.25912 -7.98494 -6.43643 -3.84597 2.26730 2.54623 3.16398 3.25154 3.30660 3.39270 3.64560 3.86865 3.96304 4.18598 4.20934 4.33651 4.45382 4.50494 4.56250 4.66225 4.71645 4.80483 4.85429 5.06402 5.08695 5.16170 5.21374 5.23098 5.25163 5.35423 5.39734 5.40613 5.43429 5.45080 5.48672 5.60824 5.66386 5.74536 5.75739 5.78946 5.81309 5.96145 6.10935 6.22377 6.55615 6.83011 7.01666 7.11265 7.39627 7.53151 7.81241 8.03409 8.59042 9.15797 9.51727 10.03313 10.74035 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.001788 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.752967 B =15652.979515 C =17133.415742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.141 4.141 7 C 0.521 3.479 8 O -0.540 6.540 9 N -0.728 5.728 10 C 0.101 3.899 11 C 0.087 3.913 12 O -0.521 6.521 13 C 0.000 4.000 14 N -0.440 5.440 15 C 0.007 3.993 16 C 0.443 3.557 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.018 3.982 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.401 0.599 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.371 0.629 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.101 0.899 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.630 14.311 -9.074 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.024 3.976 3 C -0.207 4.207 4 O -0.306 6.306 5 C 0.001 3.999 6 C -0.181 4.181 7 C 0.307 3.693 8 O -0.417 6.417 9 N -0.381 5.381 10 C -0.024 4.024 11 C 0.045 3.955 12 O -0.326 6.326 13 C -0.130 4.130 14 N -0.163 5.163 15 C -0.125 4.125 16 C 0.228 3.772 17 O -0.463 6.463 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.112 4.112 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.236 0.764 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.219 0.781 43 H 0.092 0.908 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.119 0.881 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.591 13.689 -8.388 26.906 hybrid contribution 1.105 0.451 -0.817 1.447 sum -20.485 14.140 -9.206 26.539 Atomic orbital electron populations 1.22308 0.95961 1.02460 1.02618 1.22080 0.93657 0.93759 0.88067 1.21871 1.01924 0.94401 1.02549 1.87850 1.86752 1.19975 1.36002 1.22130 1.00470 0.81078 0.96237 1.21481 1.04889 0.91565 1.00138 1.20415 0.76336 0.88761 0.83779 1.90734 1.50563 1.74536 1.25848 1.45876 1.68245 1.08994 1.14989 1.22052 1.02488 0.80033 0.97783 1.23057 0.90454 0.97116 0.84888 1.86640 1.69595 1.29551 1.46768 1.24525 0.93402 0.94211 1.00818 1.68477 1.00887 1.02872 1.44033 1.22513 0.91986 1.00615 0.97372 1.19649 0.83922 0.86598 0.86990 1.90522 1.85843 1.34349 1.35572 1.41868 1.04797 1.36513 1.36854 1.19696 0.83687 1.20183 1.19356 0.87933 1.25261 0.99229 0.96483 0.96939 1.69608 1.25096 1.28109 1.31449 0.85854 0.80253 0.79383 0.78772 1.20361 1.20929 1.19451 1.24126 0.94750 0.94171 0.98131 0.91612 0.92409 0.91735 0.92073 0.91898 0.91229 0.91738 0.92379 0.92492 0.87811 0.87666 0.76417 0.90217 0.90039 0.78129 0.90828 0.88222 0.88900 0.92749 0.77491 0.91853 0.88114 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 9.53 37.16 0.35 -0.69 16 2 C 0.08 0.57 3.34 -26.73 -0.09 0.48 16 3 C -0.15 -0.87 9.56 37.16 0.36 -0.51 16 4 O -0.39 -3.39 9.99 -35.23 -0.35 -3.74 16 5 C 0.08 0.66 5.04 37.15 0.19 0.84 16 6 C -0.14 -0.99 6.07 -27.89 -0.17 -1.16 16 7 C 0.52 4.96 7.83 -10.98 -0.09 4.88 16 8 O -0.54 -7.22 15.98 5.55 0.09 -7.13 16 9 N -0.73 -5.85 5.34 -60.30 -0.32 -6.18 16 10 C 0.10 0.97 5.28 -4.04 -0.02 0.95 16 11 C 0.09 0.97 1.52 -89.69 -0.14 0.84 16 12 O -0.52 -5.90 13.50 -35.23 -0.48 -6.37 16 13 C 0.00 -0.01 6.16 -2.76 -0.02 -0.02 16 14 N -0.44 -7.30 5.95 -239.59 -1.43 -8.72 16 15 C 0.01 0.13 5.31 -4.98 -0.03 0.10 16 16 C 0.44 10.46 7.59 -10.99 -0.08 10.38 16 17 O -0.58 -15.65 15.13 5.54 0.08 -15.56 16 18 N -0.56 -14.27 5.29 -10.97 -0.06 -14.33 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.02 0.22 7.38 -2.76 -0.02 0.19 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 30 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.06 0.40 7.79 -51.93 -0.40 0.00 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.53 8.04 -51.93 -0.42 0.11 16 36 H 0.06 0.50 7.83 -51.92 -0.41 0.09 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.40 2.25 7.31 -40.82 -0.30 1.95 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 42 H 0.37 2.65 7.61 45.56 0.35 3.00 16 43 H 0.07 1.06 7.67 -51.93 -0.40 0.66 16 44 H 0.10 1.61 8.09 -51.93 -0.42 1.19 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16 47 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 LS Contribution 415.33 15.07 6.26 6.26 Total: -1.00 -35.52 415.33 -8.18 -43.70 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -7.69 Total: 11.54 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 0.01 Total: 8.28 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -1.08 Total: -52.97 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.65 Total: -32.81 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -35.52 -8.18 -43.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500793002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.204 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds